Wall clock time and date at job start Tue Mar 31 2020 13:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47545 * 2 1 4 4 C 1.53001 * 109.46703 * 239.99655 * 2 1 3 5 5 C 1.50701 * 109.47133 * 120.00190 * 2 1 3 6 6 N 1.30943 * 122.90592 * 244.54251 * 5 2 1 7 7 C 1.29428 * 117.36415 * 180.02562 * 6 5 2 8 8 S 1.70949 * 110.39059 * 359.72375 * 7 6 5 9 9 C 1.35669 * 122.90585 * 64.58248 * 5 2 1 10 10 C 1.46684 * 126.12639 * 359.95898 * 9 5 2 11 11 O 1.21679 * 120.00235 * 276.49734 * 10 9 5 12 12 N 1.34782 * 119.99564 * 96.22526 * 10 9 5 13 13 C 1.46931 * 120.62940 * 355.57603 * 12 10 9 14 14 C 1.53618 * 108.54090 * 126.36856 * 13 12 10 15 15 C 1.53047 * 109.24362 * 54.85643 * 14 13 12 16 16 C 1.53032 * 109.53480 * 298.50827 * 15 14 13 17 17 H 1.09005 * 109.50270 * 301.41113 * 16 15 14 18 18 C 1.50704 * 109.49932 * 181.31850 * 16 15 14 19 19 H 1.08005 * 119.99471 * 0.16157 * 18 16 15 20 20 C 1.37874 * 120.00390 * 180.16422 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99969 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47236 * 59.99744 * 22 20 18 24 24 H 1.48499 * 109.46789 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47234 * 299.99482 * 22 20 18 26 26 C 1.46922 * 120.62732 * 175.85528 * 12 10 9 27 27 H 1.09011 * 109.46906 * 294.60721 * 1 2 3 28 28 H 1.08998 * 109.47067 * 54.60538 * 1 2 3 29 29 H 1.09005 * 109.47636 * 174.61060 * 1 2 3 30 30 H 1.08991 * 109.47237 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46909 * 300.00767 * 3 2 1 32 32 H 1.09002 * 109.47057 * 59.99585 * 3 2 1 33 33 H 1.08998 * 109.47138 * 305.88752 * 4 2 1 34 34 H 1.09002 * 109.47076 * 65.88842 * 4 2 1 35 35 H 1.08998 * 109.47149 * 185.88417 * 4 2 1 36 36 H 1.08003 * 124.79806 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.58171 * 246.20051 * 13 12 10 38 38 H 1.08998 * 109.58886 * 6.62228 * 13 12 10 39 39 H 1.08993 * 109.63765 * 294.86229 * 14 13 12 40 40 H 1.09005 * 109.45369 * 174.73772 * 14 13 12 41 41 H 1.08997 * 109.45776 * 178.48701 * 15 14 13 42 42 H 1.09002 * 109.44965 * 58.52049 * 15 14 13 43 43 H 0.97005 * 120.00399 * 180.02562 * 21 20 18 44 44 H 1.08991 * 109.59137 * 353.36817 * 26 12 10 45 45 H 1.08997 * 109.58803 * 113.80559 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 7 2.7150 -0.1074 2.1712 7 6 3.0942 -0.8216 3.1818 8 16 2.5645 -2.4369 3.0020 9 6 1.8171 -2.0303 1.4589 10 6 1.0871 -2.9520 0.5819 11 8 -0.1267 -3.0138 0.6395 12 7 1.7607 -3.7265 -0.2917 13 6 3.2155 -3.5903 -0.4458 14 6 3.8584 -4.9724 -0.2553 15 6 3.2144 -5.9663 -1.2247 16 6 1.7197 -6.0845 -0.9184 17 1 1.5843 -6.4123 0.1124 18 6 1.0926 -7.0874 -1.8522 19 1 1.6998 -7.5924 -2.5889 20 6 -0.2561 -7.3602 -1.7661 21 7 -0.9953 -6.7456 -0.8688 22 14 -1.0334 -8.6029 -2.9242 23 1 -0.3870 -9.9265 -2.7363 24 1 -2.4844 -8.7147 -2.6285 25 1 -0.8469 -8.1556 -4.3279 26 6 1.0531 -4.7188 -1.1123 27 1 -0.3633 0.4280 0.9344 28 1 -0.3633 0.5952 -0.8377 29 1 -0.3634 -1.0231 -0.0965 30 1 3.1300 1.4423 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.5930 -1.7140 -1.3034 34 1 1.7652 -0.1503 -2.1361 35 1 3.1248 -0.8135 -1.1982 36 1 3.6605 -0.4484 4.0223 37 1 3.4435 -3.2124 -1.4424 38 1 3.5995 -2.9003 0.3055 39 1 3.7030 -5.3106 0.7691 40 1 4.9274 -4.9066 -0.4585 41 1 3.6867 -6.9420 -1.1113 42 1 3.3487 -5.6145 -2.2476 43 1 -1.9442 -6.9377 -0.8079 44 1 0.0101 -4.7738 -0.8008 45 1 1.1085 -4.4311 -2.1622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:42 Heat of formation + Delta-G solvation = -1.443794 kcal Electronic energy + Delta-G solvation = -26718.756275 eV Core-core repulsion = 23248.644856 eV Total energy + Delta-G solvation = -3470.111419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70300 -39.01963 -36.74431 -35.97262 -33.46847 -31.88803 -30.44887 -29.57219 -27.32874 -27.10435 -25.97114 -25.07963 -24.33869 -21.94762 -21.72763 -20.62814 -19.09170 -18.07308 -17.65090 -16.78364 -16.09634 -15.79253 -14.93223 -14.82402 -14.69529 -14.47156 -13.99291 -13.76668 -13.59036 -13.47355 -13.21195 -12.78901 -12.65941 -12.35720 -12.25904 -12.04808 -11.94066 -11.91135 -11.45532 -11.06445 -10.95939 -10.92635 -10.85926 -10.60379 -10.52666 -10.44738 -10.28420 -9.96028 -9.85458 -9.57625 -9.30086 -9.15585 -8.99415 -8.77120 -8.47326 -7.84498 -6.04059 -4.12821 0.53131 1.15933 1.65107 2.70808 3.20387 3.29658 3.36193 3.37120 3.64986 4.07844 4.39849 4.74280 4.91129 4.96072 5.05199 5.25466 5.28286 5.30658 5.38566 5.47322 5.62442 5.71308 5.77501 5.87525 5.89987 5.94311 5.97569 6.07527 6.12087 6.17143 6.25560 6.31448 6.42094 6.53919 6.55796 6.60426 6.79325 6.91176 7.06387 7.16561 7.56375 7.65025 7.80314 7.92672 8.11352 8.32578 8.66734 8.90975 9.53155 11.01397 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.004302 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.307594 B = 6507.522668 C = 6914.562385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.005 3.995 3 C -0.124 4.124 4 C -0.152 4.152 5 C 0.111 3.889 6 N -0.460 5.460 7 C 0.003 3.997 8 S 0.176 5.824 9 C -0.253 4.253 10 C 0.588 3.412 11 O -0.516 6.516 12 N -0.590 5.590 13 C 0.109 3.891 14 C -0.133 4.133 15 C -0.111 4.111 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.113 3.887 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.265 0.735 44 H 0.124 0.876 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.026 12.835 5.002 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.002 3.998 3 C -0.182 4.182 4 C -0.210 4.210 5 C -0.025 4.025 6 N -0.173 5.173 7 C -0.292 4.292 8 S 0.431 5.569 9 C -0.378 4.378 10 C 0.371 3.629 11 O -0.393 6.393 12 N -0.323 5.323 13 C -0.015 4.015 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.519 5.519 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.007 4.007 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.218 0.782 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.450 12.457 5.770 16.666 hybrid contribution -0.542 -0.215 -1.068 1.217 sum 8.908 12.242 4.703 15.854 Atomic orbital electron populations 1.22085 0.92660 1.04486 1.01581 1.19204 0.96093 0.95060 0.89416 1.21683 1.01128 0.93924 1.01460 1.22154 1.01088 1.01682 0.96032 1.20386 0.96969 0.88636 0.96493 1.65950 1.12621 1.37302 1.01452 1.28545 1.04681 0.94402 1.01591 1.84148 1.45921 1.12372 1.14453 1.25674 1.10821 0.99367 1.01923 1.16732 0.86604 0.79644 0.79902 1.90840 1.12649 1.66529 1.69243 1.48510 1.07664 1.36845 1.39245 1.21793 0.80918 0.97694 1.01104 1.22032 0.98635 0.95409 1.01096 1.21631 0.98769 0.97075 0.97345 1.18971 0.89076 0.91941 0.97834 0.95303 1.21027 0.93585 1.22966 1.18426 0.92339 1.25041 0.97435 0.96045 0.95391 1.69857 1.06817 1.41581 1.33597 0.86646 0.78247 0.81779 0.81280 1.20276 1.21241 1.20208 1.22412 1.00541 0.86212 0.91526 0.92807 0.92100 0.90071 0.92459 0.92734 0.92229 0.90961 0.91712 0.92544 0.78245 0.91562 0.91609 0.92090 0.92128 0.92878 0.93065 0.92517 0.85786 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.26 37.16 0.31 -1.93 16 2 C 0.01 0.07 0.76 -155.66 -0.12 -0.05 16 3 C -0.12 -1.46 7.82 37.15 0.29 -1.17 16 4 C -0.15 -2.07 7.32 37.16 0.27 -1.80 16 5 C 0.11 1.67 5.45 -83.89 -0.46 1.21 16 6 N -0.46 -6.27 9.52 -11.53 -0.11 -6.38 16 7 C 0.00 0.04 12.22 51.75 0.63 0.67 16 8 S 0.18 2.28 23.15 -107.50 -2.49 -0.21 16 9 C -0.25 -4.16 3.94 -37.09 -0.15 -4.30 16 10 C 0.59 11.70 4.75 -12.85 -0.06 11.64 16 11 O -0.52 -12.30 14.61 5.21 0.08 -12.22 16 12 N -0.59 -11.45 2.03 -174.05 -0.35 -11.81 16 13 C 0.11 1.70 5.12 -3.49 -0.02 1.69 16 14 C -0.13 -2.10 6.10 -26.39 -0.16 -2.26 16 15 C -0.11 -2.12 5.10 -26.69 -0.14 -2.25 16 16 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 17 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -25.11 11.39 55.43 0.63 -24.48 16 22 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.11 2.62 5.39 -3.71 -0.02 2.60 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.47 5.23 -51.93 -0.27 1.20 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.07 1.17 4.68 -51.93 -0.24 0.92 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 38 H 0.07 0.94 6.27 -51.93 -0.33 0.62 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.12 3.39 5.14 -51.93 -0.27 3.12 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -30.16 359.12 -9.04 -39.21 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.98 Total: 2.20 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.21 Total: -7.58 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.17 Total: -42.66 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.49 Total: -0.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.16 -9.04 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.762 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds