Wall clock time and date at job start Tue Mar 31 2020 13:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46868 * 2 1 4 4 C 1.50698 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80685 * 90.02897 * 4 3 2 6 6 C 1.30942 * 117.36494 * 179.68853 * 5 4 3 7 7 C 1.50701 * 122.90550 * 180.32770 * 6 5 4 8 8 C 1.35664 * 114.18939 * 0.52099 * 6 5 4 9 9 C 1.46683 * 126.12577 * 179.78946 * 8 6 5 10 10 O 1.21688 * 120.00506 * 41.35737 * 9 8 6 11 11 N 1.34774 * 119.99572 * 221.07411 * 9 8 6 12 12 C 1.46924 * 120.63128 * 5.76824 * 11 9 8 13 13 C 1.53623 * 108.54370 * 126.36783 * 12 11 9 14 14 C 1.53040 * 109.24739 * 54.85277 * 13 12 11 15 15 C 1.53036 * 109.53471 * 298.51362 * 14 13 12 16 16 H 1.08996 * 109.50051 * 301.40995 * 15 14 13 17 17 C 1.50700 * 109.52235 * 181.32951 * 15 14 13 18 18 H 1.08000 * 120.00048 * 0.14655 * 17 15 14 19 19 C 1.37881 * 120.00091 * 180.14447 * 17 15 14 20 20 N 1.31512 * 119.99755 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00070 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47404 * 89.99702 * 21 19 17 23 23 H 1.48502 * 109.47496 * 210.00260 * 21 19 17 24 24 H 1.48509 * 109.47193 * 329.99989 * 21 19 17 25 25 C 1.46926 * 120.62887 * 186.04148 * 11 9 8 26 26 S 1.70955 * 124.80595 * 269.99889 * 4 3 2 27 27 H 1.08997 * 109.47598 * 59.99702 * 1 2 3 28 28 H 1.09010 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47467 * 299.99513 * 1 2 3 30 30 H 1.08997 * 109.46962 * 240.00320 * 2 1 3 31 31 H 1.09004 * 109.47325 * 119.99987 * 2 1 3 32 32 H 1.09001 * 109.47514 * 60.00190 * 3 2 1 33 33 H 1.09004 * 109.47138 * 300.00102 * 3 2 1 34 34 H 1.09005 * 109.47194 * 270.21091 * 7 6 5 35 35 H 1.09002 * 109.46843 * 30.20590 * 7 6 5 36 36 H 1.08994 * 109.47312 * 150.20776 * 7 6 5 37 37 H 1.09006 * 109.58360 * 246.19834 * 12 11 9 38 38 H 1.09001 * 109.58487 * 6.62033 * 12 11 9 39 39 H 1.09000 * 109.63057 * 294.86031 * 13 12 11 40 40 H 1.08996 * 109.43069 * 174.72664 * 13 12 11 41 41 H 1.08997 * 109.45799 * 178.49290 * 14 13 12 42 42 H 1.09002 * 109.45634 * 58.53250 * 14 13 12 43 43 H 0.97004 * 119.99572 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58923 * 353.37477 * 25 11 9 45 45 H 1.09002 * 109.59058 * 113.66292 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2852 1.4433 -1.0637 6 6 5.5837 1.4495 -0.8946 7 6 6.5588 1.4583 -2.0436 8 6 5.9752 1.4432 0.4043 9 6 7.3592 1.4435 0.8903 10 8 8.1939 2.1446 0.3496 11 7 7.7049 0.6715 1.9396 12 6 6.7409 -0.2687 2.5271 13 6 7.3802 -1.6651 2.5633 14 6 8.7161 -1.5892 3.3061 15 6 9.6629 -0.6455 2.5612 16 1 9.8106 -1.0069 1.5435 17 6 10.9893 -0.5962 3.2748 18 1 11.1433 -1.1815 4.1693 19 6 12.0063 0.1961 2.7858 20 7 11.8190 0.9084 1.6962 21 14 13.6507 0.2566 3.6700 22 1 14.5447 -0.7966 3.1253 23 1 14.2738 1.5890 3.4660 24 1 13.4408 0.0254 5.1219 25 6 9.0513 0.7585 2.5214 26 16 4.5233 1.4424 1.4026 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6765 1.9563 -0.8900 34 1 6.7965 0.4327 -2.3264 35 1 6.1141 1.9758 -2.8936 36 1 7.4712 1.9727 -1.7419 37 1 6.4918 0.0485 3.5398 38 1 5.8376 -0.2945 1.9175 39 1 7.5493 -2.0170 1.5456 40 1 6.7146 -2.3554 3.0814 41 1 9.1602 -2.5833 3.3572 42 1 8.5493 -1.2138 4.3158 43 1 12.5343 1.4660 1.3524 44 1 9.6730 1.4107 1.9081 45 1 8.9871 1.1601 3.5328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:37 Heat of formation + Delta-G solvation = -13.392073 kcal Electronic energy + Delta-G solvation = -25396.070319 eV Core-core repulsion = 21925.440784 eV Total energy + Delta-G solvation = -3470.629535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25281 -39.08511 -36.72216 -35.49577 -33.45195 -31.88657 -31.71642 -29.90748 -28.36550 -28.13482 -25.12247 -24.56696 -23.42758 -21.94892 -21.57194 -21.12289 -19.33164 -18.10063 -17.90580 -16.68476 -16.11879 -15.66897 -15.32360 -15.02531 -14.64360 -14.47533 -14.12472 -13.82998 -13.70792 -13.48007 -13.33751 -12.83827 -12.67343 -12.46570 -12.42186 -12.29456 -12.11858 -11.93488 -11.83949 -11.50577 -11.29151 -11.07909 -11.04830 -10.98077 -10.53598 -10.50627 -10.26992 -9.94330 -9.81320 -9.43819 -9.25007 -9.11095 -8.94770 -8.61934 -8.45668 -7.82485 -6.01644 -4.10721 0.39620 1.17610 1.60548 2.60376 3.28836 3.36918 3.38794 3.39730 3.69389 3.90245 4.41238 4.59564 4.66943 4.73384 4.91626 5.16634 5.19059 5.22845 5.26877 5.29156 5.37524 5.43910 5.44283 5.61886 5.69847 5.77956 5.79585 5.90585 5.93202 5.94246 5.98314 6.12855 6.26481 6.45048 6.55928 6.61783 6.80586 6.93596 7.07941 7.19696 7.58826 7.67716 7.83188 7.95536 8.14694 8.35126 8.70778 8.93406 9.55082 11.03598 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.003304 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.370530 B = 8472.753880 C = 9199.567616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.043 4.043 4 C 0.042 3.958 5 N -0.472 5.472 6 C 0.129 3.871 7 C -0.091 4.091 8 C -0.275 4.275 9 C 0.584 3.416 10 O -0.516 6.516 11 N -0.596 5.596 12 C 0.099 3.901 13 C -0.130 4.130 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.030 0.970 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 S 0.165 5.835 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.125 0.875 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.247 -1.100 -1.597 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.234 4.234 5 N -0.187 5.187 6 C -0.007 4.007 7 C -0.150 4.150 8 C -0.399 4.399 9 C 0.368 3.632 10 O -0.394 6.394 11 N -0.328 5.328 12 C -0.025 4.025 13 C -0.169 4.169 14 C -0.148 4.148 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.006 4.006 26 S 0.423 5.577 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.143 0.857 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.176 -0.573 -1.393 21.230 hybrid contribution 1.405 0.006 -0.172 1.416 sum -19.771 -0.567 -1.565 19.841 Atomic orbital electron populations 1.21761 0.94934 1.02095 1.02042 1.21542 0.96216 0.94979 1.03095 1.20346 0.84775 0.98914 1.04344 1.27346 1.01546 1.02619 0.91875 1.66022 1.04412 1.16800 1.31456 1.20525 0.89787 0.96849 0.93588 1.20601 0.97225 1.03439 0.93778 1.25718 0.98732 1.18420 0.97033 1.16786 0.84631 0.81067 0.80691 1.90829 1.49872 1.42132 1.56543 1.48430 1.15824 1.37743 1.30839 1.21992 0.91725 0.90462 0.98326 1.21994 0.98498 0.94972 1.01414 1.21635 0.93916 1.00606 0.98678 1.18962 0.92572 0.89890 0.96426 0.95199 1.21064 0.96312 1.27209 1.11409 0.92313 1.25060 0.98744 0.95370 0.94867 1.69883 1.33025 1.27740 1.21048 0.86590 0.84004 0.77381 0.80005 1.20667 1.21168 1.19916 1.22383 0.78173 1.02910 0.97173 1.83924 0.96025 1.66436 1.11343 0.92440 0.92305 0.92494 0.91127 0.91523 0.89569 0.88726 0.90488 0.90605 0.88290 0.91619 0.91144 0.92091 0.92068 0.92852 0.93090 0.92597 0.85716 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 3 C -0.04 -0.36 5.79 -27.89 -0.16 -0.52 16 4 C 0.04 0.51 6.64 -13.29 -0.09 0.42 16 5 N -0.47 -6.97 10.50 -7.70 -0.08 -7.05 16 6 C 0.13 2.10 6.79 -83.89 -0.57 1.53 16 7 C -0.09 -1.40 10.08 36.01 0.36 -1.04 16 8 C -0.28 -4.72 5.37 -37.09 -0.20 -4.91 16 9 C 0.58 12.20 7.31 -12.85 -0.09 12.10 16 10 O -0.52 -12.65 14.65 5.20 0.08 -12.58 16 11 N -0.60 -12.17 2.97 -174.04 -0.52 -12.69 16 12 C 0.10 1.61 5.70 -3.49 -0.02 1.59 16 13 C -0.13 -2.14 6.10 -26.39 -0.16 -2.30 16 14 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -13.96 8.57 -34.44 -0.29 -14.26 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.88 -25.43 11.39 55.43 0.63 -24.80 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.11 2.72 5.41 -3.71 -0.02 2.70 16 26 S 0.17 2.11 20.28 -107.50 -2.18 -0.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.74 6.19 -51.93 -0.32 1.42 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.02 4.59 -39.70 -0.18 0.84 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.12 3.49 5.11 -51.93 -0.27 3.23 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -31.09 369.09 -10.08 -41.17 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.07 Total: 0.47 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.47 Total: -6.10 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.03 Total: -44.53 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.18 Total: -0.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.09 -10.08 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.773 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds