Wall clock time and date at job start Tue Mar 31 2020 13:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47076 * 2 1 4 4 S 1.70613 * 124.52341 * 269.69393 * 3 2 1 5 5 C 1.75832 * 91.56435 * 179.97438 * 4 3 2 6 6 C 1.46585 * 125.45679 * 180.09402 * 5 4 3 7 7 O 1.21704 * 119.99677 * 180.23139 * 6 5 4 8 8 N 1.34778 * 120.00083 * 0.22992 * 6 5 4 9 9 C 1.46506 * 119.99940 * 179.97438 * 8 6 5 10 10 C 1.53039 * 109.45986 * 275.07370 * 9 8 6 11 11 C 1.53188 * 109.31095 * 178.61801 * 10 9 8 12 12 N 1.46927 * 108.77977 * 54.62931 * 11 10 9 13 13 C 1.36935 * 120.62780 * 126.41662 * 12 11 10 14 14 H 1.08001 * 120.00176 * 331.82194 * 13 12 11 15 15 C 1.38819 * 119.99891 * 151.83219 * 13 12 11 16 16 N 1.31615 * 119.99565 * 343.06337 * 15 13 12 17 17 Si 1.86793 * 119.99843 * 163.06609 * 15 13 12 18 18 H 1.48497 * 109.47508 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47018 * 120.00098 * 17 15 13 20 20 H 1.48501 * 109.46979 * 239.99559 * 17 15 13 21 21 C 1.46921 * 118.73693 * 306.39465 * 12 11 10 22 22 C 1.53034 * 109.46023 * 155.00034 * 9 8 6 23 23 C 1.36642 * 109.08204 * 0.29481 * 5 4 3 24 24 C 1.33822 * 124.52423 * 89.99587 * 3 2 1 25 25 C 1.50696 * 122.44781 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.46724 * 60.00352 * 1 2 3 27 27 H 1.08997 * 109.46617 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47455 * 300.00215 * 1 2 3 29 29 H 1.09001 * 109.46724 * 119.99648 * 2 1 3 30 30 H 1.08995 * 109.47455 * 239.99785 * 2 1 3 31 31 H 0.97000 * 120.00134 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.45768 * 35.02755 * 9 8 6 33 33 H 1.09002 * 109.49669 * 298.56589 * 10 9 8 34 34 H 1.08996 * 109.50248 * 58.66101 * 10 9 8 35 35 H 1.09006 * 109.58381 * 294.84292 * 11 10 9 36 36 H 1.09005 * 109.70389 * 174.49280 * 11 10 9 37 37 H 0.97002 * 119.99881 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.58993 * 293.81586 * 21 12 11 39 39 H 1.09000 * 109.70182 * 173.46626 * 21 12 11 40 40 H 1.08997 * 109.49985 * 301.34210 * 22 9 8 41 41 H 1.09007 * 109.49743 * 61.40188 * 22 9 8 42 42 H 1.08004 * 123.35139 * 179.75874 * 23 5 4 43 43 H 1.08997 * 109.47875 * 89.99616 * 25 24 3 44 44 H 1.09005 * 109.47343 * 210.00143 * 25 24 3 45 45 H 1.09007 * 109.47345 * 329.99288 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3617 2.3299 -1.4056 5 6 2.8480 3.7229 -0.4491 6 6 3.3028 5.0078 -0.9883 7 8 3.6205 5.9068 -0.2320 8 7 3.3692 5.1935 -2.3216 9 6 3.8233 6.4780 -2.8605 10 6 2.6417 7.4480 -2.9302 11 6 3.1271 8.8003 -3.4615 12 7 3.8092 8.5869 -4.7452 13 6 3.4338 9.2883 -5.8598 14 1 2.4168 9.6373 -5.9611 15 6 4.3605 9.5507 -6.8595 16 7 5.6476 9.4331 -6.6110 17 14 3.7807 10.0706 -8.5573 18 1 2.2969 10.1273 -8.5779 19 1 4.3322 11.4112 -8.8798 20 1 4.2520 9.0862 -9.5643 21 6 4.9019 7.6070 -4.8102 22 6 4.3967 6.2680 -4.2637 23 6 2.7381 3.4141 0.8775 24 6 2.2851 2.1359 1.1025 25 6 2.0880 1.5803 2.4894 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1157 4.4771 -2.9243 32 1 4.5948 6.8918 -2.2111 33 1 1.8803 7.0465 -3.5989 34 1 2.2192 7.5790 -1.9340 35 1 3.8212 9.2453 -2.7485 36 1 2.2756 9.4654 -3.6062 37 1 6.2952 9.6160 -7.3096 38 1 5.7409 7.9546 -4.2071 39 1 5.2225 7.4820 -5.8444 40 1 5.2232 5.5590 -4.2167 41 1 3.6189 5.8770 -4.9198 42 1 2.9830 4.1054 1.6703 43 1 3.0091 1.1034 2.8242 44 1 1.8292 2.3900 3.1718 45 1 1.2827 0.8457 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609330617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:41 Heat of formation + Delta-G solvation = -21.839291 kcal Electronic energy + Delta-G solvation = -24569.771757 eV Core-core repulsion = 21098.775923 eV Total energy + Delta-G solvation = -3470.995834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12270 -39.67262 -38.82575 -36.07308 -34.74703 -33.97623 -32.00576 -31.54093 -30.86339 -28.41452 -27.17181 -25.59540 -23.99422 -23.63879 -23.10413 -21.68777 -21.07954 -19.72140 -19.02223 -18.63691 -17.48101 -16.99436 -16.76731 -16.22801 -15.90608 -15.44399 -15.36457 -15.27800 -15.15452 -14.83945 -14.54977 -14.36108 -14.16700 -14.00265 -13.44769 -13.27003 -13.13797 -13.04097 -13.00602 -12.67331 -12.62156 -12.55697 -12.28837 -12.19878 -12.05875 -12.02069 -11.90071 -11.65324 -11.61406 -11.42484 -11.13277 -10.58254 -10.19529 -9.65276 -9.33744 -8.73003 -7.89050 -5.35004 -0.53621 0.44321 0.89046 1.31320 1.47352 1.49227 1.60158 2.02762 2.11783 2.51222 3.26998 3.60507 3.68160 3.73812 3.88051 3.99835 4.09974 4.19551 4.27392 4.40699 4.41621 4.45759 4.50974 4.60681 4.73167 4.79941 4.82375 4.85857 4.88232 4.98120 5.00831 5.02128 5.06454 5.10493 5.13495 5.25282 5.31507 5.40986 5.42272 5.44097 5.54718 5.63181 5.68555 6.37245 6.41200 7.06427 7.12948 7.81843 8.35316 9.18455 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027402 B = 0.002495 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.589870 B =11220.887138 C =11705.894093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.186 4.186 4 S 0.227 5.773 5 C -0.298 4.298 6 C 0.586 3.414 7 O -0.575 6.575 8 N -0.709 5.709 9 C 0.162 3.838 10 C -0.125 4.125 11 C 0.146 3.854 12 N -0.609 5.609 13 C -0.263 4.263 14 H 0.068 0.932 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.287 1.287 21 C 0.180 3.820 22 C -0.130 4.130 23 C -0.052 4.052 24 C -0.133 4.133 25 C -0.092 4.092 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.407 0.593 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.008 0.992 36 H 0.060 0.940 37 H 0.251 0.749 38 H -0.004 1.004 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 -24.095 14.143 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.306 4.306 4 S 0.498 5.502 5 C -0.418 4.418 6 C 0.374 3.626 7 O -0.457 6.457 8 N -0.359 5.359 9 C 0.058 3.942 10 C -0.165 4.165 11 C 0.019 3.981 12 N -0.332 5.332 13 C -0.393 4.393 14 H 0.086 0.914 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.191 1.191 19 H -0.221 1.221 20 H -0.214 1.214 21 C 0.053 3.947 22 C -0.169 4.169 23 C -0.086 4.086 24 C -0.145 4.145 25 C -0.150 4.150 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.243 0.757 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.161 0.839 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.556 -23.700 12.946 28.646 hybrid contribution 0.306 1.029 0.408 1.149 sum -9.250 -22.671 13.354 27.890 Atomic orbital electron populations 1.21800 0.93428 1.03133 1.02228 1.20299 0.96770 0.87621 1.04811 1.24504 1.06342 1.03108 0.96670 1.82794 1.59411 1.00754 1.07284 1.24389 1.18722 0.99538 0.99139 1.17363 0.76803 0.86103 0.82320 1.90797 1.51347 1.44600 1.58957 1.45962 1.67318 1.16572 1.06007 1.20742 0.95964 0.82797 0.94714 1.22185 0.97671 0.96411 1.00198 1.20953 0.95439 0.94750 0.86919 1.44354 1.39488 1.43951 1.05445 1.19550 0.93896 1.29473 0.96367 0.91441 1.25835 0.95102 1.00415 1.03190 1.70189 1.00718 1.54226 1.33034 0.85175 0.78158 0.76935 0.79962 1.19070 1.22103 1.21360 1.20554 0.88394 0.86108 0.99619 1.22283 1.01039 0.99343 0.94262 1.20791 0.96295 0.96684 0.94839 1.18850 1.04401 0.93118 0.98160 1.20573 1.03103 1.01441 0.89910 0.93061 0.90171 0.92375 0.88137 0.89598 0.75707 0.92041 0.91401 0.92254 0.97377 0.92178 0.93973 0.98626 0.91615 0.90445 0.91003 0.83850 0.90324 0.91205 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 71.98 0.71 -0.48 16 2 C -0.06 -0.50 5.72 29.85 0.17 -0.33 16 3 C -0.19 -2.83 5.53 24.68 0.14 -2.69 16 4 S 0.23 4.01 22.10 -56.49 -1.25 2.77 16 5 C -0.30 -7.56 6.45 24.08 0.16 -7.41 16 6 C 0.59 18.91 7.75 86.42 0.67 19.58 16 7 O -0.58 -23.18 16.50 -4.36 -0.07 -23.25 16 8 N -0.71 -21.08 5.07 -446.45 -2.26 -23.34 16 9 C 0.16 5.82 2.41 45.01 0.11 5.93 16 10 C -0.12 -4.65 5.65 30.67 0.17 -4.47 16 11 C 0.15 6.45 6.52 86.36 0.56 7.02 16 12 N -0.61 -31.16 2.99 -699.09 -2.09 -33.25 16 13 C -0.26 -14.53 9.58 84.04 0.81 -13.72 16 14 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 15 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 16 N -0.94 -55.42 11.19 21.65 0.24 -55.18 16 17 Si 0.97 44.66 29.59 68.60 2.03 46.69 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 C 0.18 8.70 5.30 86.36 0.46 9.15 16 22 C -0.13 -4.76 5.55 30.67 0.17 -4.59 16 23 C -0.05 -1.19 9.79 21.71 0.21 -0.98 16 24 C -0.13 -2.29 5.78 -21.05 -0.12 -2.41 16 25 C -0.09 -1.02 9.55 71.23 0.68 -0.34 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.51 7.80 -2.39 -0.02 0.49 16 29 H 0.10 0.64 7.25 -2.39 -0.02 0.62 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.41 9.78 7.72 -92.71 -0.72 9.06 16 32 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.06 2.58 7.93 -2.38 -0.02 2.56 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 39 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.77 8.13 -2.38 -0.02 0.75 16 45 H 0.08 0.65 6.86 -2.38 -0.02 0.64 16 Total: -1.00 -69.51 374.18 2.18 -67.34 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.27 Total: 16.35 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.31 Total: 1.87 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.11 Total: -111.77 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.25 Total: 2.77 kcal Total: -69.51 2.18 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.499 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds