Wall clock time and date at job start Tue Mar 31 2020 13:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.52998 * 109.47192 * 119.99911 * 2 1 3 5 5 C 1.50698 * 109.47333 * 65.00134 * 4 2 1 6 6 N 1.28646 * 124.72092 * 90.00002 * 5 4 2 7 7 C 1.33563 * 115.76711 * 180.02562 * 6 5 4 8 8 C 1.47262 * 123.14088 * 179.97438 * 7 6 5 9 9 O 1.21637 * 120.00256 * 172.99946 * 8 7 6 10 10 N 1.34773 * 120.00494 * 353.00621 * 8 7 6 11 11 C 1.46932 * 120.62698 * 352.75162 * 10 8 7 12 12 C 1.53196 * 108.89226 * 126.46307 * 11 10 8 13 13 C 1.53035 * 109.31280 * 54.56283 * 12 11 10 14 14 C 1.53037 * 109.53991 * 298.63658 * 13 12 11 15 15 H 1.09003 * 109.49821 * 301.38014 * 14 13 12 16 16 C 1.50702 * 109.49766 * 181.31707 * 14 13 12 17 17 H 1.08001 * 120.00264 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99816 * 179.97438 * 16 14 13 19 19 N 1.31510 * 120.00424 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99723 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46923 * 90.00517 * 20 18 16 22 22 H 1.48507 * 109.47352 * 209.99895 * 20 18 16 23 23 H 1.48492 * 109.47427 * 330.00218 * 20 18 16 24 24 C 1.46959 * 120.65990 * 172.57221 * 10 8 7 25 25 C 1.35210 * 113.71553 * 0.24247 * 7 6 5 26 26 S 1.70772 * 124.71969 * 270.00260 * 5 4 2 27 27 H 1.09006 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47447 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47557 * 60.00424 * 1 2 3 30 30 H 1.09005 * 109.47113 * 239.99858 * 2 1 3 31 31 H 1.08998 * 109.47022 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47080 * 299.99853 * 3 2 1 33 33 H 1.08995 * 109.46738 * 59.99815 * 3 2 1 34 34 H 1.08999 * 109.47404 * 305.00183 * 4 2 1 35 35 H 1.09001 * 109.47297 * 185.00374 * 4 2 1 36 36 H 1.08998 * 109.58370 * 6.60897 * 11 10 8 37 37 H 1.08996 * 109.59001 * 246.31802 * 11 10 8 38 38 H 1.08994 * 109.49701 * 174.52151 * 12 11 10 39 39 H 1.09000 * 109.49812 * 294.61497 * 12 11 10 40 40 H 1.08998 * 109.45964 * 58.65826 * 13 12 11 41 41 H 1.09003 * 109.45906 * 178.63000 * 13 12 11 42 42 H 0.96999 * 120.00438 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.47182 * 113.75399 * 24 10 8 44 44 H 1.09004 * 109.70783 * 353.46238 * 24 10 8 45 45 H 1.07997 * 125.57992 * 179.75598 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 2.3511 -3.1066 0.6595 7 6 1.8242 -4.3331 0.7046 8 6 2.4965 -5.5190 0.1477 9 8 2.0274 -6.6262 0.3310 10 7 3.6317 -5.3778 -0.5648 11 6 4.1253 -4.0428 -0.9297 12 6 5.5793 -3.9078 -0.4665 13 6 6.4032 -5.0616 -1.0427 14 6 5.8528 -6.3923 -0.5248 15 1 5.8903 -6.4022 0.5646 16 6 6.6847 -7.5259 -1.0670 17 1 7.5222 -7.3185 -1.7166 18 6 6.3766 -8.8278 -0.7337 19 7 5.3565 -9.0805 0.0568 20 14 7.4074 -10.2330 -1.4064 21 1 8.5241 -10.5199 -0.4705 22 1 6.5596 -11.4437 -1.5513 23 1 7.9579 -9.8527 -2.7321 24 6 4.4019 -6.5554 -0.9887 25 6 0.6133 -4.3831 1.3041 26 16 0.1847 -2.8088 1.8138 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 3.5148 -3.2820 -0.4433 37 1 4.0732 -3.9168 -2.0111 38 1 5.9862 -2.9594 -0.8171 39 1 5.6188 -3.9409 0.6223 40 1 6.3431 -5.0426 -2.1309 41 1 7.4433 -4.9544 -0.7346 42 1 5.1395 -9.9964 0.2910 43 1 4.3727 -6.6369 -2.0752 44 1 3.9747 -7.4539 -0.5432 45 1 0.0161 -5.2725 1.4407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:54 Heat of formation + Delta-G solvation = -0.640552 kcal Electronic energy + Delta-G solvation = -25604.325603 eV Core-core repulsion = 22134.249015 eV Total energy + Delta-G solvation = -3470.076588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54703 -38.55433 -36.79273 -36.40390 -33.25777 -31.65442 -31.15921 -29.68392 -27.91015 -27.50233 -26.00642 -24.82543 -23.64293 -21.64061 -21.45789 -20.03986 -19.64110 -18.90301 -17.74910 -16.40622 -15.97034 -15.60402 -15.41262 -15.15954 -14.79550 -14.37067 -14.32244 -13.69442 -13.61099 -13.37437 -13.29025 -12.92533 -12.61561 -12.56639 -12.52439 -12.15777 -12.11056 -11.79299 -11.72538 -11.43176 -11.23052 -11.01528 -10.94268 -10.92682 -10.50099 -10.36480 -10.17012 -9.84026 -9.65861 -9.49809 -9.17857 -9.02439 -8.84805 -8.58206 -8.36958 -7.61674 -5.95561 -4.03944 0.54626 1.17802 1.57564 2.12833 3.33405 3.40551 3.43291 3.68250 3.86345 4.01706 4.46571 4.52028 4.55030 4.66862 4.98057 5.16879 5.23259 5.29806 5.33541 5.34697 5.35910 5.48850 5.54371 5.64915 5.65744 5.79149 5.81581 5.87683 5.95541 6.02749 6.04480 6.33198 6.46905 6.66758 6.79631 6.86002 6.99644 7.07961 7.23397 7.42087 7.47944 7.69586 7.93814 8.05376 8.35108 8.44105 8.87100 9.00894 9.61245 11.09931 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003367 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.966320 B = 8314.350995 C = 9309.158872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.040 4.040 5 C 0.025 3.975 6 N -0.428 5.428 7 C 0.027 3.973 8 C 0.577 3.423 9 O -0.536 6.536 10 N -0.582 5.582 11 C 0.057 3.943 12 C -0.125 4.125 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.112 3.888 25 C -0.232 4.232 26 S 0.192 5.808 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.263 0.737 43 H 0.042 0.958 44 H 0.120 0.880 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 21.547 2.726 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.080 4.080 5 C -0.254 4.254 6 N -0.143 5.143 7 C -0.106 4.106 8 C 0.360 3.640 9 O -0.414 6.414 10 N -0.312 5.312 11 C -0.066 4.066 12 C -0.163 4.163 13 C -0.150 4.150 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.519 5.519 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.373 4.373 26 S 0.449 5.551 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.163 0.837 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.138 0.862 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.139 21.317 3.181 24.736 hybrid contribution 1.159 -1.778 -0.795 2.267 sum -10.980 19.538 2.386 22.539 Atomic orbital electron populations 1.22013 0.95059 1.02197 1.02173 1.21118 0.96099 0.96314 0.97731 1.21816 1.01380 0.95093 1.01998 1.20407 1.03215 0.85076 0.99335 1.27397 0.95733 1.01021 1.01215 1.66688 1.30891 0.99059 1.17682 1.20860 0.93870 0.92252 1.03642 1.17144 0.81289 0.86139 0.79421 1.90812 1.64950 1.25068 1.60586 1.48312 1.22354 1.09259 1.51256 1.23019 0.97279 0.86641 0.99694 1.21823 0.95392 0.98391 1.00690 1.21653 0.98130 0.95895 0.99329 1.18953 0.90901 0.91206 0.96705 0.95425 1.21102 1.13648 0.90640 1.30387 0.92356 1.25062 0.95174 0.98964 0.94884 1.69887 1.26985 1.20141 1.34934 0.86586 0.80132 0.81887 0.79350 1.20708 1.21192 1.19905 1.22335 0.93395 0.87322 0.97746 1.26550 1.01161 1.03956 1.05654 1.82678 1.21349 0.97667 1.53425 0.92467 0.92346 0.92212 0.90260 0.92218 0.92329 0.92519 0.89523 0.88397 0.83671 0.93562 0.92696 0.92558 0.93410 0.93318 0.92692 0.93957 0.86166 0.79484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.89 37.16 0.33 -0.69 16 2 C -0.09 -0.65 2.91 -90.62 -0.26 -0.92 16 3 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 4 C -0.04 -0.31 5.26 -27.89 -0.15 -0.45 16 5 C 0.02 0.27 5.97 -13.61 -0.08 0.19 16 6 N -0.43 -6.34 6.72 -8.51 -0.06 -6.39 16 7 C 0.03 0.48 6.52 -84.53 -0.55 -0.08 16 8 C 0.58 12.78 7.65 -12.59 -0.10 12.69 16 9 O -0.54 -13.70 16.19 5.24 0.08 -13.62 16 10 N -0.58 -12.97 2.98 -174.06 -0.52 -13.49 16 11 C 0.06 1.06 6.27 -3.71 -0.02 1.03 16 12 C -0.12 -2.28 6.08 -26.61 -0.16 -2.45 16 13 C -0.11 -2.41 5.11 -26.69 -0.14 -2.55 16 14 C 0.04 1.08 2.25 -91.65 -0.21 0.87 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.57 8.56 -34.44 -0.29 -14.86 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.39 11.40 55.43 0.63 -25.76 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.11 2.89 5.38 -3.69 -0.02 2.87 16 25 C -0.23 -3.28 10.62 29.65 0.31 -2.96 16 26 S 0.19 1.87 21.37 -107.50 -2.30 -0.42 16 27 H 0.06 0.43 6.13 -51.93 -0.32 0.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.15 2.44 3.55 -90.57 -0.32 2.12 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.12 3.56 5.19 -51.93 -0.27 3.29 16 45 H 0.19 2.53 8.04 -52.49 -0.42 2.11 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -32.76 366.58 -9.96 -42.72 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.21 Total: 0.80 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.09 Total: -6.10 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.06 Total: -45.64 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.30 Total: -0.42 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.76 -9.96 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.080 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds