Wall clock time and date at job start Tue Mar 31 2020 13:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47545 * 2 1 4 4 C 1.53001 * 109.46703 * 239.99655 * 2 1 3 5 5 C 1.50701 * 109.47133 * 120.00190 * 2 1 3 6 6 N 1.30943 * 122.90592 * 244.54251 * 5 2 1 7 7 C 1.29428 * 117.36415 * 180.02562 * 6 5 2 8 8 S 1.70949 * 110.39059 * 359.72375 * 7 6 5 9 9 C 1.35669 * 122.90585 * 64.58248 * 5 2 1 10 10 C 1.46684 * 126.12639 * 359.95898 * 9 5 2 11 11 O 1.21679 * 120.00235 * 276.49734 * 10 9 5 12 12 N 1.34782 * 119.99564 * 96.22526 * 10 9 5 13 13 C 1.46931 * 120.62940 * 355.57603 * 12 10 9 14 14 C 1.53618 * 108.54090 * 126.36856 * 13 12 10 15 15 C 1.53047 * 109.24362 * 54.85643 * 14 13 12 16 16 C 1.53032 * 109.53480 * 298.50827 * 15 14 13 17 17 H 1.09005 * 109.50270 * 301.41113 * 16 15 14 18 18 C 1.50704 * 109.49932 * 181.31850 * 16 15 14 19 19 H 1.08005 * 119.99471 * 0.16157 * 18 16 15 20 20 C 1.37874 * 120.00390 * 180.16422 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99969 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47236 * 59.99744 * 22 20 18 24 24 H 1.48499 * 109.46789 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47234 * 299.99482 * 22 20 18 26 26 C 1.46922 * 120.62732 * 175.85528 * 12 10 9 27 27 H 1.09011 * 109.46906 * 294.60721 * 1 2 3 28 28 H 1.08998 * 109.47067 * 54.60538 * 1 2 3 29 29 H 1.09005 * 109.47636 * 174.61060 * 1 2 3 30 30 H 1.08991 * 109.47237 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46909 * 300.00767 * 3 2 1 32 32 H 1.09002 * 109.47057 * 59.99585 * 3 2 1 33 33 H 1.08998 * 109.47138 * 305.88752 * 4 2 1 34 34 H 1.09002 * 109.47076 * 65.88842 * 4 2 1 35 35 H 1.08998 * 109.47149 * 185.88417 * 4 2 1 36 36 H 1.08003 * 124.79806 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.58171 * 246.20051 * 13 12 10 38 38 H 1.08998 * 109.58886 * 6.62228 * 13 12 10 39 39 H 1.08993 * 109.63765 * 294.86229 * 14 13 12 40 40 H 1.09005 * 109.45369 * 174.73772 * 14 13 12 41 41 H 1.08997 * 109.45776 * 178.48701 * 15 14 13 42 42 H 1.09002 * 109.44965 * 58.52049 * 15 14 13 43 43 H 0.97005 * 120.00399 * 180.02562 * 21 20 18 44 44 H 1.08991 * 109.59137 * 353.36817 * 26 12 10 45 45 H 1.08997 * 109.58803 * 113.80559 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 7 2.7150 -0.1074 2.1712 7 6 3.0942 -0.8216 3.1818 8 16 2.5645 -2.4369 3.0020 9 6 1.8171 -2.0303 1.4589 10 6 1.0871 -2.9520 0.5819 11 8 -0.1267 -3.0138 0.6395 12 7 1.7607 -3.7265 -0.2917 13 6 3.2155 -3.5903 -0.4458 14 6 3.8584 -4.9724 -0.2553 15 6 3.2144 -5.9663 -1.2247 16 6 1.7197 -6.0845 -0.9184 17 1 1.5843 -6.4123 0.1124 18 6 1.0926 -7.0874 -1.8522 19 1 1.6998 -7.5924 -2.5889 20 6 -0.2561 -7.3602 -1.7661 21 7 -0.9953 -6.7456 -0.8688 22 14 -1.0334 -8.6029 -2.9242 23 1 -0.3870 -9.9265 -2.7363 24 1 -2.4844 -8.7147 -2.6285 25 1 -0.8469 -8.1556 -4.3279 26 6 1.0531 -4.7188 -1.1123 27 1 -0.3633 0.4280 0.9344 28 1 -0.3633 0.5952 -0.8377 29 1 -0.3634 -1.0231 -0.0965 30 1 3.1300 1.4423 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.5930 -1.7140 -1.3034 34 1 1.7652 -0.1503 -2.1361 35 1 3.1248 -0.8135 -1.1982 36 1 3.6605 -0.4484 4.0223 37 1 3.4435 -3.2124 -1.4424 38 1 3.5995 -2.9003 0.3055 39 1 3.7030 -5.3106 0.7691 40 1 4.9274 -4.9066 -0.4585 41 1 3.6867 -6.9420 -1.1113 42 1 3.3487 -5.6145 -2.2476 43 1 -1.9442 -6.9377 -0.8079 44 1 0.0101 -4.7738 -0.8008 45 1 1.1085 -4.4311 -2.1622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:42 Heat of formation + Delta-G solvation = -18.681731 kcal Electronic energy + Delta-G solvation = -26719.503768 eV Core-core repulsion = 23248.644856 eV Total energy + Delta-G solvation = -3470.858912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93147 -40.41984 -38.35337 -37.05412 -35.33580 -33.55518 -31.89471 -31.05561 -28.34737 -28.25643 -27.31669 -26.81873 -25.74389 -23.51906 -22.94109 -21.97164 -20.61662 -19.42048 -18.79629 -18.42392 -17.81155 -17.20875 -16.56013 -16.18874 -15.94667 -15.75806 -15.29986 -15.16214 -14.78562 -14.76037 -14.58623 -14.43124 -14.26257 -13.85434 -13.53125 -13.29107 -13.17621 -12.98408 -12.85532 -12.72469 -12.59914 -12.31492 -12.27305 -11.98032 -11.94092 -11.88368 -11.68628 -11.62860 -11.31457 -11.00191 -10.92888 -10.66528 -10.53280 -10.38083 -9.85936 -9.47352 -8.11474 -6.28057 -0.52616 0.04785 0.63437 1.41716 1.42653 1.50961 1.63075 1.75110 2.16373 2.42601 3.09203 3.17480 3.52599 3.81100 3.96693 3.98105 3.98838 4.09384 4.27550 4.31211 4.38721 4.54373 4.66911 4.69405 4.72738 4.75745 4.80838 4.83173 4.85907 4.95036 5.00159 5.06502 5.14661 5.21563 5.24039 5.27261 5.32234 5.33825 5.46787 5.52781 5.60093 5.87887 5.97181 6.31572 6.50421 6.61334 6.83890 7.14908 7.42325 8.91941 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.004302 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.307594 B = 6507.522668 C = 6914.562385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 C -0.115 4.115 4 C -0.148 4.148 5 C 0.124 3.876 6 N -0.476 5.476 7 C 0.040 3.960 8 S 0.187 5.813 9 C -0.298 4.298 10 C 0.591 3.409 11 O -0.572 6.572 12 N -0.591 5.591 13 C 0.108 3.892 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.040 3.960 17 H -0.012 1.012 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.956 3.044 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.267 1.267 26 C 0.129 3.871 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.152 14.498 5.160 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.003 4.003 3 C -0.172 4.172 4 C -0.206 4.206 5 C -0.013 4.013 6 N -0.189 5.189 7 C -0.255 4.255 8 S 0.442 5.558 9 C -0.422 4.422 10 C 0.377 3.623 11 O -0.452 6.452 12 N -0.322 5.322 13 C -0.014 4.014 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.020 3.980 17 H 0.006 0.994 18 C -0.573 4.573 19 H 0.081 0.919 20 C -0.187 4.187 21 N -0.554 5.554 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.216 1.216 25 H -0.192 1.192 26 C 0.007 3.993 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.266 0.734 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.633 14.113 5.924 19.846 hybrid contribution -1.482 -0.683 -1.025 1.927 sum 11.151 13.430 4.899 18.130 Atomic orbital electron populations 1.22013 0.93947 1.02291 1.02131 1.19310 0.95060 0.96619 0.89353 1.21607 1.01378 0.92074 1.02141 1.22105 1.01619 1.00210 0.96619 1.20575 0.95878 0.87976 0.96864 1.66056 1.13657 1.37187 1.02015 1.29416 1.01883 0.92888 1.01316 1.84120 1.45520 1.13769 1.12372 1.25255 1.13865 0.99455 1.03625 1.17122 0.86064 0.79417 0.79665 1.90798 1.15324 1.68375 1.70733 1.48421 1.09236 1.35893 1.38613 1.22036 0.78301 0.98314 1.02752 1.21996 1.00748 0.94055 0.99569 1.21512 0.95335 0.98543 0.98781 1.18902 0.92602 0.91557 0.94889 0.99424 1.21472 0.93915 1.23350 1.18582 0.91858 1.25855 0.98164 0.97859 0.96834 1.70062 1.06631 1.43189 1.35540 0.85646 0.76979 0.79702 0.79572 1.19337 1.21623 1.19180 1.21789 0.98653 0.87333 0.91516 0.93154 0.90311 0.93854 0.91824 0.91131 0.92515 0.93970 0.90213 0.91188 0.73418 0.89926 0.89533 0.92882 0.87804 0.92653 0.92253 0.93137 0.90330 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.26 71.98 0.59 -3.83 16 2 C 0.00 -0.02 0.76 -52.93 -0.04 -0.06 16 3 C -0.11 -2.39 7.82 71.98 0.56 -1.82 16 4 C -0.15 -3.86 7.32 71.98 0.53 -3.33 16 5 C 0.12 3.53 5.45 42.10 0.23 3.76 16 6 N -0.48 -11.45 9.52 -190.39 -1.81 -13.27 16 7 C 0.04 0.73 12.22 130.60 1.60 2.33 16 8 S 0.19 4.49 23.15 -56.49 -1.31 3.19 16 9 C -0.30 -9.69 3.94 23.88 0.09 -9.60 16 10 C 0.59 24.67 4.75 86.45 0.41 25.08 16 11 O -0.57 -29.55 14.61 -4.28 -0.06 -29.62 16 12 N -0.59 -23.68 2.03 -822.79 -1.67 -25.35 16 13 C 0.11 3.24 5.12 86.51 0.44 3.68 16 14 C -0.13 -3.71 6.10 30.82 0.19 -3.52 16 15 C -0.10 -3.92 5.10 30.62 0.16 -3.76 16 16 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 17 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 18 C -0.53 -28.98 8.56 25.60 0.22 -28.76 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.01 0.69 5.30 84.65 0.45 1.14 16 21 N -0.92 -55.28 11.39 21.45 0.24 -55.04 16 22 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.13 6.34 5.39 86.37 0.47 6.81 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.66 5.23 -2.38 -0.01 1.65 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 33 H 0.04 1.37 4.68 -2.39 -0.01 1.36 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.25 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 38 H 0.09 2.27 6.27 -2.39 -0.01 2.26 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 44 H 0.08 4.65 5.14 -2.39 -0.01 4.64 16 45 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.86 359.12 4.27 -67.59 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.98 Total: 16.51 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.87 Total: -9.94 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -3.24 Total: -93.66 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.06 Total: -29.62 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.31 Total: 3.19 kcal Total: -71.86 4.27 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.913 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds