Wall clock time and date at job start Tue Mar 31 2020 13:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.53001 * 109.46746 * 240.00167 * 2 1 3 5 5 C 1.50703 * 109.47431 * 120.00307 * 2 1 3 6 6 N 1.28648 * 124.71921 * 60.24611 * 5 2 1 7 7 C 1.33557 * 115.76244 * 180.22654 * 6 5 2 8 8 C 1.47267 * 123.13941 * 179.83351 * 7 6 5 9 9 O 1.21637 * 120.00114 * 171.60946 * 8 7 6 10 10 N 1.34770 * 120.00078 * 351.60839 * 8 7 6 11 11 C 1.46932 * 120.63199 * 353.22466 * 10 8 7 12 12 C 1.53195 * 108.89231 * 126.34084 * 11 10 8 13 13 C 1.53358 * 109.14861 * 54.58253 * 12 11 10 14 14 C 1.53039 * 109.60373 * 298.71208 * 13 12 11 15 15 H 1.09001 * 109.49706 * 301.41895 * 14 13 12 16 16 C 1.50707 * 109.49602 * 181.32435 * 14 13 12 17 17 H 1.07997 * 119.99746 * 0.16378 * 16 14 13 18 18 C 1.37874 * 119.99901 * 180.15988 * 16 14 13 19 19 N 1.31516 * 120.00525 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99749 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47134 * 60.00147 * 20 18 16 22 22 H 1.48498 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47435 * 300.00153 * 20 18 16 24 24 C 1.46925 * 120.63361 * 173.24973 * 10 8 7 25 25 C 1.35209 * 113.71874 * 359.56237 * 7 6 5 26 26 S 1.70767 * 124.71959 * 240.02625 * 5 2 1 27 27 H 1.09001 * 109.46963 * 299.99784 * 1 2 3 28 28 H 1.08990 * 109.47769 * 59.99864 * 1 2 3 29 29 H 1.09007 * 109.47093 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46555 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47467 * 299.99977 * 3 2 1 32 32 H 1.09001 * 109.47189 * 60.00354 * 3 2 1 33 33 H 1.08996 * 109.47597 * 299.99711 * 4 2 1 34 34 H 1.09002 * 109.47292 * 60.00159 * 4 2 1 35 35 H 1.08999 * 109.47079 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.58910 * 246.20188 * 11 10 8 37 37 H 1.08997 * 109.58086 * 6.48793 * 11 10 8 38 38 H 1.08994 * 109.49565 * 174.65967 * 12 11 10 39 39 H 1.09000 * 109.49857 * 294.75870 * 12 11 10 40 40 H 1.08992 * 109.41737 * 178.67460 * 13 12 11 41 41 H 1.08992 * 109.41959 * 58.74796 * 13 12 11 42 42 H 0.96996 * 120.00145 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58642 * 353.36984 * 24 10 8 44 44 H 1.09003 * 109.59033 * 113.80028 * 24 10 8 45 45 H 1.07998 * 125.58441 * 180.22817 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7820 -1.9384 1.5211 7 6 2.3152 -2.3855 2.6611 8 6 2.1295 -3.7616 3.1515 9 8 2.7614 -4.1550 4.1135 10 7 1.2594 -4.5852 2.5343 11 6 0.3820 -4.0841 1.4675 12 6 0.5590 -4.9635 0.2257 13 6 0.3151 -6.4285 0.6078 14 6 1.3384 -6.8620 1.6599 15 1 2.3453 -6.7328 1.2630 16 6 1.1171 -8.3111 2.0098 17 1 0.3274 -8.8683 1.5279 18 6 1.9228 -8.9253 2.9449 19 7 2.8848 -8.2469 3.5313 20 14 1.6489 -10.7216 3.3780 21 1 1.8133 -11.5551 2.1599 22 1 2.6399 -11.1408 4.4014 23 1 0.2761 -10.8973 3.9164 24 6 1.1695 -6.0012 2.9159 25 6 3.0462 -1.4583 3.3200 26 16 3.0178 0.0009 2.4301 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 -0.6556 -4.1241 1.7988 37 1 0.6497 -3.0551 1.2277 38 1 -0.1550 -4.6599 -0.5398 39 1 1.5733 -4.8519 -0.1576 40 1 0.4168 -7.0557 -0.2778 41 1 -0.6907 -6.5344 1.0142 42 1 3.4514 -8.6789 4.1894 43 1 1.9584 -6.2381 3.6299 44 1 0.1960 -6.1976 3.3652 45 1 3.5632 -1.6141 4.2553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:10 Heat of formation + Delta-G solvation = 2.732077 kcal Electronic energy + Delta-G solvation = -26004.587414 eV Core-core repulsion = 22534.657074 eV Total energy + Delta-G solvation = -3469.930340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60667 -38.68362 -36.93149 -36.37250 -33.24945 -31.62329 -30.08330 -29.67937 -27.73722 -27.48822 -26.34154 -24.81977 -24.47378 -22.10902 -21.63985 -19.58820 -19.53189 -18.60228 -17.70278 -16.39803 -16.05222 -15.59001 -15.30098 -14.87163 -14.41234 -14.36231 -14.32666 -13.69291 -13.59130 -13.51951 -13.19737 -12.67815 -12.59523 -12.51798 -12.42751 -12.05377 -11.94145 -11.87063 -11.72518 -11.66596 -11.29805 -11.23210 -10.92252 -10.86789 -10.50336 -10.36948 -10.16521 -9.83879 -9.66204 -9.47795 -9.17556 -9.02003 -8.87146 -8.57801 -8.36620 -7.61306 -5.95048 -4.03663 0.57924 1.20225 1.61528 2.15863 3.34885 3.40454 3.42072 3.63763 3.87286 3.97349 4.45982 4.47099 4.60206 4.70687 5.03431 5.21729 5.24842 5.33659 5.35020 5.37440 5.48906 5.56444 5.61098 5.65489 5.69553 5.78802 5.80301 5.86475 6.03517 6.06338 6.10473 6.32509 6.46413 6.66586 6.79876 6.85995 6.99479 7.07982 7.23844 7.42580 7.50001 7.69790 7.94069 8.05789 8.35645 8.44359 8.88058 9.00955 9.61484 11.10319 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003602 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.139192 B = 7771.771063 C = 8671.368761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.012 3.988 3 C -0.154 4.154 4 C -0.137 4.137 5 C 0.030 3.970 6 N -0.426 5.426 7 C 0.028 3.972 8 C 0.577 3.423 9 O -0.536 6.536 10 N -0.582 5.582 11 C 0.058 3.942 12 C -0.125 4.125 13 C -0.112 4.112 14 C 0.042 3.958 15 H 0.027 0.973 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 C -0.235 4.235 26 S 0.194 5.806 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.147 0.853 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.121 0.879 44 H 0.042 0.958 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 22.637 -7.604 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 C -0.212 4.212 4 C -0.195 4.195 5 C -0.248 4.248 6 N -0.141 5.141 7 C -0.106 4.106 8 C 0.360 3.640 9 O -0.414 6.414 10 N -0.312 5.312 11 C -0.066 4.066 12 C -0.163 4.163 13 C -0.150 4.150 14 C 0.023 3.977 15 H 0.046 0.954 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.008 4.008 25 C -0.377 4.377 26 S 0.452 5.548 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.163 0.837 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.060 0.940 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.010 23.028 -7.124 24.188 hybrid contribution -0.282 -2.168 0.661 2.284 sum -2.292 20.860 -6.463 21.958 Atomic orbital electron populations 1.21870 0.92160 1.03404 1.02101 1.19227 0.96674 0.93846 0.89418 1.22033 1.01717 0.94299 1.03174 1.21869 1.01282 1.01377 0.95008 1.27493 1.01493 0.94115 1.01729 1.66594 1.21287 1.10982 1.15249 1.20848 1.00235 0.97631 0.91875 1.17152 0.80892 0.82600 0.83338 1.90812 1.48369 1.75263 1.26983 1.48301 1.36052 1.11411 1.35421 1.23004 0.92965 1.03325 0.87295 1.21880 1.00895 0.96925 0.96597 1.21706 1.00092 0.93516 0.99660 1.18946 0.94478 0.93898 0.90404 0.95443 1.21064 1.16506 0.94911 1.23399 0.92415 1.25057 0.94926 0.98011 0.96041 1.69879 1.18749 1.36218 1.27087 0.86646 0.77917 0.85252 0.78108 1.20300 1.21270 1.20253 1.22337 1.02289 0.74686 1.01506 1.26587 1.06384 0.97340 1.07372 1.82638 1.45629 1.12652 1.13862 0.92453 0.91542 0.91177 0.91776 0.90639 0.91807 0.91054 0.91613 0.92428 0.93612 0.83710 0.92691 0.92550 0.93340 0.93428 0.92636 0.86136 0.93953 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.45 37.16 0.31 -0.75 16 2 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 3 C -0.15 -0.92 7.53 37.16 0.28 -0.64 16 4 C -0.14 -1.15 8.44 37.16 0.31 -0.84 16 5 C 0.03 0.35 5.74 -13.61 -0.08 0.27 16 6 N -0.43 -6.33 6.71 -8.51 -0.06 -6.39 16 7 C 0.03 0.48 6.51 -84.53 -0.55 -0.07 16 8 C 0.58 12.81 7.65 -12.59 -0.10 12.72 16 9 O -0.54 -13.76 16.18 5.24 0.08 -13.67 16 10 N -0.58 -12.97 2.97 -174.09 -0.52 -13.48 16 11 C 0.06 1.06 6.26 -3.71 -0.02 1.04 16 12 C -0.12 -2.27 6.11 -26.44 -0.16 -2.43 16 13 C -0.11 -2.40 5.11 -26.53 -0.14 -2.54 16 14 C 0.04 1.09 2.25 -91.65 -0.21 0.88 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.60 8.56 -34.44 -0.29 -14.89 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -26.40 11.39 55.43 0.63 -25.77 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.11 2.89 5.38 -3.71 -0.02 2.87 16 25 C -0.24 -3.37 10.62 29.65 0.32 -3.06 16 26 S 0.19 1.95 21.28 -107.50 -2.29 -0.34 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.37 7.91 -51.93 -0.41 -0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.15 2.42 3.56 -89.68 -0.32 2.10 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.12 3.57 5.17 -51.93 -0.27 3.30 16 44 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.19 2.56 8.04 -52.49 -0.42 2.14 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -32.71 366.96 -9.52 -42.23 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.29 Total: 0.95 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.59 Total: -5.81 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.06 Total: -45.64 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.29 Total: -0.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.71 -9.52 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.963 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds