Wall clock time and date at job start Tue Mar 31 2020 13:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.46679 * 2 1 4 4 C 1.50694 * 109.47439 * 119.99659 * 2 1 3 5 5 C 1.37469 * 123.35490 * 304.69062 * 4 2 1 6 6 C 1.33820 * 115.09930 * 180.02562 * 5 4 2 7 7 S 1.70607 * 110.95718 * 0.02562 * 6 5 4 8 8 C 1.36649 * 123.34778 * 124.70862 * 4 2 1 9 9 C 1.46584 * 125.46009 * 0.24953 * 8 4 2 10 10 O 1.21701 * 120.00038 * 265.35630 * 9 8 4 11 11 N 1.34777 * 119.99841 * 85.35508 * 9 8 4 12 12 C 1.47076 * 120.88557 * 5.31362 * 11 9 8 13 13 C 1.53703 * 108.27701 * 128.75336 * 12 11 9 14 14 N 1.46893 * 109.25496 * 54.08683 * 13 12 11 15 15 C 1.46901 * 111.00064 * 172.60680 * 14 13 12 16 16 C 1.50694 * 109.46898 * 51.90614 * 15 14 13 17 17 H 1.07998 * 120.00536 * 5.60963 * 16 15 14 18 18 C 1.37887 * 119.99855 * 185.60554 * 16 15 14 19 19 N 1.31514 * 119.99891 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47251 * 90.00288 * 20 18 16 22 22 H 1.48507 * 109.46625 * 209.99732 * 20 18 16 23 23 H 1.48497 * 109.47559 * 329.99479 * 20 18 16 24 24 C 1.46901 * 111.26821 * 296.75810 * 14 13 12 25 25 C 1.47077 * 120.87990 * 185.59337 * 11 9 8 26 26 H 1.09003 * 109.47654 * 299.99546 * 1 2 3 27 27 H 1.08994 * 109.47478 * 59.99811 * 1 2 3 28 28 H 1.09004 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47105 * 240.00733 * 2 1 3 30 30 H 1.09000 * 109.46947 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46820 * 300.00199 * 3 2 1 32 32 H 1.08995 * 109.46753 * 60.00518 * 3 2 1 33 33 H 1.07996 * 122.45067 * 0.04424 * 5 4 2 34 34 H 1.08004 * 124.51573 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.63079 * 248.52450 * 12 11 9 36 36 H 1.09009 * 109.62591 * 9.10486 * 12 11 9 37 37 H 1.08994 * 109.64644 * 294.08252 * 13 12 11 38 38 H 1.08997 * 109.41498 * 173.95112 * 13 12 11 39 39 H 1.08998 * 109.46862 * 171.90960 * 15 14 13 40 40 H 1.09002 * 109.46978 * 291.90615 * 15 14 13 41 41 H 0.96999 * 119.99889 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.49225 * 303.13748 * 24 14 13 43 43 H 1.09001 * 109.49203 * 183.06424 * 24 14 13 44 44 H 1.09003 * 109.63122 * 350.89738 * 25 11 9 45 45 H 1.09007 * 109.63217 * 111.47548 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6682 -0.3578 2.5083 6 6 2.2132 -1.1003 3.4791 7 16 3.2323 -2.3036 2.8278 8 6 2.8956 -1.7687 1.1870 9 6 3.4566 -2.3590 -0.0318 10 8 2.9184 -3.3224 -0.5449 11 7 4.5686 -1.8347 -0.5843 12 6 5.3005 -0.7459 0.0804 13 6 6.7824 -1.1445 0.1682 14 7 7.2707 -1.4924 -1.1728 15 6 8.7235 -1.7101 -1.1639 16 6 9.0770 -2.6958 -0.0803 17 1 8.2947 -3.1868 0.4794 18 6 10.3994 -2.9710 0.1967 19 7 11.3522 -2.3736 -0.4852 20 14 10.8376 -4.1934 1.5394 21 1 10.9344 -5.5557 0.9563 22 1 12.1421 -3.8194 2.1427 23 1 9.7850 -4.1768 2.5868 24 6 6.5660 -2.6643 -1.7092 25 6 5.0788 -2.3322 -1.8709 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.9915 0.4584 2.7137 34 1 2.0321 -0.9568 4.5341 35 1 5.1987 0.1713 -0.4997 36 1 4.9006 -0.5946 1.0831 37 1 6.8921 -2.0040 0.8295 38 1 7.3602 -0.3075 0.5600 39 1 9.0376 -2.1043 -2.1304 40 1 9.2315 -0.7644 -0.9748 41 1 12.2825 -2.5668 -0.2901 42 1 6.6788 -3.5027 -1.0218 43 1 6.9870 -2.9296 -2.6790 44 1 4.5323 -3.2302 -2.1590 45 1 4.9561 -1.5646 -2.6351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:59 Heat of formation + Delta-G solvation = -2.642328 kcal Electronic energy + Delta-G solvation = -25831.688513 eV Core-core repulsion = 22361.525122 eV Total energy + Delta-G solvation = -3470.163392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21177 -38.60015 -37.37506 -34.43815 -34.24950 -32.37773 -31.02677 -29.74534 -27.98477 -27.29989 -25.57401 -24.67303 -23.16533 -22.49461 -21.99914 -21.01993 -19.47263 -18.06970 -17.53468 -16.67922 -16.32570 -16.18667 -15.06597 -14.88503 -14.73832 -14.44034 -14.24995 -13.88276 -13.80047 -13.70033 -13.48356 -13.32149 -12.89353 -12.73244 -12.33542 -12.31094 -12.14626 -11.84698 -11.58745 -11.30508 -11.19157 -11.10766 -11.00824 -10.95043 -10.76491 -10.71704 -10.62229 -10.33289 -9.95939 -9.84972 -9.66065 -8.79641 -8.54314 -8.50549 -8.45766 -7.29095 -6.08928 -4.18292 0.67925 1.25016 1.85553 2.43615 2.85511 3.21653 3.23883 3.31109 3.33794 4.35973 4.52505 4.61550 4.74893 4.88041 4.99386 5.02223 5.21430 5.25265 5.33730 5.38083 5.45638 5.47105 5.51940 5.60567 5.64957 5.72015 5.81195 5.84272 5.89904 5.94285 5.98857 6.07586 6.10516 6.24425 6.31199 6.39934 6.58382 6.67455 6.70021 7.16305 7.45768 7.50042 7.83198 7.92122 8.15600 8.20519 8.22096 8.91414 9.49167 10.96282 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003774 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.719742 B = 7418.360424 C = 8107.882613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C -0.141 4.141 4 C -0.052 4.052 5 C -0.132 4.132 6 C -0.251 4.251 7 S 0.223 5.777 8 C -0.245 4.245 9 C 0.590 3.410 10 O -0.537 6.537 11 N -0.592 5.592 12 C 0.110 3.890 13 C 0.053 3.947 14 N -0.540 5.540 15 C 0.188 3.812 16 C -0.552 4.552 17 H 0.056 0.944 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.048 3.952 25 C 0.115 3.885 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.554 7.052 4.576 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 C -0.199 4.199 4 C -0.066 4.066 5 C -0.164 4.164 6 C -0.388 4.388 7 S 0.492 5.508 8 C -0.366 4.366 9 C 0.376 3.624 10 O -0.416 6.416 11 N -0.325 5.325 12 C -0.013 4.013 13 C -0.077 4.077 14 N -0.264 5.264 15 C 0.062 3.938 16 C -0.591 4.591 17 H 0.074 0.926 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.081 4.081 25 C -0.007 4.007 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.807 5.792 4.647 20.220 hybrid contribution -0.226 -0.219 0.944 0.995 sum -19.033 5.574 5.591 20.605 Atomic orbital electron populations 1.21807 0.94042 1.02153 1.01832 1.19856 0.96006 0.95869 0.94254 1.21823 1.01648 0.94532 1.01891 1.19233 0.96882 0.94567 0.95891 1.19699 1.03467 1.02411 0.90828 1.25200 1.06189 1.02965 1.04441 1.83403 1.42219 1.30652 0.94563 1.24391 1.08992 1.04869 0.98346 1.17032 0.80233 0.82613 0.82561 1.90811 1.60835 1.26352 1.63571 1.48123 1.24968 1.36644 1.22715 1.22136 0.92731 0.89290 0.97122 1.22307 0.91917 1.01156 0.92297 1.62495 1.08035 1.34660 1.21213 1.19771 0.80668 0.96757 0.96563 1.21730 0.92113 1.25516 1.19754 0.92556 1.24947 0.96502 0.95958 0.96210 1.69936 0.99948 1.42363 1.40518 0.86661 0.77912 0.81654 0.82218 1.20601 1.21063 1.19933 1.22275 0.91627 0.93464 1.00751 1.21892 0.94968 1.00055 0.83760 0.92444 0.92210 0.92447 0.90526 0.92168 0.92178 0.92427 0.84219 0.81623 0.90931 0.90462 0.93542 0.90115 0.95429 0.94421 0.92739 0.94160 0.90249 0.89354 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.99 37.15 0.33 -0.91 16 2 C -0.04 -0.41 3.12 -91.77 -0.29 -0.70 16 3 C -0.14 -1.24 9.08 37.16 0.34 -0.91 16 4 C -0.05 -0.61 4.72 -105.48 -0.50 -1.10 16 5 C -0.13 -1.31 9.16 -41.41 -0.38 -1.69 16 6 C -0.25 -2.44 10.92 29.18 0.32 -2.12 16 7 S 0.22 2.70 23.06 -107.50 -2.48 0.23 16 8 C -0.25 -3.43 4.21 -36.79 -0.15 -3.59 16 9 C 0.59 9.82 6.43 -12.89 -0.08 9.74 16 10 O -0.54 -10.58 16.56 5.19 0.09 -10.49 16 11 N -0.59 -9.45 3.00 -173.75 -0.52 -9.97 16 12 C 0.11 1.64 6.50 -3.36 -0.02 1.62 16 13 C 0.05 0.97 5.03 -3.46 -0.02 0.95 16 14 N -0.54 -10.93 4.83 -235.48 -1.14 -12.06 16 15 C 0.19 4.63 5.19 -4.98 -0.03 4.60 16 16 C -0.55 -14.74 7.80 -34.44 -0.27 -15.01 16 17 H 0.06 1.51 5.91 -52.49 -0.31 1.20 16 18 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.05 0.90 5.35 -3.70 -0.02 0.88 16 25 C 0.12 1.85 6.61 -3.61 -0.02 1.83 16 26 H 0.06 0.43 7.53 -51.93 -0.39 0.04 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.95 7.13 -51.93 -0.37 0.58 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.44 7.99 -51.93 -0.41 0.03 16 33 H 0.14 1.08 7.70 -52.49 -0.40 0.68 16 34 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.05 6.44 -51.92 -0.33 0.72 16 37 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 38 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 39 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.04 0.85 7.39 -51.93 -0.38 0.46 16 43 H 0.08 1.44 7.96 -51.93 -0.41 1.03 16 44 H 0.09 1.43 7.04 -51.93 -0.37 1.07 16 45 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -30.44 371.08 -10.70 -41.14 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.07 Total: -1.06 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.89 Total: -4.67 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.92 Total: -46.88 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.48 Total: 0.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.44 -10.70 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.502 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds