Wall clock time and date at job start Tue Mar 31 2020 13:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.50703 * 109.46851 * 180.02562 * 3 2 1 5 5 C 1.33818 * 124.51836 * 90.00961 * 4 3 2 6 6 C 1.37472 * 115.09860 * 179.97438 * 5 4 3 7 7 C 1.36652 * 113.30019 * 359.97438 * 6 5 4 8 8 C 1.46577 * 125.45711 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00473 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99436 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99723 * 180.02562 * 10 8 7 12 12 C 1.53045 * 109.45675 * 275.07316 * 11 10 8 13 13 C 1.53200 * 109.31042 * 178.61550 * 12 11 10 14 14 N 1.46930 * 108.77625 * 54.63088 * 13 12 11 15 15 C 1.36934 * 120.62985 * 126.41357 * 14 13 12 16 16 H 1.08004 * 120.00001 * 331.82406 * 15 14 13 17 17 C 1.38810 * 119.99858 * 151.82554 * 15 14 13 18 18 N 1.31619 * 119.99947 * 343.07598 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 163.08273 * 17 15 14 20 20 H 1.48497 * 109.47567 * 59.99480 * 19 17 15 21 21 H 1.48500 * 109.47204 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47003 * 299.99431 * 19 17 15 23 23 C 1.46928 * 118.73945 * 306.39567 * 14 13 12 24 24 C 1.53034 * 109.46105 * 155.00554 * 11 10 8 25 25 S 1.70616 * 124.52790 * 269.70212 * 4 3 2 26 26 H 1.08997 * 109.47429 * 59.98910 * 1 2 3 27 27 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46842 * 299.99488 * 1 2 3 29 29 H 1.09008 * 109.46842 * 240.00512 * 2 1 3 30 30 H 1.08997 * 109.47429 * 120.01090 * 2 1 3 31 31 H 1.09000 * 109.46484 * 60.01059 * 3 2 1 32 32 H 1.08997 * 109.47907 * 300.00797 * 3 2 1 33 33 H 1.07995 * 122.45305 * 359.93300 * 5 4 3 34 34 H 1.08001 * 123.34942 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00397 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.45993 * 35.02562 * 11 10 8 37 37 H 1.09001 * 109.49399 * 298.56255 * 12 11 10 38 38 H 1.08996 * 109.50241 * 58.66390 * 12 11 10 39 39 H 1.09004 * 109.58334 * 294.85138 * 13 12 11 40 40 H 1.08993 * 109.70419 * 174.49107 * 13 12 11 41 41 H 0.97003 * 119.99716 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58696 * 293.82029 * 23 14 13 43 43 H 1.09001 * 109.70545 * 173.46192 * 23 14 13 44 44 H 1.09006 * 109.49232 * 301.33434 * 24 11 10 45 45 H 1.08998 * 109.50274 * 61.39891 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3048 1.4428 -1.1035 6 6 5.6611 1.4432 -0.8791 7 6 5.9895 1.4438 0.4474 8 6 7.3528 1.4438 0.9858 9 8 8.3059 1.4438 0.2292 10 7 7.5507 1.4450 2.3190 11 6 8.9133 1.4456 2.8573 12 6 9.4344 0.0083 2.9271 13 6 10.8716 0.0157 3.4577 14 7 10.8981 0.7303 4.7413 15 6 11.4349 0.1431 5.8557 16 1 11.4253 -0.9321 5.9574 17 6 11.9915 0.9298 6.8549 18 7 12.3091 2.1826 6.6059 19 14 12.2898 0.2103 8.5527 20 1 13.2185 -0.9434 8.4454 21 1 12.8885 1.2470 9.4314 22 1 11.0000 -0.2447 9.1312 23 6 10.3380 2.0871 4.8061 24 6 8.9069 2.0564 4.2604 25 16 4.5147 1.4495 1.4046 26 1 -0.3634 0.5140 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8898 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9565 -0.8898 33 1 3.8820 1.4420 -2.0973 34 1 6.3942 1.4431 -1.6723 35 1 6.7910 1.4454 2.9221 36 1 9.5601 2.0349 2.2075 37 1 8.8026 -0.5757 3.5963 38 1 9.4167 -0.4340 1.9310 39 1 11.5219 0.5220 2.7443 40 1 11.2152 -1.0084 3.6026 41 1 12.6976 2.7324 7.3042 42 1 10.9448 2.7622 4.2026 43 1 10.3274 2.4313 5.8403 44 1 8.5137 3.0720 4.2132 45 1 8.2796 1.4535 4.9169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601120243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:03 Heat of formation + Delta-G solvation = -22.109424 kcal Electronic energy + Delta-G solvation = -24291.204870 eV Core-core repulsion = 20820.197322 eV Total energy + Delta-G solvation = -3471.007548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08922 -39.34242 -38.64977 -36.07655 -35.74996 -34.00660 -32.03334 -31.55363 -30.85604 -28.07877 -26.73283 -24.85669 -24.01766 -23.73834 -22.32803 -22.18259 -21.25390 -20.15430 -19.05539 -18.61020 -17.40498 -16.94225 -16.75418 -16.18885 -16.07622 -15.79147 -15.47782 -15.36390 -14.92211 -14.75973 -14.69508 -14.30467 -14.23899 -14.06910 -13.56234 -13.36112 -13.19922 -13.01581 -12.74440 -12.59866 -12.55902 -12.37042 -12.26098 -12.06652 -12.05472 -11.91764 -11.89527 -11.62052 -11.50723 -11.41563 -11.12273 -10.56065 -10.19401 -9.64231 -9.54089 -8.72237 -7.88287 -5.34294 -0.52775 0.44276 0.88979 1.37650 1.49047 1.50682 1.58060 2.04668 2.14929 2.51896 3.27503 3.61639 3.66909 3.74061 3.90191 4.00996 4.07343 4.17154 4.27369 4.30142 4.41972 4.42897 4.61314 4.62685 4.73147 4.74347 4.81623 4.85922 4.95680 4.97475 5.00795 5.05205 5.11137 5.16347 5.24234 5.26285 5.30032 5.42086 5.42758 5.44714 5.46850 5.63362 5.69014 6.37792 6.42503 7.07890 7.13514 7.82559 8.36045 9.18855 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.002404 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.531062 B =11646.330213 C =12268.133747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.052 4.052 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.053 4.053 7 C -0.302 4.302 8 C 0.586 3.414 9 O -0.576 6.576 10 N -0.709 5.709 11 C 0.162 3.838 12 C -0.125 4.125 13 C 0.145 3.855 14 N -0.609 5.609 15 C -0.265 4.265 16 H 0.068 0.932 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.179 3.821 24 C -0.130 4.130 25 S 0.230 5.770 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.008 0.992 40 H 0.060 0.940 41 H 0.251 0.749 42 H -0.004 1.004 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.537 -1.450 -13.140 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.301 4.301 5 C -0.190 4.190 6 C -0.087 4.087 7 C -0.422 4.422 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.359 5.359 11 C 0.058 3.942 12 C -0.165 4.165 13 C 0.019 3.981 14 N -0.332 5.332 15 C -0.395 4.395 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.201 1.201 23 C 0.053 3.947 24 C -0.169 4.169 25 S 0.498 5.502 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.076 -1.331 -11.970 28.723 hybrid contribution 0.967 -0.108 -0.533 1.109 sum -25.109 -1.439 -12.502 28.087 Atomic orbital electron populations 1.21769 0.94359 1.02265 1.02494 1.21559 0.96746 0.95059 1.02465 1.20396 0.85110 0.98640 1.04917 1.24661 1.02355 1.05853 0.97204 1.20106 0.91453 1.06489 1.00937 1.20939 0.97311 0.95709 0.94776 1.24472 0.96689 1.21787 0.99227 1.17384 0.87524 0.75432 0.82296 1.90796 1.43601 1.52421 1.58923 1.45970 1.09396 1.74496 1.06053 1.20735 0.82054 0.96708 0.94701 1.22188 0.97827 0.96253 1.00199 1.20955 0.93963 0.96231 0.86925 1.44340 1.68464 1.14972 1.05440 1.19479 1.31641 0.91889 0.96468 0.91461 1.25842 0.98457 0.97052 1.03204 1.70180 1.45960 1.08810 1.33159 0.85301 0.78024 0.77167 0.79684 1.20304 1.22041 1.20096 1.20559 0.89209 0.85313 0.99620 1.22284 0.99554 1.00816 0.94283 1.82851 0.92465 1.67445 1.07399 0.91874 0.92361 0.92217 0.91681 0.92298 0.89574 0.88140 0.81579 0.83602 0.75706 0.92054 0.91414 0.92237 0.97387 0.92195 0.93972 0.98619 0.91621 0.90431 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.29 16 2 C -0.12 -1.05 5.92 30.59 0.18 -0.87 16 3 C -0.05 -0.45 5.65 29.85 0.17 -0.28 16 4 C -0.18 -2.56 5.53 24.68 0.14 -2.43 16 5 C -0.16 -2.51 9.99 21.08 0.21 -2.30 16 6 C -0.05 -1.16 10.01 21.72 0.22 -0.94 16 7 C -0.30 -7.42 6.45 24.08 0.16 -7.26 16 8 C 0.59 18.62 7.75 86.42 0.67 19.29 16 9 O -0.58 -22.96 16.50 -4.33 -0.07 -23.03 16 10 N -0.71 -20.86 5.07 -446.46 -2.26 -23.13 16 11 C 0.16 5.79 2.42 45.02 0.11 5.90 16 12 C -0.12 -4.63 5.65 30.68 0.17 -4.45 16 13 C 0.15 6.43 6.52 86.36 0.56 7.00 16 14 N -0.61 -31.11 2.99 -699.07 -2.09 -33.20 16 15 C -0.26 -14.62 9.58 84.03 0.81 -13.81 16 16 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 17 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 18 N -0.94 -55.33 11.19 21.65 0.24 -55.09 16 19 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.18 8.67 5.30 86.36 0.46 9.13 16 24 C -0.13 -4.75 5.55 30.67 0.17 -4.58 16 25 S 0.23 3.88 22.10 -56.49 -1.25 2.63 16 26 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.41 9.63 7.72 -92.71 -0.72 8.92 16 36 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.06 2.56 7.93 -2.39 -0.02 2.55 16 41 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 44 H 0.08 2.49 8.14 -2.38 -0.02 2.48 16 45 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -68.82 377.36 2.00 -66.82 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.26 Total: 16.66 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.15 Total: 1.71 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.11 Total: -111.41 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.07 Total: -23.03 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.25 Total: 2.63 kcal Total: -68.82 2.00 -66.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601120243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.708 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds