Wall clock time and date at job start Tue Mar 31 2020 13:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47076 * 2 1 4 4 S 1.70613 * 124.52341 * 269.69393 * 3 2 1 5 5 C 1.75832 * 91.56435 * 179.97438 * 4 3 2 6 6 C 1.46585 * 125.45679 * 180.09402 * 5 4 3 7 7 O 1.21704 * 119.99677 * 180.23139 * 6 5 4 8 8 N 1.34778 * 120.00083 * 0.22992 * 6 5 4 9 9 C 1.46506 * 119.99940 * 179.97438 * 8 6 5 10 10 C 1.53039 * 109.45986 * 275.07370 * 9 8 6 11 11 C 1.53188 * 109.31095 * 178.61801 * 10 9 8 12 12 N 1.46927 * 108.77977 * 54.62931 * 11 10 9 13 13 C 1.36935 * 120.62780 * 126.41662 * 12 11 10 14 14 H 1.08001 * 120.00176 * 331.82194 * 13 12 11 15 15 C 1.38819 * 119.99891 * 151.83219 * 13 12 11 16 16 N 1.31615 * 119.99565 * 343.06337 * 15 13 12 17 17 Si 1.86793 * 119.99843 * 163.06609 * 15 13 12 18 18 H 1.48497 * 109.47508 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47018 * 120.00098 * 17 15 13 20 20 H 1.48501 * 109.46979 * 239.99559 * 17 15 13 21 21 C 1.46921 * 118.73693 * 306.39465 * 12 11 10 22 22 C 1.53034 * 109.46023 * 155.00034 * 9 8 6 23 23 C 1.36642 * 109.08204 * 0.29481 * 5 4 3 24 24 C 1.33822 * 124.52423 * 89.99587 * 3 2 1 25 25 C 1.50696 * 122.44781 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.46724 * 60.00352 * 1 2 3 27 27 H 1.08997 * 109.46617 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47455 * 300.00215 * 1 2 3 29 29 H 1.09001 * 109.46724 * 119.99648 * 2 1 3 30 30 H 1.08995 * 109.47455 * 239.99785 * 2 1 3 31 31 H 0.97000 * 120.00134 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.45768 * 35.02755 * 9 8 6 33 33 H 1.09002 * 109.49669 * 298.56589 * 10 9 8 34 34 H 1.08996 * 109.50248 * 58.66101 * 10 9 8 35 35 H 1.09006 * 109.58381 * 294.84292 * 11 10 9 36 36 H 1.09005 * 109.70389 * 174.49280 * 11 10 9 37 37 H 0.97002 * 119.99881 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.58993 * 293.81586 * 21 12 11 39 39 H 1.09000 * 109.70182 * 173.46626 * 21 12 11 40 40 H 1.08997 * 109.49985 * 301.34210 * 22 9 8 41 41 H 1.09007 * 109.49743 * 61.40188 * 22 9 8 42 42 H 1.08004 * 123.35139 * 179.75874 * 23 5 4 43 43 H 1.08997 * 109.47875 * 89.99616 * 25 24 3 44 44 H 1.09005 * 109.47343 * 210.00143 * 25 24 3 45 45 H 1.09007 * 109.47345 * 329.99288 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3617 2.3299 -1.4056 5 6 2.8480 3.7229 -0.4491 6 6 3.3028 5.0078 -0.9883 7 8 3.6205 5.9068 -0.2320 8 7 3.3692 5.1935 -2.3216 9 6 3.8233 6.4780 -2.8605 10 6 2.6417 7.4480 -2.9302 11 6 3.1271 8.8003 -3.4615 12 7 3.8092 8.5869 -4.7452 13 6 3.4338 9.2883 -5.8598 14 1 2.4168 9.6373 -5.9611 15 6 4.3605 9.5507 -6.8595 16 7 5.6476 9.4331 -6.6110 17 14 3.7807 10.0706 -8.5573 18 1 2.2969 10.1273 -8.5779 19 1 4.3322 11.4112 -8.8798 20 1 4.2520 9.0862 -9.5643 21 6 4.9019 7.6070 -4.8102 22 6 4.3967 6.2680 -4.2637 23 6 2.7381 3.4141 0.8775 24 6 2.2851 2.1359 1.1025 25 6 2.0880 1.5803 2.4894 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1157 4.4771 -2.9243 32 1 4.5948 6.8918 -2.2111 33 1 1.8803 7.0465 -3.5989 34 1 2.2192 7.5790 -1.9340 35 1 3.8212 9.2453 -2.7485 36 1 2.2756 9.4654 -3.6062 37 1 6.2952 9.6160 -7.3096 38 1 5.7409 7.9546 -4.2071 39 1 5.2225 7.4820 -5.8444 40 1 5.2232 5.5590 -4.2167 41 1 3.6189 5.8770 -4.9198 42 1 2.9830 4.1054 1.6703 43 1 3.0091 1.1034 2.8242 44 1 1.8292 2.3900 3.1718 45 1 1.2827 0.8457 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609330617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:42 Heat of formation + Delta-G solvation = -3.939457 kcal Electronic energy + Delta-G solvation = -24568.995562 eV Core-core repulsion = 21098.775923 eV Total energy + Delta-G solvation = -3470.219639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.85707 -38.74646 -37.25200 -34.43944 -34.08245 -32.19610 -30.72792 -30.08224 -29.37977 -27.71679 -25.60005 -24.30332 -22.76290 -22.25623 -21.77292 -20.45452 -19.51785 -18.71474 -17.96224 -16.92592 -16.27543 -15.79072 -15.11137 -14.92345 -14.66267 -14.53498 -14.34306 -13.89544 -13.65497 -13.53137 -13.40085 -12.99818 -12.93290 -12.69096 -12.51847 -12.44093 -12.32963 -11.90610 -11.67414 -11.47988 -11.46056 -11.13296 -11.01011 -10.86774 -10.73677 -10.48840 -10.27950 -10.04651 -9.96943 -9.74235 -9.52111 -8.91710 -8.73427 -8.56703 -8.45679 -6.68653 -5.79705 -3.21909 0.34987 1.26700 1.68956 2.17323 3.26145 3.28911 3.37205 3.44884 3.47223 4.32017 4.49475 4.60327 4.72163 4.85732 4.95010 5.02797 5.12295 5.32705 5.33270 5.38631 5.41238 5.43286 5.49404 5.54283 5.58056 5.61446 5.74213 5.80398 5.86691 6.06703 6.09693 6.23162 6.24892 6.31599 6.52349 6.56084 6.58138 6.79610 6.88429 6.99506 7.31128 7.56873 7.66988 7.80100 8.29331 8.44450 9.20604 9.83749 10.40927 11.29309 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027402 B = 0.002495 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.589870 B =11220.887138 C =11705.894093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.199 4.199 4 S 0.196 5.804 5 C -0.257 4.257 6 C 0.586 3.414 7 O -0.531 6.531 8 N -0.719 5.719 9 C 0.152 3.848 10 C -0.139 4.139 11 C 0.148 3.852 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.175 3.825 22 C -0.147 4.147 23 C -0.054 4.054 24 C -0.120 4.120 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.392 0.608 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 -21.151 14.022 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.319 4.319 4 S 0.465 5.535 5 C -0.378 4.378 6 C 0.371 3.629 7 O -0.409 6.409 8 N -0.368 5.368 9 C 0.049 3.951 10 C -0.180 4.180 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.381 4.381 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.048 3.952 22 C -0.187 4.187 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.152 4.152 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.226 0.774 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.170 0.830 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.758 -20.718 12.827 25.572 hybrid contribution -0.225 0.172 0.359 0.457 sum -7.982 -20.546 13.186 25.685 Atomic orbital electron populations 1.21796 0.94104 1.02084 1.02679 1.20123 0.96338 0.89451 1.03407 1.24026 1.08441 1.02080 0.97348 1.82976 1.60300 1.02590 1.07617 1.24666 1.15676 0.99428 0.98010 1.16976 0.77826 0.85388 0.82700 1.90828 1.49299 1.42735 1.58053 1.46256 1.67499 1.17293 1.05770 1.21108 0.96854 0.81649 0.95515 1.22387 0.97410 0.98035 1.00151 1.20874 0.95903 0.92836 0.88308 1.44103 1.39156 1.43498 1.04805 1.19236 0.93753 1.29580 0.95490 0.91585 1.25062 0.95056 0.99868 0.99748 1.70034 0.99675 1.52903 1.32151 0.86224 0.78179 0.77823 0.84561 1.20263 1.21720 1.21579 1.20738 0.89082 0.83922 1.01443 1.22553 1.00053 1.01960 0.94149 1.20612 0.96999 0.95735 0.95328 1.18651 1.04227 0.93973 0.96478 1.20510 1.02022 1.01026 0.91633 0.92302 0.91911 0.92183 0.89827 0.90676 0.77403 0.89743 0.92268 0.92639 0.96120 0.92479 0.93651 0.96040 0.88952 0.92653 0.92119 0.83049 0.91246 0.91323 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.48 16 2 C -0.05 -0.34 5.72 -27.88 -0.16 -0.50 16 3 C -0.20 -1.78 5.53 -35.86 -0.20 -1.98 16 4 S 0.20 1.93 22.10 -107.50 -2.38 -0.44 16 5 C -0.26 -3.36 6.45 -36.79 -0.24 -3.59 16 6 C 0.59 9.44 7.75 -12.89 -0.10 9.34 16 7 O -0.53 -10.39 16.50 5.19 0.09 -10.31 16 8 N -0.72 -10.96 5.07 -55.10 -0.28 -11.24 16 9 C 0.15 2.73 2.41 -67.89 -0.16 2.56 16 10 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 11 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 12 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 13 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 14 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 16 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 17 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.17 4.12 5.30 -3.72 -0.02 4.10 16 22 C -0.15 -2.74 5.55 -26.62 -0.15 -2.89 16 23 C -0.05 -0.64 9.79 -40.44 -0.40 -1.03 16 24 C -0.12 -1.16 5.78 -106.45 -0.62 -1.77 16 25 C -0.09 -0.64 9.55 36.00 0.34 -0.29 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.36 7.80 -51.93 -0.41 -0.05 16 29 H 0.08 0.44 7.25 -51.93 -0.38 0.07 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.39 5.05 7.72 -40.82 -0.31 4.74 16 32 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 2.41 6.07 -51.93 -0.31 2.10 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.15 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 45 H 0.07 0.38 6.86 -51.93 -0.36 0.02 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -31.48 374.18 -10.78 -42.26 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.19 Total: 1.63 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.73 Total: -3.18 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.17 Total: -52.15 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.48 -10.78 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.323 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds