Wall clock time and date at job start Tue Mar 31 2020 13:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.53003 * 109.47161 * 239.99578 * 2 1 3 5 5 C 1.50703 * 109.46965 * 119.99800 * 2 1 3 6 6 N 1.30940 * 122.90214 * 235.82625 * 5 2 1 7 7 C 1.29436 * 117.36436 * 180.02562 * 6 5 2 8 8 S 1.70958 * 110.38894 * 0.02562 * 7 6 5 9 9 C 1.35658 * 122.90568 * 55.87126 * 5 2 1 10 10 C 1.46685 * 126.12991 * 0.22160 * 9 5 2 11 11 O 1.21689 * 119.99714 * 82.76436 * 10 9 5 12 12 N 1.34773 * 120.00097 * 262.75674 * 10 9 5 13 13 C 1.46924 * 120.63085 * 4.96909 * 12 10 9 14 14 C 1.52759 * 109.00885 * 233.58067 * 13 12 10 15 15 C 1.53041 * 109.38519 * 305.58952 * 14 13 12 16 16 C 1.53039 * 109.53739 * 61.23944 * 15 14 13 17 17 H 1.08999 * 109.49973 * 58.58887 * 16 15 14 18 18 C 1.50702 * 109.52252 * 178.66957 * 16 15 14 19 19 H 1.07995 * 120.00108 * 359.85089 * 18 16 15 20 20 C 1.37886 * 119.99784 * 179.85412 * 18 16 15 21 21 N 1.31513 * 119.99681 * 359.97438 * 20 18 16 22 22 Si 1.86792 * 119.99823 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47410 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47368 * 120.00160 * 22 20 18 25 25 H 1.48507 * 109.46937 * 239.99905 * 22 20 18 26 26 C 1.46933 * 120.62970 * 185.24443 * 12 10 9 27 27 H 1.09003 * 109.47403 * 292.92930 * 1 2 3 28 28 H 1.08998 * 109.47511 * 52.93167 * 1 2 3 29 29 H 1.09007 * 109.47035 * 172.93608 * 1 2 3 30 30 H 1.09000 * 109.47392 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46909 * 300.00121 * 3 2 1 32 32 H 1.08995 * 109.47372 * 59.99711 * 3 2 1 33 33 H 1.08996 * 109.47329 * 306.52802 * 4 2 1 34 34 H 1.08997 * 109.46635 * 66.52287 * 4 2 1 35 35 H 1.08998 * 109.46744 * 186.52291 * 4 2 1 36 36 H 1.07997 * 124.80297 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.58881 * 353.41993 * 13 12 10 38 38 H 1.09004 * 109.58470 * 113.84304 * 13 12 10 39 39 H 1.09006 * 109.56447 * 185.55646 * 14 13 12 40 40 H 1.08995 * 109.38650 * 65.51378 * 14 13 12 41 41 H 1.09006 * 109.46102 * 301.22178 * 15 14 13 42 42 H 1.08994 * 109.46185 * 181.25905 * 15 14 13 43 43 H 0.97003 * 119.99419 * 180.02562 * 21 20 18 44 44 H 1.08993 * 109.59168 * 246.15943 * 26 12 10 45 45 H 1.09002 * 109.58518 * 6.44788 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.8515 -0.1551 2.0878 7 6 3.2152 -0.8637 3.1080 8 16 2.4871 -2.4094 3.0496 9 6 1.6754 -1.9808 1.5454 10 6 0.7795 -2.8450 0.7694 11 8 1.2102 -3.4702 -0.1816 12 7 -0.5205 -2.9467 1.1098 13 6 -1.0797 -2.1171 2.1858 14 6 -1.7699 -3.0225 3.2045 15 6 -2.7983 -3.9010 2.4886 16 6 -2.0894 -4.7829 1.4582 17 1 -1.3421 -5.3986 1.9589 18 6 -3.0980 -5.6712 0.7765 19 1 -4.1407 -5.6148 1.0520 20 6 -2.6895 -6.5560 -0.1990 21 7 -1.4198 -6.6243 -0.5347 22 14 -3.9395 -7.6575 -1.0435 23 1 -5.2906 -7.3891 -0.4887 24 1 -3.9388 -7.3794 -2.5022 25 1 -3.5829 -9.0801 -0.8106 26 6 -1.4042 -3.8936 0.4159 27 1 -0.3634 0.4004 0.9465 28 1 -0.3634 0.6194 -0.8200 29 1 -0.3633 -1.0199 -0.1264 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.5844 -1.7097 -1.3095 34 1 1.7751 -0.1446 -2.1353 35 1 3.1237 -0.8235 -1.1927 36 1 3.8845 -0.5266 3.8857 37 1 -0.2780 -1.5638 2.6748 38 1 -1.8066 -1.4198 1.7694 39 1 -2.2724 -2.4115 3.9544 40 1 -1.0260 -3.6546 3.6892 41 1 -3.5282 -3.2680 1.9839 42 1 -3.3073 -4.5317 3.2175 43 1 -1.1325 -7.2465 -1.2212 44 1 -2.1580 -3.3441 -0.1478 45 1 -0.8168 -4.5103 -0.2643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:45 Heat of formation + Delta-G solvation = -19.232682 kcal Electronic energy + Delta-G solvation = -26712.674544 eV Core-core repulsion = 23241.791741 eV Total energy + Delta-G solvation = -3470.882803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92663 -40.42817 -38.37174 -37.05235 -35.34265 -33.56238 -31.92138 -31.06870 -28.34706 -28.25513 -27.32196 -26.82639 -25.74925 -23.51306 -22.94599 -21.97665 -20.61441 -19.41648 -18.79662 -18.43144 -17.81268 -17.21402 -16.55922 -16.19199 -15.93522 -15.75966 -15.30123 -15.17989 -14.79394 -14.76896 -14.58841 -14.43766 -14.27282 -13.85281 -13.54821 -13.29281 -13.18627 -12.97834 -12.91605 -12.69600 -12.59547 -12.31402 -12.23818 -11.98011 -11.93423 -11.87542 -11.68624 -11.63688 -11.31180 -11.00826 -10.91683 -10.66606 -10.54925 -10.38097 -9.86088 -9.47833 -8.12246 -6.28513 -0.52738 0.04618 0.63381 1.39522 1.41861 1.53247 1.62727 1.75840 2.15827 2.42191 3.09124 3.17025 3.52542 3.81130 3.96378 3.97939 3.98721 4.10770 4.27348 4.31607 4.38713 4.54261 4.67084 4.69900 4.72653 4.75683 4.80715 4.83217 4.85970 4.95238 5.00115 5.06407 5.14685 5.21336 5.23989 5.27282 5.32406 5.33940 5.46723 5.52934 5.60181 5.87561 5.96834 6.31316 6.50415 6.61299 6.83951 7.14824 7.41945 8.91625 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.004298 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.347399 B = 6513.792463 C = 6921.741971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 C -0.115 4.115 4 C -0.146 4.146 5 C 0.124 3.876 6 N -0.477 5.477 7 C 0.040 3.960 8 S 0.186 5.814 9 C -0.298 4.298 10 C 0.591 3.409 11 O -0.571 6.571 12 N -0.591 5.591 13 C 0.108 3.892 14 C -0.126 4.126 15 C -0.104 4.104 16 C 0.039 3.961 17 H -0.012 1.012 18 C -0.533 4.533 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.956 3.044 23 H -0.260 1.260 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.129 3.871 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.250 0.750 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.259 0.741 44 H 0.040 0.960 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 16.899 9.148 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.004 4.004 3 C -0.172 4.172 4 C -0.204 4.204 5 C -0.013 4.013 6 N -0.189 5.189 7 C -0.255 4.255 8 S 0.442 5.558 9 C -0.422 4.422 10 C 0.378 3.622 11 O -0.452 6.452 12 N -0.322 5.322 13 C -0.014 4.014 14 C -0.164 4.164 15 C -0.142 4.142 16 C 0.020 3.980 17 H 0.006 0.994 18 C -0.571 4.571 19 H 0.082 0.918 20 C -0.188 4.188 21 N -0.555 5.555 22 Si 0.782 3.218 23 H -0.184 1.184 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.007 3.993 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.266 0.734 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.974 16.131 9.221 19.846 hybrid contribution -0.616 -0.998 -1.533 1.930 sum 6.357 15.133 7.688 18.126 Atomic orbital electron populations 1.22082 0.92976 1.02043 1.03303 1.19313 0.95890 0.96320 0.88830 1.21609 1.01135 0.92053 1.02403 1.22015 1.00721 1.00566 0.97070 1.20575 0.94379 0.89209 0.97125 1.66058 1.13493 1.35944 1.03426 1.29418 1.02950 0.92750 1.00376 1.84129 1.38480 1.17843 1.15369 1.25256 1.11638 1.00711 1.04583 1.17119 0.81879 0.80236 0.83016 1.90799 1.76476 1.47470 1.30450 1.48411 1.08253 1.39364 1.36147 1.21847 0.98629 0.93035 0.87863 1.21854 0.98478 0.98393 0.97715 1.21509 0.97527 0.97541 0.97581 1.18912 0.93968 0.92468 0.92672 0.99385 1.21529 0.94699 1.20213 1.20656 0.91845 1.25861 0.96757 0.98500 0.97658 1.70079 1.16277 1.37454 1.31659 0.85533 0.79758 0.78412 0.78142 1.18364 1.20947 1.20963 1.21788 0.91698 0.89276 0.96516 0.91231 0.90141 0.94072 0.92543 0.91113 0.91810 0.93797 0.90296 0.93256 0.73421 0.89552 0.89991 0.87714 0.92903 0.92258 0.92629 0.93149 0.94136 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 7.46 71.98 0.54 -3.27 16 2 C 0.00 -0.02 0.76 -52.93 -0.04 -0.06 16 3 C -0.11 -2.39 7.81 71.98 0.56 -1.82 16 4 C -0.15 -4.43 8.25 71.98 0.59 -3.83 16 5 C 0.12 3.54 5.44 42.09 0.23 3.77 16 6 N -0.48 -11.47 9.52 -190.40 -1.81 -13.29 16 7 C 0.04 0.74 12.22 130.60 1.60 2.33 16 8 S 0.19 4.49 23.13 -56.49 -1.31 3.19 16 9 C -0.30 -9.70 3.95 23.88 0.09 -9.60 16 10 C 0.59 24.68 4.74 86.45 0.41 25.09 16 11 O -0.57 -29.51 14.58 -4.31 -0.06 -29.57 16 12 N -0.59 -23.70 2.10 -824.43 -1.73 -25.43 16 13 C 0.11 3.25 5.20 86.22 0.45 3.69 16 14 C -0.13 -3.72 6.06 30.53 0.19 -3.54 16 15 C -0.10 -3.91 5.11 30.62 0.16 -3.75 16 16 C 0.04 1.93 2.25 -11.46 -0.03 1.91 16 17 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 18 C -0.53 -28.85 8.57 25.60 0.22 -28.63 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.65 5.30 84.66 0.45 1.10 16 21 N -0.92 -55.27 11.39 21.45 0.24 -55.02 16 22 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 C 0.13 6.35 5.39 86.36 0.47 6.82 16 27 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.33 4.83 -2.38 -0.01 1.32 16 30 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.69 5.18 -2.39 -0.01 1.67 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.25 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.09 2.27 6.25 -2.39 -0.01 2.25 16 38 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 4.63 5.15 -2.39 -0.01 4.62 16 Total: -1.00 -71.95 359.51 4.22 -67.72 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.98 Total: 16.23 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.88 Total: -9.81 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -3.30 Total: -93.73 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.57 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.31 Total: 3.19 kcal Total: -71.95 4.22 -67.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.492 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds