Wall clock time and date at job start Tue Mar 31 2020 12:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29022 * 124.92048 * 2 1 4 4 C 1.31785 * 117.12747 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.74917 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47348 * 305.02192 * 5 4 3 7 7 C 1.52995 * 109.47013 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99356 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00297 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.63050 * 359.97438 * 10 8 7 12 12 C 1.53188 * 108.77345 * 126.41497 * 11 10 8 13 13 C 1.53038 * 109.31577 * 54.63596 * 12 11 10 14 14 C 1.53043 * 109.53602 * 298.63148 * 13 12 11 15 15 H 1.08997 * 109.50072 * 301.41544 * 14 13 12 16 16 C 1.50704 * 109.49459 * 181.31479 * 14 13 12 17 17 H 1.08000 * 120.00003 * 245.44703 * 16 14 13 18 18 C 1.37875 * 119.99825 * 65.45480 * 16 14 13 19 19 N 1.31516 * 120.00146 * 9.56915 * 18 16 14 20 20 Si 1.86800 * 119.99969 * 189.57584 * 18 16 14 21 21 H 1.48498 * 109.47500 * 94.98905 * 20 18 16 22 22 H 1.48507 * 109.47110 * 214.99019 * 20 18 16 23 23 H 1.48497 * 109.47091 * 334.98521 * 20 18 16 24 24 C 1.46929 * 120.63205 * 180.02562 * 10 8 7 25 25 C 1.33636 * 114.49845 * 0.23206 * 4 3 2 26 26 S 1.70977 * 124.91484 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47080 * 89.99773 * 1 2 3 28 28 H 1.09001 * 109.47217 * 210.00342 * 1 2 3 29 29 H 1.09006 * 109.46816 * 330.00006 * 1 2 3 30 30 H 1.09009 * 109.47216 * 185.02395 * 5 4 3 31 31 H 1.09001 * 109.47159 * 65.02365 * 5 4 3 32 32 H 1.09002 * 109.46663 * 60.00318 * 6 5 4 33 33 H 1.08992 * 109.47239 * 300.00403 * 6 5 4 34 34 H 1.09002 * 109.47051 * 60.00672 * 7 6 5 35 35 H 1.09001 * 109.47421 * 300.00128 * 7 6 5 36 36 H 1.09000 * 109.58720 * 246.19939 * 11 10 8 37 37 H 1.09000 * 109.58609 * 6.47938 * 11 10 8 38 38 H 1.09000 * 109.50240 * 294.67907 * 12 11 10 39 39 H 1.09001 * 109.49471 * 174.58659 * 12 11 10 40 40 H 1.09001 * 109.46070 * 178.61064 * 13 12 11 41 41 H 1.09001 * 109.46140 * 58.65145 * 13 12 11 42 42 H 0.97002 * 119.99918 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58964 * 113.79614 * 24 10 8 44 44 H 1.09006 * 109.58709 * 353.36909 * 24 10 8 45 45 H 1.08006 * 126.03835 * 179.77100 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5308 2.0244 -0.0012 6 6 4.2327 2.9499 -1.1825 7 6 5.2268 4.1129 -1.1827 8 6 4.9337 5.0242 -2.3467 9 8 4.0193 4.7687 -3.1014 10 7 5.6875 6.1228 -2.5489 11 6 6.7983 6.4457 -1.6429 12 6 8.0719 6.6360 -2.4726 13 6 7.8182 7.6872 -3.5555 14 6 6.7032 7.2045 -4.4861 15 1 6.9901 6.2536 -4.9350 16 6 6.4763 8.2256 -5.5710 17 1 5.5386 8.7589 -5.6231 18 6 7.4658 8.4788 -6.4972 19 7 8.5276 7.7048 -6.5533 20 14 7.2982 9.9212 -7.6723 21 1 8.0103 11.0991 -7.1150 22 1 7.8899 9.5608 -8.9859 23 1 5.8611 10.2501 -7.8504 24 6 5.4136 7.0211 -3.6789 25 6 3.9353 -0.4007 -0.0059 26 16 2.4856 -1.4020 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 5.5449 1.6351 -0.0915 31 1 4.4376 2.5828 0.9303 32 1 3.2186 3.3393 -1.0921 33 1 4.3258 2.3916 -2.1140 34 1 6.2411 3.7239 -1.2729 35 1 5.1332 4.6711 -0.2512 36 1 6.5735 7.3652 -1.1025 37 1 6.9400 5.6304 -0.9335 38 1 8.3460 5.6905 -2.9405 39 1 8.8819 6.9699 -1.8242 40 1 8.7303 7.8424 -4.1317 41 1 7.5201 8.6256 -3.0880 42 1 9.2236 7.8828 -7.2052 43 1 5.0761 7.9874 -3.3042 44 1 4.6435 6.5841 -4.3147 45 1 4.9545 -0.7583 -0.0107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:33 Heat of formation + Delta-G solvation = -18.549732 kcal Electronic energy + Delta-G solvation = -24290.192445 eV Core-core repulsion = 20819.339257 eV Total energy + Delta-G solvation = -3470.853188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19888 -39.55777 -36.85020 -34.81922 -33.44577 -32.31305 -31.37464 -30.29822 -28.94050 -27.68976 -25.07031 -24.64908 -23.18399 -21.88553 -21.57653 -19.93330 -19.67620 -18.23187 -17.74920 -16.71408 -16.14666 -15.73060 -15.61477 -15.16487 -15.03478 -14.59228 -14.06690 -13.99983 -13.56155 -13.45957 -13.38424 -12.96948 -12.75724 -12.62047 -12.51436 -12.44559 -12.15606 -11.99201 -11.77648 -11.44080 -11.27139 -10.98081 -10.81960 -10.73878 -10.68081 -10.31494 -10.04688 -9.83247 -9.72091 -9.63257 -9.49456 -9.22472 -8.90015 -8.83127 -8.35514 -7.85958 -6.04444 -4.06491 0.47951 1.12310 1.49182 2.57652 3.13280 3.30073 3.37477 3.40946 3.60034 3.82320 4.43969 4.63119 4.74197 4.87694 4.98891 5.00367 5.11689 5.16907 5.25445 5.29512 5.33283 5.46205 5.54739 5.56993 5.60178 5.63309 5.69070 5.78204 5.99323 6.11857 6.21182 6.31106 6.41050 6.43144 6.46083 6.66354 6.80231 6.99549 7.14071 7.26235 7.55858 7.68248 7.90082 7.98392 8.06326 8.37692 8.72612 8.97558 9.56974 11.04617 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.002133 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.364354 B =13122.931694 C =13527.228635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.465 5.465 4 C 0.079 3.921 5 C -0.045 4.045 6 C -0.095 4.095 7 C -0.139 4.139 8 C 0.507 3.493 9 O -0.551 6.551 10 N -0.606 5.606 11 C 0.110 3.890 12 C -0.135 4.135 13 C -0.106 4.106 14 C 0.038 3.962 15 H 0.036 0.964 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.117 3.883 25 C -0.262 4.262 26 S 0.101 5.899 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.260 0.740 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 -16.174 18.059 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.181 5.181 4 C -0.052 4.052 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.179 4.179 8 C 0.295 3.705 9 O -0.429 6.429 10 N -0.338 5.338 11 C -0.013 4.013 12 C -0.174 4.174 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.054 0.946 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.004 4.004 25 C -0.401 4.401 26 S 0.355 5.645 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.556 -16.903 17.560 25.832 hybrid contribution 0.918 1.495 -0.681 1.882 sum -7.638 -15.408 16.880 24.097 Atomic orbital electron populations 1.20461 0.85160 1.04151 1.04101 1.27079 1.01828 0.90795 1.02936 1.66079 1.04614 1.31432 1.15927 1.20313 0.90177 0.94258 1.00468 1.20275 0.95407 0.92687 1.00179 1.21226 1.00000 0.94625 0.97444 1.21689 1.01351 0.96915 0.97929 1.20542 0.82138 0.81426 0.86385 1.90666 1.31245 1.73091 1.47914 1.48334 1.31152 1.24934 1.29430 1.21713 0.87325 1.00295 0.91973 1.21992 0.95316 1.01473 0.98578 1.21560 1.02499 0.95243 0.95095 1.18993 0.89134 0.97762 0.92210 0.94588 1.21057 1.00983 1.21807 1.11633 0.92460 1.24936 0.95614 0.96236 0.96889 1.69977 1.09744 1.36760 1.36022 0.86621 0.78352 0.82995 0.80319 1.20700 1.21309 1.19805 1.21983 1.00946 0.91044 0.86423 1.26816 1.03027 0.95684 1.14578 1.83916 0.98335 1.13190 1.69024 0.89408 0.90168 0.89162 0.90130 0.90027 0.90289 0.91327 0.89177 0.89265 0.92007 0.90987 0.92237 0.92454 0.90579 0.94306 0.93013 0.92900 0.90270 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.00 0.38 -0.14 16 2 C 0.05 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.47 -5.79 10.34 -8.06 -0.08 -5.88 16 4 C 0.08 0.89 6.08 -84.23 -0.51 0.38 16 5 C -0.05 -0.45 5.71 -27.88 -0.16 -0.61 16 6 C -0.09 -1.23 4.40 -26.73 -0.12 -1.34 16 7 C -0.14 -1.76 4.05 -27.88 -0.11 -1.88 16 8 C 0.51 9.26 7.70 -10.99 -0.08 9.17 16 9 O -0.55 -12.27 15.39 5.56 0.09 -12.19 16 10 N -0.61 -11.29 2.97 -172.74 -0.51 -11.80 16 11 C 0.11 1.66 6.34 -3.71 -0.02 1.64 16 12 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 13 C -0.11 -2.33 5.02 -26.69 -0.13 -2.47 16 14 C 0.04 0.95 2.12 -91.62 -0.19 0.75 16 15 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 16 C -0.52 -14.13 8.48 -34.44 -0.29 -14.43 16 17 H 0.06 1.56 7.77 -52.49 -0.41 1.15 16 18 C 0.07 1.80 5.19 -17.82 -0.09 1.71 16 19 N -0.89 -25.36 12.17 55.43 0.67 -24.68 16 20 Si 0.89 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 2.58 5.66 -3.69 -0.02 2.56 16 25 C -0.26 -2.47 11.07 29.12 0.32 -2.15 16 26 S 0.10 0.85 23.18 -107.50 -2.49 -1.64 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.64 8.03 -51.92 -0.42 0.22 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.19 8.03 -51.93 -0.42 0.78 16 33 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 35 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.89 6.88 -51.93 -0.36 1.54 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.91 7.01 -51.93 -0.36 1.54 16 45 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -32.88 375.79 -10.28 -43.16 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.29 Total: 0.00 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.31 Total: -8.88 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.08 Total: -42.36 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -10.28 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.611 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds