Wall clock time and date at job start Tue Mar 31 2020 13:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46868 * 2 1 4 4 C 1.50698 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80685 * 90.02897 * 4 3 2 6 6 C 1.30942 * 117.36494 * 179.68853 * 5 4 3 7 7 C 1.50701 * 122.90550 * 180.32770 * 6 5 4 8 8 C 1.35664 * 114.18939 * 0.52099 * 6 5 4 9 9 C 1.46683 * 126.12577 * 179.78946 * 8 6 5 10 10 O 1.21688 * 120.00506 * 41.35737 * 9 8 6 11 11 N 1.34774 * 119.99572 * 221.07411 * 9 8 6 12 12 C 1.46924 * 120.63128 * 5.76824 * 11 9 8 13 13 C 1.53623 * 108.54370 * 126.36783 * 12 11 9 14 14 C 1.53040 * 109.24739 * 54.85277 * 13 12 11 15 15 C 1.53036 * 109.53471 * 298.51362 * 14 13 12 16 16 H 1.08996 * 109.50051 * 301.40995 * 15 14 13 17 17 C 1.50700 * 109.52235 * 181.32951 * 15 14 13 18 18 H 1.08000 * 120.00048 * 0.14655 * 17 15 14 19 19 C 1.37881 * 120.00091 * 180.14447 * 17 15 14 20 20 N 1.31512 * 119.99755 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00070 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47404 * 89.99702 * 21 19 17 23 23 H 1.48502 * 109.47496 * 210.00260 * 21 19 17 24 24 H 1.48509 * 109.47193 * 329.99989 * 21 19 17 25 25 C 1.46926 * 120.62887 * 186.04148 * 11 9 8 26 26 S 1.70955 * 124.80595 * 269.99889 * 4 3 2 27 27 H 1.08997 * 109.47598 * 59.99702 * 1 2 3 28 28 H 1.09010 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47467 * 299.99513 * 1 2 3 30 30 H 1.08997 * 109.46962 * 240.00320 * 2 1 3 31 31 H 1.09004 * 109.47325 * 119.99987 * 2 1 3 32 32 H 1.09001 * 109.47514 * 60.00190 * 3 2 1 33 33 H 1.09004 * 109.47138 * 300.00102 * 3 2 1 34 34 H 1.09005 * 109.47194 * 270.21091 * 7 6 5 35 35 H 1.09002 * 109.46843 * 30.20590 * 7 6 5 36 36 H 1.08994 * 109.47312 * 150.20776 * 7 6 5 37 37 H 1.09006 * 109.58360 * 246.19834 * 12 11 9 38 38 H 1.09001 * 109.58487 * 6.62033 * 12 11 9 39 39 H 1.09000 * 109.63057 * 294.86031 * 13 12 11 40 40 H 1.08996 * 109.43069 * 174.72664 * 13 12 11 41 41 H 1.08997 * 109.45799 * 178.49290 * 14 13 12 42 42 H 1.09002 * 109.45634 * 58.53250 * 14 13 12 43 43 H 0.97004 * 119.99572 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58923 * 353.37477 * 25 11 9 45 45 H 1.09002 * 109.59058 * 113.66292 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2852 1.4433 -1.0637 6 6 5.5837 1.4495 -0.8946 7 6 6.5588 1.4583 -2.0436 8 6 5.9752 1.4432 0.4043 9 6 7.3592 1.4435 0.8903 10 8 8.1939 2.1446 0.3496 11 7 7.7049 0.6715 1.9396 12 6 6.7409 -0.2687 2.5271 13 6 7.3802 -1.6651 2.5633 14 6 8.7161 -1.5892 3.3061 15 6 9.6629 -0.6455 2.5612 16 1 9.8106 -1.0069 1.5435 17 6 10.9893 -0.5962 3.2748 18 1 11.1433 -1.1815 4.1693 19 6 12.0063 0.1961 2.7858 20 7 11.8190 0.9084 1.6962 21 14 13.6507 0.2566 3.6700 22 1 14.5447 -0.7966 3.1253 23 1 14.2738 1.5890 3.4660 24 1 13.4408 0.0254 5.1219 25 6 9.0513 0.7585 2.5214 26 16 4.5233 1.4424 1.4026 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6765 1.9563 -0.8900 34 1 6.7965 0.4327 -2.3264 35 1 6.1141 1.9758 -2.8936 36 1 7.4712 1.9727 -1.7419 37 1 6.4918 0.0485 3.5398 38 1 5.8376 -0.2945 1.9175 39 1 7.5493 -2.0170 1.5456 40 1 6.7146 -2.3554 3.0814 41 1 9.1602 -2.5833 3.3572 42 1 8.5493 -1.2138 4.3158 43 1 12.5343 1.4660 1.3524 44 1 9.6730 1.4107 1.9081 45 1 8.9871 1.1601 3.5328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:36 Heat of formation + Delta-G solvation = -31.664214 kcal Electronic energy + Delta-G solvation = -25396.862659 eV Core-core repulsion = 21925.440784 eV Total energy + Delta-G solvation = -3471.421875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57123 -40.52553 -38.37159 -36.21359 -35.35660 -33.57366 -32.81725 -31.64058 -29.60164 -29.05840 -27.04497 -26.13498 -24.29823 -23.59670 -22.61937 -22.20228 -20.93379 -19.51765 -19.11131 -18.44251 -17.78368 -17.09846 -16.61630 -16.28145 -15.95683 -15.76412 -15.42040 -15.29051 -14.96147 -14.70288 -14.53241 -14.35092 -14.27251 -13.94586 -13.59057 -13.50701 -13.35631 -12.96869 -12.89691 -12.79336 -12.54160 -12.47359 -12.31514 -12.27618 -12.07736 -11.96021 -11.68627 -11.59701 -11.25817 -11.01318 -10.92905 -10.71778 -10.54094 -10.33135 -9.75194 -9.50317 -8.11538 -6.28909 -0.75981 0.04952 0.48875 1.38476 1.40601 1.41444 1.52114 1.86520 2.16031 2.41789 2.91087 3.16564 3.52857 3.76375 3.91464 4.01033 4.07457 4.10141 4.12567 4.26936 4.46017 4.50283 4.56904 4.65521 4.67296 4.70119 4.72688 4.78001 4.82777 4.84432 4.97517 5.03999 5.17964 5.19545 5.22234 5.27293 5.30648 5.32786 5.48520 5.48876 5.58698 5.86292 5.96335 6.30280 6.45324 6.57920 6.83649 7.10938 7.41457 8.91930 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.003304 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.370530 B = 8472.753880 C = 9199.567616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.045 4.045 4 C 0.060 3.940 5 N -0.493 5.493 6 C 0.132 3.868 7 C -0.091 4.091 8 C -0.323 4.323 9 C 0.580 3.420 10 O -0.570 6.570 11 N -0.601 5.601 12 C 0.095 3.905 13 C -0.124 4.124 14 C -0.104 4.104 15 C 0.039 3.961 16 H -0.015 1.015 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.009 3.991 20 N -0.915 5.915 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.126 3.874 26 S 0.226 5.774 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.683 -2.148 0.182 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.215 4.215 5 N -0.208 5.208 6 C -0.005 4.005 7 C -0.150 4.150 8 C -0.446 4.446 9 C 0.367 3.633 10 O -0.451 6.451 11 N -0.332 5.332 12 C -0.028 4.028 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.003 0.997 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.190 4.190 20 N -0.554 5.554 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.185 1.185 25 C 0.005 3.995 26 S 0.485 5.515 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.653 -1.658 0.426 24.712 hybrid contribution 2.341 0.320 -0.754 2.480 sum -22.312 -1.339 -0.328 22.355 Atomic orbital electron populations 1.21740 0.93374 1.02619 1.02791 1.21533 0.97492 0.93924 1.02645 1.20653 0.81684 1.00083 1.06166 1.28188 1.03185 0.98905 0.91234 1.66119 1.03514 1.18681 1.32453 1.20644 0.90711 0.95749 0.93440 1.20545 0.96265 1.03621 0.94547 1.25334 0.98460 1.22214 0.98618 1.17272 0.85957 0.80049 0.80023 1.90787 1.52063 1.44182 1.58113 1.48417 1.15210 1.38563 1.30969 1.22322 0.91351 0.89338 0.99740 1.21968 0.97458 0.96029 1.00720 1.21519 0.94603 0.99208 0.98868 1.18895 0.93474 0.91244 0.94402 0.99690 1.21499 0.97560 1.26733 1.11492 0.91736 1.25909 1.02489 0.95103 0.95518 1.70091 1.33804 1.28662 1.22808 0.85555 0.79588 0.77109 0.79418 1.20200 1.21425 1.18469 1.21822 0.79881 1.01675 0.96149 1.83557 0.92735 1.65510 1.09732 0.92175 0.91960 0.91300 0.92550 0.91108 0.86759 0.87895 0.89927 0.88655 0.91272 0.89139 0.89005 0.93517 0.87362 0.92611 0.91906 0.93122 0.90215 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 3 C -0.05 -0.57 5.79 29.85 0.17 -0.40 16 4 C 0.06 1.29 6.64 88.46 0.59 1.87 16 5 N -0.49 -13.75 10.50 -178.28 -1.87 -15.62 16 6 C 0.13 4.32 6.79 42.09 0.29 4.60 16 7 C -0.09 -2.91 10.08 71.24 0.72 -2.19 16 8 C -0.32 -11.05 5.37 23.88 0.13 -10.92 16 9 C 0.58 25.35 7.31 86.45 0.63 25.98 16 10 O -0.57 -30.25 14.65 -4.31 -0.06 -30.32 16 11 N -0.60 -25.08 2.97 -822.75 -2.44 -27.52 16 12 C 0.09 2.89 5.70 86.51 0.49 3.38 16 13 C -0.12 -3.77 6.10 30.82 0.19 -3.59 16 14 C -0.10 -4.00 5.11 30.62 0.16 -3.84 16 15 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 16 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 17 C -0.53 -29.32 8.57 25.60 0.22 -29.10 16 18 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 19 C 0.01 0.52 5.30 84.66 0.45 0.97 16 20 N -0.92 -55.92 11.39 21.45 0.24 -55.68 16 21 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 C 0.13 6.36 5.41 86.36 0.47 6.83 16 26 S 0.23 5.15 20.28 -56.49 -1.15 4.01 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 29 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 2.65 6.19 -2.39 -0.01 2.64 16 37 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.09 2.41 4.59 -10.16 -0.05 2.36 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.08 4.80 5.11 -2.39 -0.01 4.79 16 45 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.63 369.09 3.06 -70.57 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.94 Total: 14.25 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 5.37 Total: -5.99 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -4.07 Total: -98.82 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.06 Total: -30.32 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.15 Total: 4.01 kcal Total: -73.63 3.06 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.908 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds