Wall clock time and date at job start Tue Mar 31 2020 13:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.52998 * 109.47192 * 119.99911 * 2 1 3 5 5 C 1.50698 * 109.47333 * 65.00134 * 4 2 1 6 6 N 1.28646 * 124.72092 * 90.00002 * 5 4 2 7 7 C 1.33563 * 115.76711 * 180.02562 * 6 5 4 8 8 C 1.47262 * 123.14088 * 179.97438 * 7 6 5 9 9 O 1.21637 * 120.00256 * 172.99946 * 8 7 6 10 10 N 1.34773 * 120.00494 * 353.00621 * 8 7 6 11 11 C 1.46932 * 120.62698 * 352.75162 * 10 8 7 12 12 C 1.53196 * 108.89226 * 126.46307 * 11 10 8 13 13 C 1.53035 * 109.31280 * 54.56283 * 12 11 10 14 14 C 1.53037 * 109.53991 * 298.63658 * 13 12 11 15 15 H 1.09003 * 109.49821 * 301.38014 * 14 13 12 16 16 C 1.50702 * 109.49766 * 181.31707 * 14 13 12 17 17 H 1.08001 * 120.00264 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99816 * 179.97438 * 16 14 13 19 19 N 1.31510 * 120.00424 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99723 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46923 * 90.00517 * 20 18 16 22 22 H 1.48507 * 109.47352 * 209.99895 * 20 18 16 23 23 H 1.48492 * 109.47427 * 330.00218 * 20 18 16 24 24 C 1.46959 * 120.65990 * 172.57221 * 10 8 7 25 25 C 1.35210 * 113.71553 * 0.24247 * 7 6 5 26 26 S 1.70772 * 124.71969 * 270.00260 * 5 4 2 27 27 H 1.09006 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47447 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47557 * 60.00424 * 1 2 3 30 30 H 1.09005 * 109.47113 * 239.99858 * 2 1 3 31 31 H 1.08998 * 109.47022 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47080 * 299.99853 * 3 2 1 33 33 H 1.08995 * 109.46738 * 59.99815 * 3 2 1 34 34 H 1.08999 * 109.47404 * 305.00183 * 4 2 1 35 35 H 1.09001 * 109.47297 * 185.00374 * 4 2 1 36 36 H 1.08998 * 109.58370 * 6.60897 * 11 10 8 37 37 H 1.08996 * 109.59001 * 246.31802 * 11 10 8 38 38 H 1.08994 * 109.49701 * 174.52151 * 12 11 10 39 39 H 1.09000 * 109.49812 * 294.61497 * 12 11 10 40 40 H 1.08998 * 109.45964 * 58.65826 * 13 12 11 41 41 H 1.09003 * 109.45906 * 178.63000 * 13 12 11 42 42 H 0.96999 * 120.00438 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.47182 * 113.75399 * 24 10 8 44 44 H 1.09004 * 109.70783 * 353.46238 * 24 10 8 45 45 H 1.07997 * 125.57992 * 179.75598 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 2.3511 -3.1066 0.6595 7 6 1.8242 -4.3331 0.7046 8 6 2.4965 -5.5190 0.1477 9 8 2.0274 -6.6262 0.3310 10 7 3.6317 -5.3778 -0.5648 11 6 4.1253 -4.0428 -0.9297 12 6 5.5793 -3.9078 -0.4665 13 6 6.4032 -5.0616 -1.0427 14 6 5.8528 -6.3923 -0.5248 15 1 5.8903 -6.4022 0.5646 16 6 6.6847 -7.5259 -1.0670 17 1 7.5222 -7.3185 -1.7166 18 6 6.3766 -8.8278 -0.7337 19 7 5.3565 -9.0805 0.0568 20 14 7.4074 -10.2330 -1.4064 21 1 8.5241 -10.5199 -0.4705 22 1 6.5596 -11.4437 -1.5513 23 1 7.9579 -9.8527 -2.7321 24 6 4.4019 -6.5554 -0.9887 25 6 0.6133 -4.3831 1.3041 26 16 0.1847 -2.8088 1.8138 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 3.5148 -3.2820 -0.4433 37 1 4.0732 -3.9168 -2.0111 38 1 5.9862 -2.9594 -0.8171 39 1 5.6188 -3.9409 0.6223 40 1 6.3431 -5.0426 -2.1309 41 1 7.4433 -4.9544 -0.7346 42 1 5.1395 -9.9964 0.2910 43 1 4.3727 -6.6369 -2.0752 44 1 3.9747 -7.4539 -0.5432 45 1 0.0161 -5.2725 1.4407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:53 Heat of formation + Delta-G solvation = -20.334383 kcal Electronic energy + Delta-G solvation = -25605.179591 eV Core-core repulsion = 22134.249015 eV Total energy + Delta-G solvation = -3470.930577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85773 -40.02644 -38.40453 -37.22400 -35.28587 -33.48178 -32.14806 -31.56702 -28.76713 -27.94501 -27.68876 -26.67850 -25.05700 -23.41736 -22.53773 -21.26733 -20.60401 -20.35874 -19.26228 -18.39043 -17.35368 -17.09535 -16.54732 -16.49448 -16.02542 -15.88887 -15.56643 -15.19284 -14.97562 -14.64852 -14.45327 -14.36507 -14.23343 -13.80414 -13.55071 -13.45455 -13.05754 -12.94017 -12.89945 -12.77566 -12.57841 -12.31038 -12.24786 -12.05352 -11.94505 -11.73768 -11.69989 -11.49508 -11.30234 -11.02253 -10.99134 -10.61616 -10.56649 -9.97173 -9.87938 -9.39116 -8.14005 -6.31834 -0.51259 0.24292 0.55654 0.88246 1.38253 1.39733 1.50868 2.18413 2.30404 2.40447 2.89680 3.14237 3.66108 3.95895 4.01409 4.08445 4.16535 4.20756 4.23424 4.37530 4.43450 4.50805 4.59052 4.72729 4.78667 4.82947 4.84721 4.91014 5.00844 5.04440 5.09676 5.15367 5.17267 5.23980 5.33814 5.37656 5.41890 5.50557 5.53303 5.55849 5.71486 5.86003 5.93316 6.28635 6.37917 6.65412 6.80281 7.17414 7.38352 8.90072 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003367 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.966320 B = 8314.350995 C = 9309.158872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.041 4.041 5 C 0.022 3.978 6 N -0.453 5.453 7 C -0.003 4.003 8 C 0.566 3.434 9 O -0.589 6.589 10 N -0.589 5.589 11 C 0.053 3.947 12 C -0.115 4.115 13 C -0.106 4.106 14 C 0.042 3.958 15 H -0.015 1.015 16 C -0.537 4.537 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.918 5.918 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.261 1.261 24 C 0.125 3.875 25 C -0.247 4.247 26 S 0.308 5.692 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.261 0.739 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 25.139 3.002 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.081 4.081 5 C -0.256 4.256 6 N -0.169 5.169 7 C -0.137 4.137 8 C 0.352 3.648 9 O -0.470 6.470 10 N -0.319 5.319 11 C -0.069 4.069 12 C -0.153 4.153 13 C -0.144 4.144 14 C 0.022 3.978 15 H 0.003 0.997 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.185 1.185 24 C 0.003 3.997 25 C -0.390 4.390 26 S 0.567 5.433 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.187 0.813 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.638 24.976 3.453 28.203 hybrid contribution 1.178 -2.768 -0.799 3.113 sum -11.459 22.207 2.654 25.130 Atomic orbital electron populations 1.22043 0.94532 1.01698 1.03355 1.21088 0.96520 0.96930 0.96495 1.21789 1.01332 0.94023 1.02815 1.20659 1.03760 0.82762 1.00955 1.27987 0.96232 1.01780 0.99578 1.66370 1.32203 0.98529 1.19812 1.20148 0.95161 0.91774 1.06615 1.17881 0.80944 0.87344 0.78593 1.90755 1.66348 1.27603 1.62338 1.48355 1.22434 1.09607 1.51458 1.23389 0.97795 0.85168 1.00525 1.21768 0.94817 0.98903 0.99805 1.21555 0.98700 0.94544 0.99602 1.18873 0.91222 0.93663 0.94010 0.99717 1.21515 1.14006 0.91664 1.30346 0.91826 1.25962 0.96255 1.01868 0.95081 1.70092 1.28754 1.20379 1.36396 0.85481 0.78391 0.78190 0.79167 1.19867 1.21201 1.18549 1.21787 0.93686 0.87689 0.96577 1.26817 1.00266 1.07152 1.04746 1.82274 1.18292 0.92636 1.50091 0.93648 0.90518 0.91866 0.92148 0.92328 0.92138 0.91114 0.86515 0.88217 0.81281 0.92722 0.88363 0.93761 0.92793 0.92814 0.93039 0.94822 0.90487 0.79769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.89 71.98 0.64 -0.85 16 2 C -0.09 -0.98 2.91 -10.80 -0.03 -1.01 16 3 C -0.14 -1.10 9.19 71.98 0.66 -0.44 16 4 C -0.04 -0.48 5.26 29.85 0.16 -0.32 16 5 C 0.02 0.43 5.97 88.57 0.53 0.96 16 6 N -0.45 -12.94 6.72 -180.84 -1.22 -14.16 16 7 C 0.00 -0.11 6.52 40.56 0.26 0.16 16 8 C 0.57 26.65 7.65 86.62 0.66 27.31 16 9 O -0.59 -32.58 16.19 -4.15 -0.07 -32.65 16 10 N -0.59 -27.63 2.98 -822.85 -2.45 -30.09 16 11 C 0.05 1.95 6.27 86.36 0.54 2.49 16 12 C -0.11 -4.10 6.08 30.67 0.19 -3.92 16 13 C -0.11 -4.59 5.11 30.62 0.16 -4.43 16 14 C 0.04 2.27 2.25 -11.46 -0.03 2.24 16 15 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 16 C -0.54 -31.16 8.56 25.60 0.22 -30.94 16 17 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.01 0.44 5.30 84.66 0.45 0.89 16 19 N -0.92 -58.04 11.40 21.45 0.24 -57.80 16 20 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.12 6.87 5.38 86.36 0.46 7.34 16 25 C -0.25 -6.88 10.62 67.12 0.71 -6.17 16 26 S 0.31 5.03 21.37 -56.49 -1.21 3.83 16 27 H 0.04 0.52 6.13 -2.38 -0.01 0.51 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.17 5.55 3.55 -78.68 -0.28 5.27 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 4.94 5.19 -2.39 -0.01 4.93 16 45 H 0.18 5.11 8.04 -2.91 -0.02 5.08 16 Total: -1.00 -78.27 366.58 3.62 -74.65 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.71 Total: 15.05 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.59 Total: -6.68 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.42 Total: -102.04 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.07 Total: -32.65 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.21 Total: 3.83 kcal Total: -78.27 3.62 -74.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.315 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds