Wall clock time and date at job start Tue Mar 31 2020 13:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47302 * 2 1 4 4 C 1.53007 * 109.47246 * 120.00180 * 2 1 3 5 5 C 1.52994 * 109.47024 * 62.81660 * 4 2 1 6 6 N 1.46502 * 109.47163 * 174.66680 * 5 4 2 7 7 C 1.46494 * 120.00173 * 267.02404 * 6 5 4 8 8 C 1.50700 * 109.46881 * 275.31561 * 7 6 5 9 9 H 1.08001 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99784 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00169 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99942 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47260 * 59.99619 * 12 10 8 14 14 H 1.48500 * 109.47133 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47199 * 299.99737 * 12 10 8 16 16 C 1.34783 * 119.99919 * 87.01737 * 6 5 4 17 17 O 1.21687 * 119.99837 * 4.73599 * 16 6 5 18 18 C 1.46678 * 119.99833 * 184.72950 * 16 6 5 19 19 C 1.35655 * 126.13375 * 334.26727 * 18 16 6 20 20 N 1.30943 * 114.19563 * 179.97438 * 19 18 16 21 21 C 1.29428 * 117.35977 * 0.02562 * 20 19 18 22 22 C 1.50703 * 124.80190 * 179.97438 * 21 20 19 23 23 C 1.52993 * 117.50048 * 8.65042 * 22 21 20 24 24 C 1.52997 * 117.49958 * 300.02345 * 22 21 20 25 25 S 1.70954 * 110.39501 * 0.02562 * 21 20 19 26 26 H 1.08997 * 109.47440 * 54.72580 * 1 2 3 27 27 H 1.09002 * 109.47294 * 174.71991 * 1 2 3 28 28 H 1.09001 * 109.47554 * 294.72023 * 1 2 3 29 29 H 1.09007 * 109.47471 * 240.00181 * 2 1 3 30 30 H 1.08996 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47047 * 300.00482 * 3 2 1 32 32 H 1.09007 * 109.46710 * 59.99715 * 3 2 1 33 33 H 1.09001 * 109.46784 * 302.81513 * 4 2 1 34 34 H 1.09000 * 109.46723 * 182.81445 * 4 2 1 35 35 H 1.09001 * 109.47436 * 54.66739 * 5 4 2 36 36 H 1.09005 * 109.47059 * 294.66699 * 5 4 2 37 37 H 1.09005 * 109.47028 * 35.31414 * 7 6 5 38 38 H 1.08998 * 109.47286 * 155.31573 * 7 6 5 39 39 H 0.97002 * 120.00345 * 180.02562 * 11 10 8 40 40 H 1.08004 * 122.90530 * 0.02562 * 19 18 16 41 41 H 1.09001 * 115.54492 * 154.35765 * 22 21 20 42 42 H 1.09001 * 117.50156 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.50168 * 145.02639 * 23 22 21 44 44 H 1.09007 * 117.49702 * 214.98339 * 24 22 21 45 45 H 1.09002 * 117.49866 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5887 -2.1828 1.2143 6 7 2.1820 -2.9042 2.3429 7 6 3.4526 -3.6131 2.1726 8 6 3.1901 -4.9866 1.6107 9 1 2.1780 -5.3002 1.4017 10 6 4.2421 -5.8432 1.3643 11 7 5.4745 -5.4616 1.6193 12 14 3.9167 -7.5459 0.6684 13 1 3.2393 -7.4219 -0.6473 14 1 5.2047 -8.2645 0.4957 15 1 3.0474 -8.3048 1.6031 16 6 1.5588 -2.9156 3.5380 17 8 0.4628 -2.4006 3.6575 18 6 2.2017 -3.5490 4.6942 19 6 3.1222 -4.5445 4.6518 20 7 3.5432 -4.9367 5.8281 21 6 3.0449 -4.3451 6.8658 22 6 3.4078 -4.6622 8.2937 23 6 4.5811 -5.6154 8.5294 24 6 3.1487 -6.0865 8.7888 25 16 1.9157 -3.1539 6.3876 26 1 -0.3634 0.5934 -0.8389 27 1 -0.3634 -1.0233 -0.0946 28 1 -0.3634 0.4297 0.9335 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6360 -0.2374 2.1385 34 1 3.1288 -0.6778 1.2748 35 1 1.9125 -2.6408 0.2797 36 1 0.5019 -2.2292 1.2842 37 1 4.0906 -3.0557 1.4867 38 1 3.9499 -3.7046 3.1382 39 1 6.2146 -6.0641 1.4456 40 1 3.4779 -4.9758 3.7277 41 1 3.2688 -3.8488 9.0058 42 1 5.0904 -6.0134 7.6517 43 1 5.2144 -5.4292 9.3967 44 1 2.8397 -6.2102 9.8268 45 1 2.7154 -6.7941 8.0818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609175649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:56 Heat of formation + Delta-G solvation = 28.892536 kcal Electronic energy + Delta-G solvation = -25191.557257 eV Core-core repulsion = 21722.761320 eV Total energy + Delta-G solvation = -3468.795937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90839 -38.78545 -36.78307 -36.45791 -34.88955 -32.71476 -30.66768 -28.59756 -27.33997 -27.01755 -25.97014 -23.30803 -23.19496 -22.37527 -22.10488 -20.18610 -19.72727 -18.44674 -17.52336 -16.68967 -16.13794 -15.71918 -15.22816 -15.01251 -14.78770 -14.55960 -14.14424 -13.89824 -13.82619 -13.41845 -13.16116 -12.91758 -12.47283 -12.36187 -12.16473 -12.10171 -11.63963 -11.54784 -11.44754 -11.12381 -10.97586 -10.94518 -10.78608 -10.74206 -10.59416 -10.51634 -10.37610 -10.27049 -10.04813 -9.82434 -9.55565 -9.06127 -8.94087 -8.70424 -8.21393 -7.79834 -6.29936 -4.40466 0.78276 1.58287 2.11469 3.02501 3.20702 3.25960 3.28802 3.74847 3.90130 3.95151 4.25836 4.36633 4.84467 4.86524 4.99364 5.03177 5.03879 5.12192 5.12803 5.35461 5.61374 5.65834 5.70835 5.72289 5.76548 5.82192 5.88059 5.96724 5.99542 6.02663 6.05951 6.10359 6.24178 6.25485 6.32206 6.38511 6.59191 6.64906 6.68530 6.96897 7.08716 7.42785 7.64683 7.89540 8.17070 8.21017 8.66264 8.87419 9.28296 10.74674 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.004921 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.254136 B = 5688.024498 C = 8067.289642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.123 3.877 6 N -0.580 5.580 7 C 0.213 3.787 8 C -0.550 4.550 9 H 0.065 0.935 10 C 0.070 3.930 11 N -0.880 5.880 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.592 3.408 17 O -0.569 6.569 18 C -0.286 4.286 19 C 0.091 3.909 20 N -0.474 5.474 21 C 0.063 3.937 22 C -0.095 4.095 23 C -0.150 4.150 24 C -0.157 4.157 25 S 0.168 5.832 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.270 0.730 40 H 0.238 0.762 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 5.809 7.160 9.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.001 4.001 6 N -0.309 5.309 7 C 0.093 3.907 8 C -0.588 4.588 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.517 5.517 12 Si 0.724 3.276 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.379 3.621 17 O -0.451 6.451 18 C -0.409 4.409 19 C -0.063 4.063 20 N -0.188 5.188 21 C -0.212 4.212 22 C -0.117 4.117 23 C -0.189 4.189 24 C -0.196 4.196 25 S 0.426 5.574 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.254 0.746 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.849 6.355 7.809 10.779 hybrid contribution 0.342 -1.325 -1.300 1.888 sum -3.507 5.030 6.509 8.942 Atomic orbital electron populations 1.21875 0.95362 1.01900 1.01338 1.21054 0.95834 0.95922 0.98441 1.21822 1.00922 0.96177 1.01285 1.22013 1.01121 0.95907 0.97679 1.21396 0.98629 0.90625 0.89403 1.47971 1.24672 1.49761 1.08470 1.20097 0.79738 0.91600 0.99247 1.21439 0.93979 0.98755 1.44646 0.91682 1.24981 0.94783 0.98950 0.94807 1.69910 0.98583 1.36906 1.46256 0.86541 0.77770 0.83438 0.79803 1.19965 1.20922 1.19831 1.16727 0.84266 0.78977 0.82119 1.90725 1.20124 1.49138 1.85122 1.25656 1.09548 1.08557 0.97179 1.24250 0.91443 0.92983 0.97635 1.66231 1.26576 1.28073 0.97964 1.26470 0.98418 0.98106 0.98185 1.20467 1.06715 0.95153 0.89342 1.23013 0.90826 1.01184 1.03827 1.23035 0.99827 0.94860 1.01926 1.83556 1.39201 1.35951 0.98737 0.93235 0.92350 0.92696 0.91071 0.92773 0.93018 0.92921 0.91996 0.91748 0.90023 0.90710 0.94410 0.92583 0.92032 0.74644 0.85781 0.87076 0.88286 0.88106 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.76 37.15 0.33 -1.51 16 2 C -0.09 -1.22 2.94 -90.62 -0.27 -1.49 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.13 -2.05 5.02 -26.73 -0.13 -2.19 16 5 C 0.12 2.27 5.00 -4.04 -0.02 2.25 16 6 N -0.58 -12.43 2.46 -176.61 -0.43 -12.87 16 7 C 0.21 4.98 4.66 -5.20 -0.02 4.96 16 8 C -0.55 -13.81 7.67 -34.44 -0.26 -14.07 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.78 5.27 -17.82 -0.09 1.69 16 11 N -0.88 -23.28 13.29 55.43 0.74 -22.55 16 12 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 16 C 0.59 13.17 7.61 -12.85 -0.10 13.07 16 17 O -0.57 -13.34 16.66 5.20 0.09 -13.26 16 18 C -0.29 -6.02 6.12 -37.10 -0.23 -6.25 16 19 C 0.09 1.99 9.13 -18.85 -0.17 1.81 16 20 N -0.47 -9.48 9.98 -11.50 -0.11 -9.59 16 21 C 0.06 1.05 6.96 -13.29 -0.09 0.96 16 22 C -0.09 -1.19 6.28 -91.78 -0.58 -1.77 16 23 C -0.15 -1.73 10.12 -26.73 -0.27 -2.00 16 24 C -0.16 -1.73 10.23 -26.73 -0.27 -2.01 16 25 S 0.17 2.86 23.11 -107.50 -2.48 0.37 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.75 6.90 -51.93 -0.36 0.40 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 36 H 0.07 1.40 6.21 -51.93 -0.32 1.07 16 37 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.06 1.38 4.29 -51.93 -0.22 1.15 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.24 5.75 3.61 -52.48 -0.19 5.56 16 41 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.11 1.54 7.84 -51.93 -0.41 1.14 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -28.19 380.18 -10.31 -38.50 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.96 Total: 6.41 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.85 Total: -7.86 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.19 Total: -45.01 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.48 Total: 0.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.19 -10.31 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609175649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.389 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds