Wall clock time and date at job start Tue Mar 31 2020 13:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.53003 * 109.47161 * 239.99578 * 2 1 3 5 5 C 1.50703 * 109.46965 * 119.99800 * 2 1 3 6 6 N 1.30940 * 122.90214 * 235.82625 * 5 2 1 7 7 C 1.29436 * 117.36436 * 180.02562 * 6 5 2 8 8 S 1.70958 * 110.38894 * 0.02562 * 7 6 5 9 9 C 1.35658 * 122.90568 * 55.87126 * 5 2 1 10 10 C 1.46685 * 126.12991 * 0.22160 * 9 5 2 11 11 O 1.21689 * 119.99714 * 82.76436 * 10 9 5 12 12 N 1.34773 * 120.00097 * 262.75674 * 10 9 5 13 13 C 1.46924 * 120.63085 * 4.96909 * 12 10 9 14 14 C 1.52759 * 109.00885 * 233.58067 * 13 12 10 15 15 C 1.53041 * 109.38519 * 305.58952 * 14 13 12 16 16 C 1.53039 * 109.53739 * 61.23944 * 15 14 13 17 17 H 1.08999 * 109.49973 * 58.58887 * 16 15 14 18 18 C 1.50702 * 109.52252 * 178.66957 * 16 15 14 19 19 H 1.07995 * 120.00108 * 359.85089 * 18 16 15 20 20 C 1.37886 * 119.99784 * 179.85412 * 18 16 15 21 21 N 1.31513 * 119.99681 * 359.97438 * 20 18 16 22 22 Si 1.86792 * 119.99823 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47410 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47368 * 120.00160 * 22 20 18 25 25 H 1.48507 * 109.46937 * 239.99905 * 22 20 18 26 26 C 1.46933 * 120.62970 * 185.24443 * 12 10 9 27 27 H 1.09003 * 109.47403 * 292.92930 * 1 2 3 28 28 H 1.08998 * 109.47511 * 52.93167 * 1 2 3 29 29 H 1.09007 * 109.47035 * 172.93608 * 1 2 3 30 30 H 1.09000 * 109.47392 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46909 * 300.00121 * 3 2 1 32 32 H 1.08995 * 109.47372 * 59.99711 * 3 2 1 33 33 H 1.08996 * 109.47329 * 306.52802 * 4 2 1 34 34 H 1.08997 * 109.46635 * 66.52287 * 4 2 1 35 35 H 1.08998 * 109.46744 * 186.52291 * 4 2 1 36 36 H 1.07997 * 124.80297 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.58881 * 353.41993 * 13 12 10 38 38 H 1.09004 * 109.58470 * 113.84304 * 13 12 10 39 39 H 1.09006 * 109.56447 * 185.55646 * 14 13 12 40 40 H 1.08995 * 109.38650 * 65.51378 * 14 13 12 41 41 H 1.09006 * 109.46102 * 301.22178 * 15 14 13 42 42 H 1.08994 * 109.46185 * 181.25905 * 15 14 13 43 43 H 0.97003 * 119.99419 * 180.02562 * 21 20 18 44 44 H 1.08993 * 109.59168 * 246.15943 * 26 12 10 45 45 H 1.09002 * 109.58518 * 6.44788 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.8515 -0.1551 2.0878 7 6 3.2152 -0.8637 3.1080 8 16 2.4871 -2.4094 3.0496 9 6 1.6754 -1.9808 1.5454 10 6 0.7795 -2.8450 0.7694 11 8 1.2102 -3.4702 -0.1816 12 7 -0.5205 -2.9467 1.1098 13 6 -1.0797 -2.1171 2.1858 14 6 -1.7699 -3.0225 3.2045 15 6 -2.7983 -3.9010 2.4886 16 6 -2.0894 -4.7829 1.4582 17 1 -1.3421 -5.3986 1.9589 18 6 -3.0980 -5.6712 0.7765 19 1 -4.1407 -5.6148 1.0520 20 6 -2.6895 -6.5560 -0.1990 21 7 -1.4198 -6.6243 -0.5347 22 14 -3.9395 -7.6575 -1.0435 23 1 -5.2906 -7.3891 -0.4887 24 1 -3.9388 -7.3794 -2.5022 25 1 -3.5829 -9.0801 -0.8106 26 6 -1.4042 -3.8936 0.4159 27 1 -0.3634 0.4004 0.9465 28 1 -0.3634 0.6194 -0.8200 29 1 -0.3633 -1.0199 -0.1264 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.5844 -1.7097 -1.3095 34 1 1.7751 -0.1446 -2.1353 35 1 3.1237 -0.8235 -1.1927 36 1 3.8845 -0.5266 3.8857 37 1 -0.2780 -1.5638 2.6748 38 1 -1.8066 -1.4198 1.7694 39 1 -2.2724 -2.4115 3.9544 40 1 -1.0260 -3.6546 3.6892 41 1 -3.5282 -3.2680 1.9839 42 1 -3.3073 -4.5317 3.2175 43 1 -1.1325 -7.2465 -1.2212 44 1 -2.1580 -3.3441 -0.1478 45 1 -0.8168 -4.5103 -0.2643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:46 Heat of formation + Delta-G solvation = -1.916538 kcal Electronic energy + Delta-G solvation = -26711.923659 eV Core-core repulsion = 23241.791741 eV Total energy + Delta-G solvation = -3470.131919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69768 -39.02726 -36.76672 -35.97049 -33.47248 -31.90082 -30.46141 -29.59364 -27.33012 -27.10335 -25.97309 -25.08551 -24.34325 -21.94034 -21.73164 -20.63406 -19.09153 -18.06579 -17.65122 -16.78927 -16.09789 -15.79932 -14.93458 -14.81720 -14.69722 -14.46645 -13.99457 -13.78037 -13.59698 -13.47042 -13.22490 -12.79298 -12.67222 -12.35659 -12.26216 -12.05197 -11.95434 -11.91972 -11.45012 -11.06876 -10.98171 -10.92668 -10.85586 -10.59721 -10.49235 -10.43518 -10.29383 -9.96637 -9.85064 -9.57682 -9.30021 -9.16162 -8.98122 -8.77177 -8.48312 -7.84876 -6.04798 -4.13273 0.53170 1.15951 1.65202 2.70830 3.20821 3.27492 3.36403 3.39091 3.64499 4.07843 4.39571 4.74241 4.91160 4.96055 5.05183 5.24991 5.27685 5.30611 5.39424 5.47753 5.63192 5.70997 5.77504 5.87256 5.90083 5.94461 5.97801 6.07798 6.11856 6.17110 6.25536 6.31392 6.41919 6.53888 6.56148 6.60246 6.79257 6.90766 7.06323 7.16544 7.56379 7.65092 7.79994 7.92444 8.11229 8.32229 8.66704 8.91105 9.52820 11.00760 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.004298 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.347399 B = 6513.792463 C = 6921.741971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.005 3.995 3 C -0.124 4.124 4 C -0.151 4.151 5 C 0.111 3.889 6 N -0.460 5.460 7 C 0.004 3.996 8 S 0.176 5.824 9 C -0.253 4.253 10 C 0.588 3.412 11 O -0.516 6.516 12 N -0.590 5.590 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.113 3.887 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.201 0.799 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.264 0.736 44 H 0.046 0.954 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 14.107 6.980 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.002 3.998 3 C -0.182 4.182 4 C -0.208 4.208 5 C -0.025 4.025 6 N -0.173 5.173 7 C -0.292 4.292 8 S 0.431 5.569 9 C -0.378 4.378 10 C 0.371 3.629 11 O -0.393 6.393 12 N -0.323 5.323 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.148 4.148 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.007 4.007 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.218 0.782 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.152 13.318 7.008 16.662 hybrid contribution -0.751 -0.159 -0.916 1.195 sum 6.400 13.159 6.092 15.850 Atomic orbital electron populations 1.22131 0.93170 1.03574 1.01954 1.19206 0.95651 0.95116 0.89807 1.21685 1.01422 0.93805 1.01281 1.22090 1.01362 1.02085 0.95278 1.20382 0.95248 0.89816 0.97030 1.65952 1.12913 1.35779 1.02689 1.28546 1.05129 0.94539 1.00995 1.84156 1.38678 1.16628 1.17442 1.25673 1.09716 1.00213 1.02173 1.16729 0.81699 0.80786 0.83646 1.90841 1.75494 1.44980 1.27936 1.48499 1.08454 1.39750 1.35558 1.21603 0.97695 0.93263 0.88881 1.21888 0.99435 0.98596 0.97340 1.21628 0.96888 0.97656 0.98629 1.18982 0.95004 0.92199 0.91721 0.95298 1.21104 0.94059 1.19901 1.20791 0.92222 1.25050 0.95211 0.96919 0.96795 1.69881 1.14247 1.36693 1.31030 0.86532 0.81568 0.80487 0.79415 1.19765 1.20934 1.21002 1.22408 0.92104 0.89070 0.97079 0.92552 0.91706 0.91059 0.92237 0.92735 0.92451 0.90034 0.92127 0.92806 0.78246 0.91635 0.91633 0.92052 0.92134 0.93054 0.92869 0.92638 0.93559 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 7.46 37.16 0.28 -1.77 16 2 C 0.00 0.07 0.76 -155.66 -0.12 -0.05 16 3 C -0.12 -1.46 7.81 37.16 0.29 -1.17 16 4 C -0.15 -2.24 8.25 37.16 0.31 -1.94 16 5 C 0.11 1.67 5.44 -83.89 -0.46 1.21 16 6 N -0.46 -6.27 9.52 -11.53 -0.11 -6.38 16 7 C 0.00 0.04 12.22 51.75 0.63 0.67 16 8 S 0.18 2.29 23.13 -107.50 -2.49 -0.20 16 9 C -0.25 -4.16 3.95 -37.10 -0.15 -4.31 16 10 C 0.59 11.71 4.74 -12.85 -0.06 11.65 16 11 O -0.52 -12.29 14.58 5.20 0.08 -12.21 16 12 N -0.59 -11.46 2.10 -174.57 -0.37 -11.82 16 13 C 0.11 1.72 5.20 -3.93 -0.02 1.70 16 14 C -0.13 -2.11 6.06 -26.83 -0.16 -2.28 16 15 C -0.11 -2.11 5.11 -26.69 -0.14 -2.25 16 16 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 17 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -13.68 8.57 -34.44 -0.29 -13.98 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.11 11.39 55.43 0.63 -24.48 16 22 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.11 2.63 5.39 -3.70 -0.02 2.61 16 27 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.15 4.83 -51.93 -0.25 0.89 16 30 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.48 5.18 -51.93 -0.27 1.21 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.07 0.94 6.25 -51.93 -0.32 0.61 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.12 3.38 5.15 -51.93 -0.27 3.11 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -30.22 359.51 -9.06 -39.27 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.99 Total: 2.10 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.21 Total: -7.54 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.16 Total: -42.68 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.49 Total: -0.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.22 -9.06 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.358 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds