Wall clock time and date at job start Tue Mar 31 2020 13:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.50703 * 109.46851 * 180.02562 * 3 2 1 5 5 C 1.33818 * 124.51836 * 90.00961 * 4 3 2 6 6 C 1.37472 * 115.09860 * 179.97438 * 5 4 3 7 7 C 1.36652 * 113.30019 * 359.97438 * 6 5 4 8 8 C 1.46577 * 125.45711 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00473 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99436 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99723 * 180.02562 * 10 8 7 12 12 C 1.53045 * 109.45675 * 275.07316 * 11 10 8 13 13 C 1.53200 * 109.31042 * 178.61550 * 12 11 10 14 14 N 1.46930 * 108.77625 * 54.63088 * 13 12 11 15 15 C 1.36934 * 120.62985 * 126.41357 * 14 13 12 16 16 H 1.08004 * 120.00001 * 331.82406 * 15 14 13 17 17 C 1.38810 * 119.99858 * 151.82554 * 15 14 13 18 18 N 1.31619 * 119.99947 * 343.07598 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 163.08273 * 17 15 14 20 20 H 1.48497 * 109.47567 * 59.99480 * 19 17 15 21 21 H 1.48500 * 109.47204 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47003 * 299.99431 * 19 17 15 23 23 C 1.46928 * 118.73945 * 306.39567 * 14 13 12 24 24 C 1.53034 * 109.46105 * 155.00554 * 11 10 8 25 25 S 1.70616 * 124.52790 * 269.70212 * 4 3 2 26 26 H 1.08997 * 109.47429 * 59.98910 * 1 2 3 27 27 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46842 * 299.99488 * 1 2 3 29 29 H 1.09008 * 109.46842 * 240.00512 * 2 1 3 30 30 H 1.08997 * 109.47429 * 120.01090 * 2 1 3 31 31 H 1.09000 * 109.46484 * 60.01059 * 3 2 1 32 32 H 1.08997 * 109.47907 * 300.00797 * 3 2 1 33 33 H 1.07995 * 122.45305 * 359.93300 * 5 4 3 34 34 H 1.08001 * 123.34942 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00397 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.45993 * 35.02562 * 11 10 8 37 37 H 1.09001 * 109.49399 * 298.56255 * 12 11 10 38 38 H 1.08996 * 109.50241 * 58.66390 * 12 11 10 39 39 H 1.09004 * 109.58334 * 294.85138 * 13 12 11 40 40 H 1.08993 * 109.70419 * 174.49107 * 13 12 11 41 41 H 0.97003 * 119.99716 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58696 * 293.82029 * 23 14 13 43 43 H 1.09001 * 109.70545 * 173.46192 * 23 14 13 44 44 H 1.09006 * 109.49232 * 301.33434 * 24 11 10 45 45 H 1.08998 * 109.50274 * 61.39891 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3048 1.4428 -1.1035 6 6 5.6611 1.4432 -0.8791 7 6 5.9895 1.4438 0.4474 8 6 7.3528 1.4438 0.9858 9 8 8.3059 1.4438 0.2292 10 7 7.5507 1.4450 2.3190 11 6 8.9133 1.4456 2.8573 12 6 9.4344 0.0083 2.9271 13 6 10.8716 0.0157 3.4577 14 7 10.8981 0.7303 4.7413 15 6 11.4349 0.1431 5.8557 16 1 11.4253 -0.9321 5.9574 17 6 11.9915 0.9298 6.8549 18 7 12.3091 2.1826 6.6059 19 14 12.2898 0.2103 8.5527 20 1 13.2185 -0.9434 8.4454 21 1 12.8885 1.2470 9.4314 22 1 11.0000 -0.2447 9.1312 23 6 10.3380 2.0871 4.8061 24 6 8.9069 2.0564 4.2604 25 16 4.5147 1.4495 1.4046 26 1 -0.3634 0.5140 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8898 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9565 -0.8898 33 1 3.8820 1.4420 -2.0973 34 1 6.3942 1.4431 -1.6723 35 1 6.7910 1.4454 2.9221 36 1 9.5601 2.0349 2.2075 37 1 8.8026 -0.5757 3.5963 38 1 9.4167 -0.4340 1.9310 39 1 11.5219 0.5220 2.7443 40 1 11.2152 -1.0084 3.6026 41 1 12.6976 2.7324 7.3042 42 1 10.9448 2.7622 4.2026 43 1 10.3274 2.4313 5.8403 44 1 8.5137 3.0720 4.2132 45 1 8.2796 1.4535 4.9169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601120243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:04 Heat of formation + Delta-G solvation = -4.699815 kcal Electronic energy + Delta-G solvation = -24290.449933 eV Core-core repulsion = 20820.197322 eV Total energy + Delta-G solvation = -3470.252611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80424 -38.33372 -37.21996 -35.21250 -34.42649 -32.21934 -30.76270 -30.08728 -29.39716 -27.15437 -25.04136 -23.99293 -22.44789 -22.15254 -21.85381 -20.87703 -19.77720 -18.93262 -17.97228 -16.85998 -16.28044 -15.78764 -15.32053 -15.04641 -14.96161 -14.68056 -14.14605 -13.91463 -13.75292 -13.55086 -13.44997 -13.04676 -12.88769 -12.82266 -12.47785 -12.35682 -12.13807 -11.84001 -11.60660 -11.46483 -11.25917 -11.12026 -11.01804 -10.87002 -10.71451 -10.50663 -10.29244 -10.04949 -9.98318 -9.74067 -9.52671 -8.95071 -8.81140 -8.67597 -8.45232 -6.68391 -5.79310 -3.21608 0.33421 1.24244 1.66933 2.22570 3.26733 3.29350 3.38998 3.44297 3.45465 4.25750 4.49735 4.51283 4.60041 4.82607 4.90391 5.04867 5.13920 5.26321 5.33252 5.34435 5.36293 5.41540 5.49733 5.58175 5.61980 5.66510 5.80194 5.84101 5.86498 5.96176 6.07620 6.16082 6.24679 6.31591 6.52466 6.56080 6.58139 6.79714 6.88428 6.99609 7.31227 7.56830 7.66889 7.79647 8.29155 8.44816 9.20861 9.84006 10.41247 11.29657 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.002404 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.531062 B =11646.330213 C =12268.133747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.196 4.196 5 C -0.152 4.152 6 C -0.057 4.057 7 C -0.260 4.260 8 C 0.585 3.415 9 O -0.531 6.531 10 N -0.719 5.719 11 C 0.152 3.848 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.175 3.825 24 C -0.147 4.147 25 S 0.198 5.802 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.392 0.608 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.022 0.978 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.308 -0.807 -13.045 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.316 4.316 5 C -0.183 4.183 6 C -0.090 4.090 7 C -0.381 4.381 8 C 0.371 3.629 9 O -0.409 6.409 10 N -0.368 5.368 11 C 0.049 3.951 12 C -0.180 4.180 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.187 4.187 25 S 0.466 5.534 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.801 -0.672 -11.877 25.717 hybrid contribution 0.034 -0.303 -0.471 0.561 sum -22.767 -0.975 -12.348 25.919 Atomic orbital electron populations 1.21782 0.95282 1.02012 1.01956 1.21573 0.95965 0.95515 1.02875 1.20249 0.87119 0.98101 1.03550 1.24231 1.01070 1.08420 0.97832 1.19942 0.92602 1.06234 0.99496 1.20751 0.96115 0.96876 0.95287 1.24749 0.97073 1.18180 0.98049 1.16981 0.86525 0.76714 0.82703 1.90827 1.41746 1.50316 1.58023 1.46262 1.10224 1.74574 1.05778 1.21107 0.80775 0.97718 0.95522 1.22390 0.99911 0.95537 1.00147 1.20875 0.92050 0.96678 0.88314 1.44086 1.68141 1.14501 1.04800 1.19146 1.31918 0.91542 0.95594 0.91684 1.25060 0.98263 0.96633 0.99736 1.70017 1.44851 1.07548 1.32360 0.86357 0.77963 0.78074 0.84290 1.20875 1.21646 1.21058 1.20740 0.86659 0.86345 1.01437 1.22555 1.02931 0.99089 0.94151 1.83010 0.94412 1.68195 1.07735 0.92586 0.92407 0.92560 0.91463 0.91605 0.90583 0.89825 0.84000 0.83000 0.77408 0.89749 0.92269 0.92642 0.96121 0.92481 0.93541 0.96035 0.88963 0.92657 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.71 5.92 -26.73 -0.16 -0.86 16 3 C -0.05 -0.31 5.65 -27.88 -0.16 -0.47 16 4 C -0.20 -1.68 5.53 -35.86 -0.20 -1.88 16 5 C -0.15 -1.38 9.99 -41.41 -0.41 -1.80 16 6 C -0.06 -0.66 10.01 -40.43 -0.40 -1.06 16 7 C -0.26 -3.32 6.45 -36.79 -0.24 -3.56 16 8 C 0.59 9.35 7.75 -12.90 -0.10 9.25 16 9 O -0.53 -10.34 16.50 5.19 0.09 -10.25 16 10 N -0.72 -10.89 5.07 -55.10 -0.28 -11.17 16 11 C 0.15 2.72 2.42 -67.89 -0.16 2.55 16 12 C -0.14 -2.61 5.65 -26.60 -0.15 -2.76 16 13 C 0.15 3.22 6.52 -3.70 -0.02 3.19 16 14 N -0.59 -14.87 2.99 -172.31 -0.52 -15.39 16 15 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 19 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 24 C -0.15 -2.73 5.55 -26.61 -0.15 -2.88 16 25 S 0.20 1.91 22.10 -107.50 -2.38 -0.47 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.39 5.00 7.72 -40.82 -0.31 4.69 16 36 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.40 6.07 -51.93 -0.31 2.09 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -31.23 377.36 -11.17 -42.40 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.33 Total: 1.74 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.04 Total: -3.63 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.17 Total: -52.02 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.23 -11.17 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601120243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.702 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds