Wall clock time and date at job start Tue Mar 31 2020 13:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53003 * 109.47271 * 120.00080 * 2 1 3 5 5 C 1.50703 * 109.47075 * 240.00101 * 2 1 3 6 6 N 1.28650 * 124.71794 * 59.99905 * 5 2 1 7 7 C 1.33563 * 115.76540 * 180.02562 * 6 5 2 8 8 C 1.47263 * 123.14043 * 180.02562 * 7 6 5 9 9 O 1.21633 * 119.99798 * 187.06479 * 8 7 6 10 10 N 1.34782 * 120.00115 * 7.05525 * 8 7 6 11 11 C 1.46926 * 120.62913 * 7.34509 * 10 8 7 12 12 C 1.53187 * 108.77214 * 233.58023 * 11 10 8 13 13 C 1.53047 * 109.31438 * 305.36687 * 12 11 10 14 14 C 1.53030 * 109.54002 * 61.36280 * 13 12 11 15 15 H 1.09004 * 109.49676 * 58.58860 * 14 13 12 16 16 C 1.50696 * 109.49920 * 178.65356 * 14 13 12 17 17 H 1.07997 * 119.99881 * 2.03314 * 16 14 13 18 18 C 1.37880 * 120.00267 * 182.02974 * 16 14 13 19 19 N 1.31516 * 120.00035 * 354.10731 * 18 16 14 20 20 Si 1.86802 * 120.00096 * 174.10005 * 18 16 14 21 21 H 1.48494 * 109.47093 * 95.00991 * 20 18 16 22 22 H 1.48502 * 109.46922 * 215.00823 * 20 18 16 23 23 H 1.48502 * 109.47103 * 335.00463 * 20 18 16 24 24 C 1.46923 * 120.62878 * 187.05561 * 10 8 7 25 25 C 1.35207 * 113.71281 * 359.97438 * 7 6 5 26 26 S 1.70772 * 124.72079 * 239.69829 * 5 2 1 27 27 H 1.09002 * 109.47561 * 60.00033 * 1 2 3 28 28 H 1.09002 * 109.46977 * 299.99449 * 1 2 3 29 29 H 1.09004 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46976 * 59.99946 * 3 2 1 31 31 H 1.08998 * 109.47373 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47588 * 300.00467 * 3 2 1 33 33 H 1.09000 * 109.46751 * 60.00150 * 4 2 1 34 34 H 1.08998 * 109.46664 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47011 * 300.00132 * 4 2 1 36 36 H 1.09002 * 109.58534 * 353.36469 * 11 10 8 37 37 H 1.08994 * 109.58731 * 113.79445 * 11 10 8 38 38 H 1.09004 * 109.50047 * 65.31130 * 12 11 10 39 39 H 1.09000 * 109.49934 * 185.41215 * 12 11 10 40 40 H 1.09003 * 109.46097 * 181.39159 * 13 12 11 41 41 H 1.09002 * 109.45436 * 301.34367 * 13 12 11 42 42 H 0.97001 * 120.00263 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58940 * 246.20729 * 24 10 8 44 44 H 1.09004 * 109.59083 * 6.63196 * 24 10 8 45 45 H 1.08008 * 125.57932 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7781 -0.3508 -2.4393 7 6 2.3154 -1.1116 -3.3965 8 6 2.1296 -0.8482 -4.8335 9 8 2.5355 -1.6474 -5.6557 10 7 1.5098 0.2784 -5.2375 11 6 1.1575 1.3269 -4.2704 12 6 -0.3350 1.6433 -4.4082 13 6 -0.6443 2.0010 -5.8638 14 6 -0.3184 0.8076 -6.7645 15 1 -0.9038 -0.0564 -6.4497 16 6 -0.6543 1.1491 -8.1933 17 1 -1.0289 2.1316 -8.4399 18 6 -0.4833 0.2075 -9.1858 19 7 0.0804 -0.9475 -8.9065 20 14 -1.0526 0.5719 -10.9272 21 1 0.0871 1.0977 -11.7207 22 1 -1.5583 -0.6758 -11.5540 23 1 -2.1393 1.5834 -10.8913 24 6 1.1794 0.4841 -6.6542 25 6 3.0466 -2.1456 -2.9230 26 16 3.0243 -2.1004 -1.2143 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -0.2075 2.1392 36 1 1.3648 0.9761 -3.2594 37 1 1.7416 2.2241 -4.4751 38 1 -0.9203 0.7715 -4.1157 39 1 -0.5894 2.4855 -3.7647 40 1 -1.7010 2.2506 -5.9598 41 1 -0.0405 2.8576 -6.1633 42 1 0.2003 -1.6101 -9.6046 43 1 1.7653 1.3139 -7.0494 44 1 1.4012 -0.4229 -7.2166 45 1 3.5641 -2.8774 -3.5257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:13 Heat of formation + Delta-G solvation = -16.918787 kcal Electronic energy + Delta-G solvation = -26002.646478 eV Core-core repulsion = 22531.864013 eV Total energy + Delta-G solvation = -3470.782465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89538 -40.13142 -38.43777 -37.45730 -35.27584 -33.47136 -31.60757 -31.15916 -28.24380 -28.08316 -27.89864 -26.69942 -25.87797 -23.50964 -23.34730 -21.19125 -20.51421 -19.91366 -19.15954 -18.38580 -17.33624 -17.07010 -16.59854 -16.49642 -16.10030 -15.57514 -15.24237 -15.13416 -14.95584 -14.68509 -14.45743 -14.42953 -14.21647 -13.80913 -13.53651 -13.16283 -12.99967 -12.93634 -12.85700 -12.70755 -12.50503 -12.45086 -12.33361 -12.22259 -11.97834 -11.90692 -11.74116 -11.66993 -11.25439 -11.02125 -10.96820 -10.63965 -10.59606 -9.98010 -9.91555 -9.39234 -8.13729 -6.31727 -0.50319 0.24940 0.57704 0.89634 1.38542 1.39172 1.51402 2.18746 2.30883 2.40462 2.84036 3.13690 3.57896 3.91558 4.02508 4.03709 4.17078 4.20200 4.23352 4.34813 4.42805 4.54512 4.60467 4.77404 4.81587 4.82931 4.84879 4.95048 5.03767 5.06842 5.07146 5.10718 5.17270 5.23132 5.33404 5.33928 5.41853 5.46761 5.49374 5.53614 5.71808 5.86016 5.93831 6.28795 6.38279 6.65888 6.80265 7.17996 7.38441 8.89623 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.003598 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.053258 B = 7780.664391 C = 8674.279344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 C -0.136 4.136 4 C -0.155 4.155 5 C 0.023 3.977 6 N -0.448 5.448 7 C -0.003 4.003 8 C 0.566 3.434 9 O -0.589 6.589 10 N -0.590 5.590 11 C 0.053 3.947 12 C -0.114 4.114 13 C -0.106 4.106 14 C 0.042 3.958 15 H -0.015 1.015 16 C -0.538 4.538 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.916 5.916 20 Si 0.963 3.037 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.261 1.261 24 C 0.124 3.876 25 C -0.251 4.251 26 S 0.309 5.691 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.173 0.827 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.260 0.740 43 H 0.033 0.967 44 H 0.079 0.921 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 2.048 27.022 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 C -0.195 4.195 4 C -0.213 4.213 5 C -0.255 4.255 6 N -0.164 5.164 7 C -0.136 4.136 8 C 0.352 3.648 9 O -0.471 6.471 10 N -0.319 5.319 11 C -0.069 4.069 12 C -0.152 4.152 13 C -0.144 4.144 14 C 0.023 3.977 15 H 0.003 0.997 16 C -0.576 4.576 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.185 1.185 24 C 0.002 3.998 25 C -0.393 4.393 26 S 0.569 5.431 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.188 0.812 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.097 0.903 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.654 1.317 27.178 27.791 hybrid contribution -0.434 -0.039 -3.150 3.180 sum 5.221 1.278 24.028 24.622 Atomic orbital electron populations 1.21884 0.92050 1.02391 1.03234 1.19466 0.96746 0.95625 0.87413 1.21887 1.01339 0.92919 1.03371 1.22088 1.02174 1.00913 0.96116 1.28178 1.00782 0.99534 0.96969 1.66274 1.22902 1.27947 0.99232 1.20167 1.03419 0.96730 0.93328 1.17884 0.78226 0.81642 0.87014 1.90753 1.52794 1.48539 1.54977 1.48372 1.55451 1.18026 1.10033 1.23402 0.95618 0.89760 0.98096 1.21762 0.95737 1.01248 0.96468 1.21554 1.00244 0.97777 0.94799 1.18960 0.90833 0.93409 0.94544 0.99697 1.21513 1.43928 0.99261 0.92916 0.91846 1.25966 0.94737 0.94849 1.03562 1.70101 1.43126 1.07709 1.34564 0.85467 0.78803 0.77731 0.79211 1.20098 1.21034 1.18505 1.21928 0.97800 1.01106 0.78941 1.26874 1.05334 1.03516 1.03604 1.82227 1.42353 1.23172 0.95306 0.93245 0.89108 0.92806 0.89178 0.92198 0.92983 0.91352 0.90985 0.88396 0.81222 0.92779 0.93827 0.88447 0.92818 0.92819 0.93043 0.94872 0.90321 0.79818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.45 71.98 0.61 -1.30 16 2 C 0.01 0.15 0.99 -52.93 -0.05 0.10 16 3 C -0.14 -1.67 8.45 71.98 0.61 -1.06 16 4 C -0.16 -1.10 7.53 71.98 0.54 -0.56 16 5 C 0.02 0.48 5.74 88.58 0.51 0.99 16 6 N -0.45 -12.98 6.70 -180.83 -1.21 -14.19 16 7 C 0.00 -0.09 6.52 40.56 0.26 0.17 16 8 C 0.57 26.80 7.65 86.62 0.66 27.46 16 9 O -0.59 -32.76 16.18 -4.14 -0.07 -32.83 16 10 N -0.59 -27.76 2.97 -822.11 -2.44 -30.20 16 11 C 0.05 1.96 6.27 86.36 0.54 2.50 16 12 C -0.11 -4.09 6.08 30.67 0.19 -3.91 16 13 C -0.11 -4.59 5.10 30.62 0.16 -4.43 16 14 C 0.04 2.29 2.27 -11.32 -0.03 2.26 16 15 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 16 C -0.54 -31.25 8.53 25.60 0.22 -31.03 16 17 H 0.06 3.53 7.75 -2.91 -0.02 3.51 16 18 C 0.01 0.48 5.35 84.66 0.45 0.93 16 19 N -0.92 -57.97 11.35 21.45 0.24 -57.73 16 20 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.12 6.87 5.42 86.51 0.47 7.34 16 25 C -0.25 -7.11 10.62 67.12 0.71 -6.40 16 26 S 0.31 5.27 21.28 -56.49 -1.20 4.07 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.46 7.92 -2.39 -0.02 0.44 16 34 H 0.07 0.42 7.90 -2.39 -0.02 0.40 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.17 5.60 3.55 -78.30 -0.28 5.32 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 5.07 5.15 -2.38 -0.01 5.05 16 45 H 0.18 5.19 8.04 -2.91 -0.02 5.16 16 Total: -1.00 -78.36 366.94 3.91 -74.45 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.70 Total: 15.52 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.85 Total: -6.93 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.41 Total: -102.12 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.07 Total: -32.83 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.20 Total: 4.07 kcal Total: -78.36 3.91 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.532 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds