Wall clock time and date at job start Tue Mar 31 2020 13:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.46679 * 2 1 4 4 C 1.50694 * 109.47439 * 119.99659 * 2 1 3 5 5 C 1.37469 * 123.35490 * 304.69062 * 4 2 1 6 6 C 1.33820 * 115.09930 * 180.02562 * 5 4 2 7 7 S 1.70607 * 110.95718 * 0.02562 * 6 5 4 8 8 C 1.36649 * 123.34778 * 124.70862 * 4 2 1 9 9 C 1.46584 * 125.46009 * 0.24953 * 8 4 2 10 10 O 1.21701 * 120.00038 * 265.35630 * 9 8 4 11 11 N 1.34777 * 119.99841 * 85.35508 * 9 8 4 12 12 C 1.47076 * 120.88557 * 5.31362 * 11 9 8 13 13 C 1.53703 * 108.27701 * 128.75336 * 12 11 9 14 14 N 1.46893 * 109.25496 * 54.08683 * 13 12 11 15 15 C 1.46901 * 111.00064 * 172.60680 * 14 13 12 16 16 C 1.50694 * 109.46898 * 51.90614 * 15 14 13 17 17 H 1.07998 * 120.00536 * 5.60963 * 16 15 14 18 18 C 1.37887 * 119.99855 * 185.60554 * 16 15 14 19 19 N 1.31514 * 119.99891 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47251 * 90.00288 * 20 18 16 22 22 H 1.48507 * 109.46625 * 209.99732 * 20 18 16 23 23 H 1.48497 * 109.47559 * 329.99479 * 20 18 16 24 24 C 1.46901 * 111.26821 * 296.75810 * 14 13 12 25 25 C 1.47077 * 120.87990 * 185.59337 * 11 9 8 26 26 H 1.09003 * 109.47654 * 299.99546 * 1 2 3 27 27 H 1.08994 * 109.47478 * 59.99811 * 1 2 3 28 28 H 1.09004 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47105 * 240.00733 * 2 1 3 30 30 H 1.09000 * 109.46947 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46820 * 300.00199 * 3 2 1 32 32 H 1.08995 * 109.46753 * 60.00518 * 3 2 1 33 33 H 1.07996 * 122.45067 * 0.04424 * 5 4 2 34 34 H 1.08004 * 124.51573 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.63079 * 248.52450 * 12 11 9 36 36 H 1.09009 * 109.62591 * 9.10486 * 12 11 9 37 37 H 1.08994 * 109.64644 * 294.08252 * 13 12 11 38 38 H 1.08997 * 109.41498 * 173.95112 * 13 12 11 39 39 H 1.08998 * 109.46862 * 171.90960 * 15 14 13 40 40 H 1.09002 * 109.46978 * 291.90615 * 15 14 13 41 41 H 0.96999 * 119.99889 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.49225 * 303.13748 * 24 14 13 43 43 H 1.09001 * 109.49203 * 183.06424 * 24 14 13 44 44 H 1.09003 * 109.63122 * 350.89738 * 25 11 9 45 45 H 1.09007 * 109.63217 * 111.47548 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6682 -0.3578 2.5083 6 6 2.2132 -1.1003 3.4791 7 16 3.2323 -2.3036 2.8278 8 6 2.8956 -1.7687 1.1870 9 6 3.4566 -2.3590 -0.0318 10 8 2.9184 -3.3224 -0.5449 11 7 4.5686 -1.8347 -0.5843 12 6 5.3005 -0.7459 0.0804 13 6 6.7824 -1.1445 0.1682 14 7 7.2707 -1.4924 -1.1728 15 6 8.7235 -1.7101 -1.1639 16 6 9.0770 -2.6958 -0.0803 17 1 8.2947 -3.1868 0.4794 18 6 10.3994 -2.9710 0.1967 19 7 11.3522 -2.3736 -0.4852 20 14 10.8376 -4.1934 1.5394 21 1 10.9344 -5.5557 0.9563 22 1 12.1421 -3.8194 2.1427 23 1 9.7850 -4.1768 2.5868 24 6 6.5660 -2.6643 -1.7092 25 6 5.0788 -2.3322 -1.8709 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.9915 0.4584 2.7137 34 1 2.0321 -0.9568 4.5341 35 1 5.1987 0.1713 -0.4997 36 1 4.9006 -0.5946 1.0831 37 1 6.8921 -2.0040 0.8295 38 1 7.3602 -0.3075 0.5600 39 1 9.0376 -2.1043 -2.1304 40 1 9.2315 -0.7644 -0.9748 41 1 12.2825 -2.5668 -0.2901 42 1 6.6788 -3.5027 -1.0218 43 1 6.9870 -2.9296 -2.6790 44 1 4.5323 -3.2302 -2.1590 45 1 4.9561 -1.5646 -2.6351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:58 Heat of formation + Delta-G solvation = -20.869354 kcal Electronic energy + Delta-G solvation = -25832.478896 eV Core-core repulsion = 22361.525122 eV Total energy + Delta-G solvation = -3470.953775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44963 -39.65813 -38.82968 -36.06240 -35.00485 -34.35039 -32.39990 -30.89971 -29.62065 -27.96656 -27.25004 -25.78192 -24.61441 -24.11240 -22.79733 -22.41892 -20.84127 -19.30695 -18.60216 -18.22320 -17.83517 -17.27559 -16.77414 -16.24285 -16.05547 -15.90451 -15.53015 -15.19664 -15.02514 -14.63324 -14.55733 -14.48921 -14.30941 -13.82552 -13.63979 -13.40710 -13.28239 -13.01741 -12.94299 -12.89641 -12.59114 -12.48217 -12.35531 -12.25087 -12.08694 -11.99784 -11.80902 -11.72478 -11.66178 -11.59402 -11.17595 -10.63331 -9.86045 -9.70585 -9.43316 -9.08784 -8.18927 -6.37551 -0.20971 0.27227 1.01254 1.33608 1.35238 1.44745 1.58589 1.66882 1.97746 2.34484 3.06606 3.25876 3.42813 3.83197 3.91078 3.98547 4.04612 4.22464 4.28444 4.30825 4.31275 4.45141 4.48109 4.56652 4.62792 4.70479 4.80501 4.84613 4.85065 4.99537 5.01223 5.07253 5.11936 5.15807 5.18565 5.26285 5.31492 5.38251 5.42289 5.45650 5.52075 5.71575 5.96792 6.13441 6.28503 6.41440 6.82047 6.92186 7.33879 8.83768 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003774 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.719742 B = 7418.360424 C = 8107.882613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 C -0.137 4.137 4 C -0.035 4.035 5 C -0.138 4.138 6 C -0.225 4.225 7 S 0.191 5.809 8 C -0.288 4.288 9 C 0.593 3.407 10 O -0.577 6.577 11 N -0.595 5.595 12 C 0.126 3.874 13 C 0.055 3.945 14 N -0.533 5.533 15 C 0.201 3.799 16 C -0.558 4.558 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.922 5.922 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.053 3.947 25 C 0.124 3.876 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.020 0.980 38 H 0.081 0.919 39 H 0.006 0.994 40 H 0.016 0.984 41 H 0.266 0.734 42 H 0.011 0.989 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 8.664 6.279 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.194 4.194 4 C -0.050 4.050 5 C -0.168 4.168 6 C -0.362 4.362 7 S 0.460 5.540 8 C -0.408 4.408 9 C 0.381 3.619 10 O -0.459 6.459 11 N -0.326 5.326 12 C 0.003 3.997 13 C -0.075 4.075 14 N -0.256 5.256 15 C 0.074 3.926 16 C -0.597 4.597 17 H 0.068 0.932 18 C -0.182 4.182 19 N -0.561 5.561 20 Si 0.776 3.224 21 H -0.203 1.203 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.076 4.076 25 C 0.002 3.998 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.189 0.811 34 H 0.215 0.785 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.099 0.901 39 H 0.025 0.975 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.826 7.419 6.356 23.004 hybrid contribution 0.341 -0.686 0.416 0.872 sum -20.485 6.733 6.772 22.602 Atomic orbital electron populations 1.21789 0.92625 1.01605 1.03432 1.19925 0.97148 0.96591 0.92655 1.21800 1.01048 0.93293 1.03298 1.19574 0.94999 0.93175 0.97288 1.19970 1.03903 1.03261 0.89692 1.25567 1.03890 1.00789 1.05943 1.83519 1.43830 1.32439 0.94209 1.24181 1.11740 1.07054 0.97785 1.17395 0.79769 0.81809 0.82964 1.90772 1.62006 1.28147 1.64929 1.48204 1.25093 1.36756 1.22587 1.22052 0.89767 0.89350 0.98533 1.22324 0.94515 1.00056 0.90563 1.62434 1.05746 1.35033 1.22437 1.19442 0.83305 0.94973 0.94850 1.21937 0.92142 1.25637 1.19988 0.93161 1.25716 0.96497 0.97664 0.98367 1.70038 1.00323 1.43740 1.41998 0.85672 0.77848 0.79310 0.79587 1.20307 1.20248 1.19449 1.22258 0.93497 0.91889 0.99966 1.21774 0.92572 1.00811 0.84664 0.90462 0.91040 0.94050 0.93126 0.93077 0.91155 0.90686 0.81108 0.78458 0.88945 0.88729 0.96189 0.90068 0.97538 0.96574 0.92506 0.97049 0.89955 0.89567 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.99 71.98 0.65 -1.43 16 2 C -0.04 -0.80 3.12 -11.54 -0.04 -0.84 16 3 C -0.14 -1.98 9.08 71.99 0.65 -1.33 16 4 C -0.04 -0.75 4.72 -20.42 -0.10 -0.85 16 5 C -0.14 -2.21 9.16 21.08 0.19 -2.02 16 6 C -0.22 -3.60 10.92 66.82 0.73 -2.87 16 7 S 0.19 4.44 23.06 -56.49 -1.30 3.14 16 8 C -0.29 -7.83 4.21 24.08 0.10 -7.73 16 9 C 0.59 19.91 6.43 86.42 0.56 20.47 16 10 O -0.58 -23.39 16.56 -4.35 -0.07 -23.46 16 11 N -0.59 -18.95 3.00 -821.84 -2.47 -21.42 16 12 C 0.13 3.62 6.50 86.51 0.56 4.19 16 13 C 0.05 2.03 5.03 86.54 0.43 2.47 16 14 N -0.53 -21.99 4.83 -898.91 -4.34 -26.33 16 15 C 0.20 10.25 5.19 85.55 0.44 10.69 16 16 C -0.56 -30.56 7.80 25.60 0.20 -30.36 16 17 H 0.05 2.78 5.91 -2.91 -0.02 2.76 16 18 C 0.02 0.98 5.46 84.66 0.46 1.44 16 19 N -0.92 -53.89 13.29 21.45 0.28 -53.60 16 20 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.05 2.05 5.35 86.38 0.46 2.51 16 25 C 0.12 4.00 6.61 86.35 0.57 4.57 16 26 H 0.08 0.86 7.53 -2.39 -0.02 0.84 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.05 1.22 7.13 -2.39 -0.02 1.21 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.83 7.99 -2.39 -0.02 0.82 16 33 H 0.17 1.71 7.70 -2.91 -0.02 1.69 16 34 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 2.45 6.44 -2.38 -0.02 2.44 16 37 H 0.02 0.85 6.43 -2.39 -0.02 0.83 16 38 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 39 H 0.01 0.35 7.92 -2.39 -0.02 0.34 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.01 0.49 7.39 -2.39 -0.02 0.48 16 43 H 0.08 3.08 7.96 -2.39 -0.02 3.06 16 44 H 0.09 2.85 7.04 -2.39 -0.02 2.84 16 45 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -67.77 371.08 0.99 -66.78 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.97 Total: 10.15 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.88 Total: -1.09 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -6.52 Total: -101.36 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.46 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.30 Total: 3.14 kcal Total: -67.77 0.99 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.910 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds