Wall clock time and date at job start Tue Mar 31 2020 13:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.53001 * 109.46746 * 240.00167 * 2 1 3 5 5 C 1.50703 * 109.47431 * 120.00307 * 2 1 3 6 6 N 1.28648 * 124.71921 * 60.24611 * 5 2 1 7 7 C 1.33557 * 115.76244 * 180.22654 * 6 5 2 8 8 C 1.47267 * 123.13941 * 179.83351 * 7 6 5 9 9 O 1.21637 * 120.00114 * 171.60946 * 8 7 6 10 10 N 1.34770 * 120.00078 * 351.60839 * 8 7 6 11 11 C 1.46932 * 120.63199 * 353.22466 * 10 8 7 12 12 C 1.53195 * 108.89231 * 126.34084 * 11 10 8 13 13 C 1.53358 * 109.14861 * 54.58253 * 12 11 10 14 14 C 1.53039 * 109.60373 * 298.71208 * 13 12 11 15 15 H 1.09001 * 109.49706 * 301.41895 * 14 13 12 16 16 C 1.50707 * 109.49602 * 181.32435 * 14 13 12 17 17 H 1.07997 * 119.99746 * 0.16378 * 16 14 13 18 18 C 1.37874 * 119.99901 * 180.15988 * 16 14 13 19 19 N 1.31516 * 120.00525 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99749 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47134 * 60.00147 * 20 18 16 22 22 H 1.48498 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47435 * 300.00153 * 20 18 16 24 24 C 1.46925 * 120.63361 * 173.24973 * 10 8 7 25 25 C 1.35209 * 113.71874 * 359.56237 * 7 6 5 26 26 S 1.70767 * 124.71959 * 240.02625 * 5 2 1 27 27 H 1.09001 * 109.46963 * 299.99784 * 1 2 3 28 28 H 1.08990 * 109.47769 * 59.99864 * 1 2 3 29 29 H 1.09007 * 109.47093 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46555 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47467 * 299.99977 * 3 2 1 32 32 H 1.09001 * 109.47189 * 60.00354 * 3 2 1 33 33 H 1.08996 * 109.47597 * 299.99711 * 4 2 1 34 34 H 1.09002 * 109.47292 * 60.00159 * 4 2 1 35 35 H 1.08999 * 109.47079 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.58910 * 246.20188 * 11 10 8 37 37 H 1.08997 * 109.58086 * 6.48793 * 11 10 8 38 38 H 1.08994 * 109.49565 * 174.65967 * 12 11 10 39 39 H 1.09000 * 109.49857 * 294.75870 * 12 11 10 40 40 H 1.08992 * 109.41737 * 178.67460 * 13 12 11 41 41 H 1.08992 * 109.41959 * 58.74796 * 13 12 11 42 42 H 0.96996 * 120.00145 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58642 * 353.36984 * 24 10 8 44 44 H 1.09003 * 109.59033 * 113.80028 * 24 10 8 45 45 H 1.07998 * 125.58441 * 180.22817 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7820 -1.9384 1.5211 7 6 2.3152 -2.3855 2.6611 8 6 2.1295 -3.7616 3.1515 9 8 2.7614 -4.1550 4.1135 10 7 1.2594 -4.5852 2.5343 11 6 0.3820 -4.0841 1.4675 12 6 0.5590 -4.9635 0.2257 13 6 0.3151 -6.4285 0.6078 14 6 1.3384 -6.8620 1.6599 15 1 2.3453 -6.7328 1.2630 16 6 1.1171 -8.3111 2.0098 17 1 0.3274 -8.8683 1.5279 18 6 1.9228 -8.9253 2.9449 19 7 2.8848 -8.2469 3.5313 20 14 1.6489 -10.7216 3.3780 21 1 1.8133 -11.5551 2.1599 22 1 2.6399 -11.1408 4.4014 23 1 0.2761 -10.8973 3.9164 24 6 1.1695 -6.0012 2.9159 25 6 3.0462 -1.4583 3.3200 26 16 3.0178 0.0009 2.4301 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 -0.6556 -4.1241 1.7988 37 1 0.6497 -3.0551 1.2277 38 1 -0.1550 -4.6599 -0.5398 39 1 1.5733 -4.8519 -0.1576 40 1 0.4168 -7.0557 -0.2778 41 1 -0.6907 -6.5344 1.0142 42 1 3.4514 -8.6789 4.1894 43 1 1.9584 -6.2381 3.6299 44 1 0.1960 -6.1976 3.3652 45 1 3.5632 -1.6141 4.2553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:09 Heat of formation + Delta-G solvation = -17.129196 kcal Electronic energy + Delta-G solvation = -26005.448663 eV Core-core repulsion = 22534.657074 eV Total energy + Delta-G solvation = -3470.791589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89892 -40.13824 -38.44232 -37.45808 -35.28416 -33.46253 -31.62107 -31.16084 -28.24372 -28.08394 -27.89633 -26.69826 -25.88339 -23.51471 -23.36004 -21.19840 -20.51379 -19.91471 -19.15423 -18.38321 -17.33652 -17.08332 -16.59729 -16.49470 -16.11253 -15.57612 -15.24285 -15.13428 -14.95547 -14.68877 -14.45152 -14.42968 -14.22023 -13.81165 -13.54672 -13.16082 -13.00118 -12.88493 -12.86508 -12.71648 -12.50546 -12.48131 -12.30646 -12.23984 -11.98362 -11.90756 -11.74304 -11.67664 -11.29246 -11.00602 -10.99011 -10.64366 -10.56442 -9.98631 -9.91809 -9.40111 -8.13749 -6.31907 -0.50378 0.24885 0.57752 0.89376 1.38435 1.41138 1.49411 2.18168 2.30235 2.40475 2.84092 3.14200 3.57681 3.91466 4.02454 4.03680 4.16941 4.20168 4.22931 4.34592 4.42562 4.54385 4.59979 4.76998 4.81267 4.82452 4.84924 4.94992 5.03401 5.06785 5.07068 5.10500 5.16533 5.23204 5.33370 5.33421 5.41339 5.46714 5.49297 5.53428 5.71255 5.85757 5.93296 6.28377 6.38056 6.65212 6.79957 7.17476 7.38323 8.90027 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003602 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.139192 B = 7771.771063 C = 8671.368761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 C -0.155 4.155 4 C -0.137 4.137 5 C 0.023 3.977 6 N -0.448 5.448 7 C -0.003 4.003 8 C 0.566 3.434 9 O -0.589 6.589 10 N -0.589 5.589 11 C 0.054 3.946 12 C -0.114 4.114 13 C -0.106 4.106 14 C 0.042 3.958 15 H -0.016 1.016 16 C -0.539 4.539 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.125 3.875 25 C -0.251 4.251 26 S 0.309 5.691 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.171 0.829 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 25.618 -9.635 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 C -0.213 4.213 4 C -0.196 4.196 5 C -0.255 4.255 6 N -0.164 5.164 7 C -0.137 4.137 8 C 0.353 3.647 9 O -0.471 6.471 10 N -0.318 5.318 11 C -0.068 4.068 12 C -0.152 4.152 13 C -0.144 4.144 14 C 0.022 3.978 15 H 0.002 0.998 16 C -0.577 4.577 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.556 5.556 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.191 1.191 24 C 0.003 3.997 25 C -0.393 4.393 26 S 0.569 5.431 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.187 0.813 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.198 26.048 -9.200 27.809 hybrid contribution 0.138 -2.915 1.258 3.178 sum -3.060 23.133 -7.941 24.649 Atomic orbital electron populations 1.21887 0.91523 1.02663 1.03438 1.19465 0.97182 0.94950 0.87649 1.22088 1.02019 0.92392 1.04794 1.21882 1.01051 1.00488 0.96136 1.28171 1.00860 0.93391 1.03056 1.66288 1.22653 1.12902 1.14522 1.20160 1.03614 0.95701 0.94183 1.17881 0.79731 0.84569 0.82553 1.90755 1.50090 1.76926 1.29288 1.48348 1.36981 1.10049 1.36457 1.23371 0.92636 1.04736 0.86070 1.21818 1.01371 0.94524 0.97508 1.21604 0.98649 0.95896 0.98214 1.18869 0.93558 0.93622 0.91703 0.99796 1.21487 1.16572 0.96182 1.23444 0.91813 1.25958 0.94530 1.02721 0.95883 1.70090 1.19807 1.38066 1.27637 0.85536 0.78082 0.79578 0.78039 1.19118 1.21275 1.19141 1.21789 0.99978 0.77465 1.00509 1.26873 1.05056 0.99634 1.07754 1.82226 1.42637 1.07934 1.10255 0.92189 0.89174 0.92987 0.91361 0.88402 0.90966 0.93260 0.89109 0.92817 0.92728 0.81328 0.88373 0.93853 0.92854 0.92761 0.93042 0.90448 0.94786 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.45 71.98 0.61 -1.06 16 2 C 0.01 0.15 0.99 -52.93 -0.05 0.10 16 3 C -0.16 -1.10 7.53 71.98 0.54 -0.56 16 4 C -0.14 -1.91 8.44 71.98 0.61 -1.31 16 5 C 0.02 0.48 5.74 88.58 0.51 0.98 16 6 N -0.45 -12.99 6.71 -180.83 -1.21 -14.20 16 7 C 0.00 -0.09 6.51 40.56 0.26 0.17 16 8 C 0.57 26.80 7.65 86.62 0.66 27.46 16 9 O -0.59 -32.75 16.18 -4.15 -0.07 -32.82 16 10 N -0.59 -27.71 2.97 -822.94 -2.45 -30.16 16 11 C 0.05 1.98 6.26 86.36 0.54 2.52 16 12 C -0.11 -4.09 6.11 30.78 0.19 -3.90 16 13 C -0.11 -4.58 5.11 30.73 0.16 -4.43 16 14 C 0.04 2.29 2.25 -11.46 -0.03 2.26 16 15 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 16 C -0.54 -31.30 8.56 25.60 0.22 -31.08 16 17 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 18 C 0.01 0.49 5.30 84.65 0.45 0.94 16 19 N -0.92 -58.14 11.39 21.45 0.24 -57.89 16 20 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.12 6.89 5.38 86.36 0.46 7.35 16 25 C -0.25 -7.10 10.62 67.12 0.71 -6.39 16 26 S 0.31 5.27 21.28 -56.49 -1.20 4.07 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.46 7.91 -2.39 -0.02 0.44 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.42 7.91 -2.39 -0.02 0.40 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.17 5.56 3.56 -76.92 -0.27 5.28 16 38 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.08 4.98 5.17 -2.39 -0.01 4.97 16 44 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.18 5.18 8.04 -2.91 -0.02 5.15 16 Total: -1.00 -78.45 366.96 3.90 -74.55 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.71 Total: 15.55 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.85 Total: -6.94 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.42 Total: -102.26 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.07 Total: -32.82 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.20 Total: 4.07 kcal Total: -78.45 3.90 -74.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.421 kcal (2) G-P(sol) polarization free energy of solvation -78.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds