Wall clock time and date at job start Tue Mar 31 2020 13:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53003 * 109.47271 * 120.00080 * 2 1 3 5 5 C 1.50703 * 109.47075 * 240.00101 * 2 1 3 6 6 N 1.28650 * 124.71794 * 59.99905 * 5 2 1 7 7 C 1.33563 * 115.76540 * 180.02562 * 6 5 2 8 8 C 1.47263 * 123.14043 * 180.02562 * 7 6 5 9 9 O 1.21633 * 119.99798 * 187.06479 * 8 7 6 10 10 N 1.34782 * 120.00115 * 7.05525 * 8 7 6 11 11 C 1.46926 * 120.62913 * 7.34509 * 10 8 7 12 12 C 1.53187 * 108.77214 * 233.58023 * 11 10 8 13 13 C 1.53047 * 109.31438 * 305.36687 * 12 11 10 14 14 C 1.53030 * 109.54002 * 61.36280 * 13 12 11 15 15 H 1.09004 * 109.49676 * 58.58860 * 14 13 12 16 16 C 1.50696 * 109.49920 * 178.65356 * 14 13 12 17 17 H 1.07997 * 119.99881 * 2.03314 * 16 14 13 18 18 C 1.37880 * 120.00267 * 182.02974 * 16 14 13 19 19 N 1.31516 * 120.00035 * 354.10731 * 18 16 14 20 20 Si 1.86802 * 120.00096 * 174.10005 * 18 16 14 21 21 H 1.48494 * 109.47093 * 95.00991 * 20 18 16 22 22 H 1.48502 * 109.46922 * 215.00823 * 20 18 16 23 23 H 1.48502 * 109.47103 * 335.00463 * 20 18 16 24 24 C 1.46923 * 120.62878 * 187.05561 * 10 8 7 25 25 C 1.35207 * 113.71281 * 359.97438 * 7 6 5 26 26 S 1.70772 * 124.72079 * 239.69829 * 5 2 1 27 27 H 1.09002 * 109.47561 * 60.00033 * 1 2 3 28 28 H 1.09002 * 109.46977 * 299.99449 * 1 2 3 29 29 H 1.09004 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46976 * 59.99946 * 3 2 1 31 31 H 1.08998 * 109.47373 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47588 * 300.00467 * 3 2 1 33 33 H 1.09000 * 109.46751 * 60.00150 * 4 2 1 34 34 H 1.08998 * 109.46664 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47011 * 300.00132 * 4 2 1 36 36 H 1.09002 * 109.58534 * 353.36469 * 11 10 8 37 37 H 1.08994 * 109.58731 * 113.79445 * 11 10 8 38 38 H 1.09004 * 109.50047 * 65.31130 * 12 11 10 39 39 H 1.09000 * 109.49934 * 185.41215 * 12 11 10 40 40 H 1.09003 * 109.46097 * 181.39159 * 13 12 11 41 41 H 1.09002 * 109.45436 * 301.34367 * 13 12 11 42 42 H 0.97001 * 120.00263 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58940 * 246.20729 * 24 10 8 44 44 H 1.09004 * 109.59083 * 6.63196 * 24 10 8 45 45 H 1.08008 * 125.57932 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7781 -0.3508 -2.4393 7 6 2.3154 -1.1116 -3.3965 8 6 2.1296 -0.8482 -4.8335 9 8 2.5355 -1.6474 -5.6557 10 7 1.5098 0.2784 -5.2375 11 6 1.1575 1.3269 -4.2704 12 6 -0.3350 1.6433 -4.4082 13 6 -0.6443 2.0010 -5.8638 14 6 -0.3184 0.8076 -6.7645 15 1 -0.9038 -0.0564 -6.4497 16 6 -0.6543 1.1491 -8.1933 17 1 -1.0289 2.1316 -8.4399 18 6 -0.4833 0.2075 -9.1858 19 7 0.0804 -0.9475 -8.9065 20 14 -1.0526 0.5719 -10.9272 21 1 0.0871 1.0977 -11.7207 22 1 -1.5583 -0.6758 -11.5540 23 1 -2.1393 1.5834 -10.8913 24 6 1.1794 0.4841 -6.6542 25 6 3.0466 -2.1456 -2.9230 26 16 3.0243 -2.1004 -1.2143 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -0.2075 2.1392 36 1 1.3648 0.9761 -3.2594 37 1 1.7416 2.2241 -4.4751 38 1 -0.9203 0.7715 -4.1157 39 1 -0.5894 2.4855 -3.7647 40 1 -1.7010 2.2506 -5.9598 41 1 -0.0405 2.8576 -6.1633 42 1 0.2003 -1.6101 -9.6046 43 1 1.7653 1.3139 -7.0494 44 1 1.4012 -0.4229 -7.2166 45 1 3.5641 -2.8774 -3.5257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:14 Heat of formation + Delta-G solvation = 2.903981 kcal Electronic energy + Delta-G solvation = -26001.786898 eV Core-core repulsion = 22531.864013 eV Total energy + Delta-G solvation = -3469.922886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60317 -38.67616 -36.92806 -36.37034 -33.23962 -31.63191 -30.07975 -29.66666 -27.73718 -27.48784 -26.34158 -24.82331 -24.46800 -22.10230 -21.62626 -19.58528 -19.52740 -18.59859 -17.70504 -16.39981 -16.05277 -15.58451 -15.30140 -14.86415 -14.40607 -14.35741 -14.33002 -13.68677 -13.58727 -13.52263 -13.19715 -12.67427 -12.59712 -12.52173 -12.42571 -12.04778 -11.94146 -11.86927 -11.71491 -11.66532 -11.29782 -11.23317 -10.96786 -10.84584 -10.47639 -10.37736 -10.17687 -9.82789 -9.65411 -9.47083 -9.16158 -8.98039 -8.86923 -8.59564 -8.38267 -7.59921 -5.95426 -4.03789 0.58095 1.20357 1.61623 2.16110 3.33218 3.40559 3.43804 3.64321 3.87727 3.97955 4.45935 4.47078 4.60227 4.70756 5.03594 5.22043 5.24987 5.33630 5.34312 5.37693 5.48892 5.56501 5.61286 5.65532 5.69747 5.78920 5.80580 5.86759 6.03813 6.06371 6.10451 6.33318 6.47210 6.67110 6.80535 6.86862 6.99757 7.08101 7.25069 7.43552 7.50319 7.69580 7.93833 8.05953 8.36738 8.44807 8.88689 9.01233 9.61437 11.09440 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.003598 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.053258 B = 7780.664391 C = 8674.279344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.012 3.988 3 C -0.137 4.137 4 C -0.154 4.154 5 C 0.030 3.970 6 N -0.426 5.426 7 C 0.028 3.972 8 C 0.576 3.424 9 O -0.537 6.537 10 N -0.582 5.582 11 C 0.057 3.943 12 C -0.124 4.124 13 C -0.112 4.112 14 C 0.042 3.958 15 H 0.027 0.973 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.112 3.888 25 C -0.235 4.235 26 S 0.193 5.807 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.042 0.958 44 H 0.122 0.878 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 0.928 23.403 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 C -0.195 4.195 4 C -0.212 4.212 5 C -0.248 4.248 6 N -0.141 5.141 7 C -0.106 4.106 8 C 0.360 3.640 9 O -0.414 6.414 10 N -0.312 5.312 11 C -0.067 4.067 12 C -0.163 4.163 13 C -0.150 4.150 14 C 0.023 3.977 15 H 0.045 0.955 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.377 4.377 26 S 0.452 5.548 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.140 0.860 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.640 0.167 23.503 24.170 hybrid contribution -0.473 0.382 -2.195 2.278 sum 5.167 0.548 21.308 21.932 Atomic orbital electron populations 1.21870 0.92033 1.02566 1.03067 1.19227 0.96781 0.95166 0.87996 1.21869 1.01162 0.93438 1.03067 1.22033 1.01622 1.00757 0.96809 1.27501 1.01418 0.98802 0.97092 1.66585 1.21870 1.27186 0.98478 1.20858 1.00062 0.94172 0.95484 1.17157 0.79475 0.82598 0.84786 1.90811 1.50696 1.47123 1.52808 1.48329 1.55309 1.16685 1.10908 1.23033 0.95438 0.90494 0.97696 1.21825 0.96127 1.00188 0.98128 1.21655 0.99883 0.99887 0.93577 1.19038 0.91507 0.93061 0.94106 0.95454 1.21106 1.44069 0.99022 0.91658 0.92360 1.25062 0.94823 0.95136 0.99008 1.69891 1.41947 1.06610 1.33374 0.86579 0.78977 0.77749 0.84703 1.20755 1.21170 1.19876 1.22482 0.97950 1.03741 0.76666 1.26588 1.06590 1.04689 0.99816 1.82640 1.45437 1.26052 1.00670 0.91054 0.91611 0.92424 0.91551 0.92453 0.91171 0.91771 0.91817 0.90634 0.83608 0.93617 0.92570 0.92746 0.93326 0.93441 0.92711 0.93981 0.86018 0.79546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.45 37.16 0.31 -0.84 16 2 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 3 C -0.14 -1.07 8.45 37.16 0.31 -0.75 16 4 C -0.15 -0.92 7.53 37.16 0.28 -0.64 16 5 C 0.03 0.35 5.74 -13.61 -0.08 0.27 16 6 N -0.43 -6.33 6.70 -8.51 -0.06 -6.39 16 7 C 0.03 0.49 6.52 -84.53 -0.55 -0.06 16 8 C 0.58 12.81 7.65 -12.59 -0.10 12.72 16 9 O -0.54 -13.76 16.18 5.25 0.08 -13.68 16 10 N -0.58 -12.98 2.97 -173.83 -0.52 -13.50 16 11 C 0.06 1.05 6.27 -3.71 -0.02 1.03 16 12 C -0.12 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C -0.11 -2.41 5.10 -26.69 -0.14 -2.54 16 14 C 0.04 1.09 2.27 -91.43 -0.21 0.89 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.58 8.53 -34.44 -0.29 -14.88 16 17 H 0.06 1.60 7.75 -52.49 -0.41 1.19 16 18 C 0.06 1.77 5.35 -17.82 -0.10 1.68 16 19 N -0.88 -26.33 11.35 55.43 0.63 -25.70 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 2.89 5.42 -3.49 -0.02 2.87 16 25 C -0.24 -3.38 10.62 29.65 0.31 -3.06 16 26 S 0.19 1.95 21.28 -107.50 -2.29 -0.34 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 34 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.15 2.44 3.55 -90.37 -0.32 2.11 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.12 3.61 5.15 -51.93 -0.27 3.34 16 45 H 0.19 2.57 8.04 -52.48 -0.42 2.14 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -32.70 366.94 -9.53 -42.23 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.29 Total: 0.95 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.60 Total: -5.81 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.06 Total: -45.59 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.29 Total: -0.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.70 -9.53 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.129 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds