Wall clock time and date at job start Tue Mar 31 2020 12:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29022 * 124.92048 * 2 1 4 4 C 1.31785 * 117.12747 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.74917 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47348 * 305.02192 * 5 4 3 7 7 C 1.52995 * 109.47013 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99356 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00297 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.63050 * 359.97438 * 10 8 7 12 12 C 1.53188 * 108.77345 * 126.41497 * 11 10 8 13 13 C 1.53038 * 109.31577 * 54.63596 * 12 11 10 14 14 C 1.53043 * 109.53602 * 298.63148 * 13 12 11 15 15 H 1.08997 * 109.50072 * 301.41544 * 14 13 12 16 16 C 1.50704 * 109.49459 * 181.31479 * 14 13 12 17 17 H 1.08000 * 120.00003 * 245.44703 * 16 14 13 18 18 C 1.37875 * 119.99825 * 65.45480 * 16 14 13 19 19 N 1.31516 * 120.00146 * 9.56915 * 18 16 14 20 20 Si 1.86800 * 119.99969 * 189.57584 * 18 16 14 21 21 H 1.48498 * 109.47500 * 94.98905 * 20 18 16 22 22 H 1.48507 * 109.47110 * 214.99019 * 20 18 16 23 23 H 1.48497 * 109.47091 * 334.98521 * 20 18 16 24 24 C 1.46929 * 120.63205 * 180.02562 * 10 8 7 25 25 C 1.33636 * 114.49845 * 0.23206 * 4 3 2 26 26 S 1.70977 * 124.91484 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47080 * 89.99773 * 1 2 3 28 28 H 1.09001 * 109.47217 * 210.00342 * 1 2 3 29 29 H 1.09006 * 109.46816 * 330.00006 * 1 2 3 30 30 H 1.09009 * 109.47216 * 185.02395 * 5 4 3 31 31 H 1.09001 * 109.47159 * 65.02365 * 5 4 3 32 32 H 1.09002 * 109.46663 * 60.00318 * 6 5 4 33 33 H 1.08992 * 109.47239 * 300.00403 * 6 5 4 34 34 H 1.09002 * 109.47051 * 60.00672 * 7 6 5 35 35 H 1.09001 * 109.47421 * 300.00128 * 7 6 5 36 36 H 1.09000 * 109.58720 * 246.19939 * 11 10 8 37 37 H 1.09000 * 109.58609 * 6.47938 * 11 10 8 38 38 H 1.09000 * 109.50240 * 294.67907 * 12 11 10 39 39 H 1.09001 * 109.49471 * 174.58659 * 12 11 10 40 40 H 1.09001 * 109.46070 * 178.61064 * 13 12 11 41 41 H 1.09001 * 109.46140 * 58.65145 * 13 12 11 42 42 H 0.97002 * 119.99918 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58964 * 113.79614 * 24 10 8 44 44 H 1.09006 * 109.58709 * 353.36909 * 24 10 8 45 45 H 1.08006 * 126.03835 * 179.77100 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5308 2.0244 -0.0012 6 6 4.2327 2.9499 -1.1825 7 6 5.2268 4.1129 -1.1827 8 6 4.9337 5.0242 -2.3467 9 8 4.0193 4.7687 -3.1014 10 7 5.6875 6.1228 -2.5489 11 6 6.7983 6.4457 -1.6429 12 6 8.0719 6.6360 -2.4726 13 6 7.8182 7.6872 -3.5555 14 6 6.7032 7.2045 -4.4861 15 1 6.9901 6.2536 -4.9350 16 6 6.4763 8.2256 -5.5710 17 1 5.5386 8.7589 -5.6231 18 6 7.4658 8.4788 -6.4972 19 7 8.5276 7.7048 -6.5533 20 14 7.2982 9.9212 -7.6723 21 1 8.0103 11.0991 -7.1150 22 1 7.8899 9.5608 -8.9859 23 1 5.8611 10.2501 -7.8504 24 6 5.4136 7.0211 -3.6789 25 6 3.9353 -0.4007 -0.0059 26 16 2.4856 -1.4020 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 5.5449 1.6351 -0.0915 31 1 4.4376 2.5828 0.9303 32 1 3.2186 3.3393 -1.0921 33 1 4.3258 2.3916 -2.1140 34 1 6.2411 3.7239 -1.2729 35 1 5.1332 4.6711 -0.2512 36 1 6.5735 7.3652 -1.1025 37 1 6.9400 5.6304 -0.9335 38 1 8.3460 5.6905 -2.9405 39 1 8.8819 6.9699 -1.8242 40 1 8.7303 7.8424 -4.1317 41 1 7.5201 8.6256 -3.0880 42 1 9.2236 7.8828 -7.2052 43 1 5.0761 7.9874 -3.3042 44 1 4.6435 6.5841 -4.3147 45 1 4.9545 -0.7583 -0.0107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:33 Heat of formation + Delta-G solvation = -38.446787 kcal Electronic energy + Delta-G solvation = -24291.055246 eV Core-core repulsion = 20819.339257 eV Total energy + Delta-G solvation = -3471.715989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17097 -40.79698 -38.44865 -35.78281 -35.31531 -33.29248 -32.92230 -31.94764 -29.75473 -28.62026 -26.96818 -26.06308 -24.13675 -23.33054 -22.72250 -21.31347 -20.63380 -19.69303 -18.68977 -18.35489 -17.75170 -16.89789 -16.79925 -16.46453 -16.10497 -15.96469 -15.27348 -15.07931 -14.96544 -14.68861 -14.57850 -14.23831 -14.02587 -13.74730 -13.72500 -13.60976 -13.22300 -13.02880 -12.89202 -12.79020 -12.72291 -12.59610 -12.36614 -12.14940 -11.86762 -11.84117 -11.62719 -11.57264 -11.29689 -10.89375 -10.62169 -10.54915 -10.46725 -10.33833 -9.58357 -9.45186 -8.17069 -6.26571 -0.21625 0.46767 0.79834 1.38949 1.39860 1.50544 1.72320 1.81677 2.18462 2.43220 3.12834 3.20141 3.62420 3.85404 4.04341 4.11259 4.16430 4.26189 4.34639 4.38276 4.46570 4.50456 4.55515 4.58877 4.64112 4.67486 4.71782 4.80112 4.83860 4.85689 4.87955 4.99500 5.04980 5.11338 5.25819 5.28250 5.30767 5.42492 5.46356 5.59345 5.60344 5.91429 6.01227 6.31376 6.62322 6.83583 6.85586 7.29256 7.40283 8.91332 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.002133 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.364354 B =13122.931694 C =13527.228635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.033 3.967 3 N -0.506 5.506 4 C 0.051 3.949 5 C -0.037 4.037 6 C -0.086 4.086 7 C -0.125 4.125 8 C 0.496 3.504 9 O -0.603 6.603 10 N -0.611 5.611 11 C 0.109 3.891 12 C -0.128 4.128 13 C -0.100 4.100 14 C 0.040 3.960 15 H -0.011 1.011 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.916 5.916 20 Si 0.953 3.047 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.129 3.871 25 C -0.266 4.266 26 S 0.138 5.862 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.044 0.956 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -16.750 20.756 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.245 4.245 3 N -0.222 5.222 4 C -0.081 4.081 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.164 4.164 8 C 0.287 3.713 9 O -0.485 6.485 10 N -0.342 5.342 11 C -0.012 4.012 12 C -0.166 4.166 13 C -0.138 4.138 14 C 0.021 3.979 15 H 0.007 0.993 16 C -0.578 4.578 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.554 5.554 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.196 1.196 24 C 0.006 3.994 25 C -0.405 4.405 26 S 0.392 5.608 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.651 -17.482 20.292 27.855 hybrid contribution 0.593 1.598 -1.571 2.318 sum -7.058 -15.884 18.721 25.546 Atomic orbital electron populations 1.20595 0.83482 1.05225 1.04652 1.27608 1.03199 0.91216 1.02475 1.66108 1.05611 1.33049 1.17452 1.20593 0.90212 0.95408 1.01839 1.20261 0.96505 0.91938 0.98957 1.21073 0.98586 0.95044 0.97728 1.21741 1.02576 0.95675 0.96446 1.21661 0.81018 0.81371 0.87241 1.90644 1.33591 1.74163 1.50150 1.48440 1.32400 1.24566 1.28810 1.22028 0.84424 1.03352 0.91433 1.21915 0.97949 0.98992 0.97750 1.21370 0.99489 0.97181 0.95749 1.18890 0.91506 0.94831 0.92711 0.99275 1.21435 1.00892 1.22522 1.12982 0.93068 1.25702 0.95300 0.98595 0.98583 1.70095 1.10409 1.38120 1.36809 0.85618 0.78365 0.79979 0.78168 1.19479 1.21041 1.19561 1.21514 0.98496 0.91965 0.87398 1.27181 1.04581 0.95421 1.13275 1.83727 0.97307 1.11792 1.67960 0.89019 0.87686 0.89511 0.87402 0.88686 0.93331 0.94163 0.86121 0.85558 0.89930 0.86061 0.93619 0.88791 0.93985 0.93718 0.92917 0.92165 0.93582 0.78259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.46 71.23 0.75 -0.26 16 2 C 0.03 0.63 7.39 88.52 0.65 1.29 16 3 N -0.51 -12.53 10.34 -179.41 -1.86 -14.38 16 4 C 0.05 1.08 6.08 41.52 0.25 1.33 16 5 C -0.04 -0.65 5.71 29.85 0.17 -0.48 16 6 C -0.09 -2.15 4.40 30.59 0.13 -2.02 16 7 C -0.13 -2.81 4.05 29.85 0.12 -2.69 16 8 C 0.50 17.89 7.70 87.66 0.67 18.57 16 9 O -0.60 -28.09 15.39 -3.03 -0.05 -28.13 16 10 N -0.61 -22.19 2.97 -818.81 -2.43 -24.62 16 11 C 0.11 2.87 6.34 86.36 0.55 3.42 16 12 C -0.13 -4.12 6.08 30.67 0.19 -3.94 16 13 C -0.10 -4.41 5.02 30.62 0.15 -4.26 16 14 C 0.04 2.06 2.12 -11.44 -0.02 2.03 16 15 H -0.01 -0.66 8.09 -2.39 -0.02 -0.68 16 16 C -0.54 -30.65 8.48 25.60 0.22 -30.43 16 17 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 18 C 0.02 0.99 5.19 84.65 0.44 1.43 16 19 N -0.92 -53.91 12.17 21.45 0.26 -53.65 16 20 Si 0.95 44.36 29.55 68.60 2.03 46.39 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.13 5.88 5.66 86.38 0.49 6.37 16 25 C -0.27 -4.49 11.07 66.78 0.74 -3.75 16 26 S 0.14 2.09 23.18 -56.49 -1.31 0.78 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.11 1.28 8.03 -2.38 -0.02 1.26 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.50 8.03 -2.39 -0.02 1.48 16 33 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.12 2.06 7.69 -2.39 -0.02 2.05 16 35 H 0.13 1.99 7.94 -2.39 -0.02 1.97 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 2.07 5.93 -2.39 -0.01 2.06 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.04 2.13 6.88 -2.39 -0.02 2.11 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.05 2.36 7.01 -2.38 -0.02 2.34 16 45 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -78.21 375.79 3.11 -75.10 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.97 Total: 11.90 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 5.50 Total: -13.38 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.03 Total: -92.66 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.13 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.31 Total: 0.78 kcal Total: -78.21 3.11 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.656 kcal (2) G-P(sol) polarization free energy of solvation -78.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds