Wall clock time and date at job start Tue Mar 31 2020 13:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47184 * 2 1 4 4 C 1.37482 * 122.44860 * 264.97709 * 3 2 1 5 5 C 1.36648 * 113.29414 * 180.02562 * 4 3 2 6 6 C 1.46585 * 125.45680 * 180.02562 * 5 4 3 7 7 O 1.21708 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00157 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99730 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.45772 * 154.99987 * 9 8 6 11 11 C 1.53184 * 109.31045 * 181.38140 * 10 9 8 12 12 N 1.46928 * 108.89946 * 305.29664 * 11 10 9 13 13 C 1.36937 * 120.62751 * 233.68087 * 12 11 10 14 14 H 1.07999 * 120.00448 * 27.38666 * 13 12 11 15 15 C 1.38820 * 119.99269 * 207.39032 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.25596 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.25602 * 15 13 12 18 18 H 1.48497 * 109.46957 * 60.00245 * 17 15 13 19 19 H 1.48494 * 109.47182 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47157 * 300.00224 * 17 15 13 21 21 C 1.47200 * 118.55359 * 53.53256 * 12 11 10 22 22 C 1.53036 * 109.45844 * 275.06605 * 9 8 6 23 23 S 1.75833 * 109.08558 * 0.26291 * 5 4 3 24 24 C 1.33816 * 122.45282 * 85.00160 * 3 2 1 25 25 C 1.50702 * 124.52012 * 359.94083 * 24 3 2 26 26 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46942 * 300.00018 * 1 2 3 28 28 H 1.09000 * 109.47378 * 59.99564 * 1 2 3 29 29 H 1.09001 * 109.47001 * 240.00367 * 2 1 3 30 30 H 1.08997 * 109.47356 * 119.99899 * 2 1 3 31 31 H 1.08002 * 123.35140 * 0.04291 * 4 3 2 32 32 H 0.96999 * 119.99587 * 359.97438 * 8 6 5 33 33 H 1.08993 * 109.45309 * 35.03494 * 9 8 6 34 34 H 1.09004 * 109.49609 * 61.43436 * 10 9 8 35 35 H 1.09000 * 109.49498 * 301.33269 * 10 9 8 36 36 H 1.09005 * 109.58718 * 65.15681 * 11 10 9 37 37 H 1.09001 * 109.58894 * 185.43430 * 11 10 9 38 38 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.53557 * 186.67857 * 21 12 11 40 40 H 1.09002 * 109.67524 * 66.37760 * 21 12 11 41 41 H 1.09007 * 109.49849 * 298.56974 * 22 9 8 42 42 H 1.09003 * 109.49941 * 58.63468 * 22 9 8 43 43 H 1.09002 * 109.46899 * 90.00269 * 25 24 3 44 44 H 1.09000 * 109.46990 * 210.00522 * 25 24 3 45 45 H 1.09002 * 109.47194 * 330.00100 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0824 -1.1557 5 6 2.8063 3.3604 -0.9391 6 6 3.2352 4.3007 -1.9786 7 8 3.2231 3.9624 -3.1477 8 7 3.6420 5.5402 -1.6400 9 6 4.0701 6.4800 -2.6791 10 6 3.8814 7.9139 -2.1786 11 6 4.2975 8.8938 -3.2801 12 7 5.6696 8.5806 -3.7022 13 6 6.6365 9.5502 -3.7069 14 1 6.5659 10.3866 -3.0274 15 6 7.7075 9.4580 -4.5853 16 7 7.6375 8.6560 -5.6265 17 14 9.2481 10.4722 -4.2894 18 1 9.8322 10.1123 -2.9724 19 1 10.2372 10.1943 -5.3616 20 1 8.8998 11.9157 -4.2986 21 6 5.9812 7.2027 -4.1160 22 6 5.5462 6.2418 -3.0051 23 16 2.7721 3.6942 0.7869 24 6 2.1789 2.1306 1.1249 25 6 1.8673 1.6155 2.5064 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.3071 1.6364 -2.1371 32 1 3.6505 5.8101 -0.7084 33 1 3.4707 6.3268 -3.5764 34 1 4.4997 8.0754 -1.2955 35 1 2.8339 8.0756 -1.9245 36 1 3.6224 8.7960 -4.1303 37 1 4.2569 9.9133 -2.8968 38 1 8.3858 8.5918 -6.2405 39 1 7.0540 7.1063 -4.2833 40 1 5.4453 6.9654 -5.0350 41 1 6.1488 6.4190 -2.1142 42 1 5.6838 5.2132 -3.3387 43 1 2.7571 1.1493 2.9296 44 1 1.5546 2.4445 3.1413 45 1 1.0648 0.8802 2.4476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701269473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:48 Heat of formation + Delta-G solvation = -2.954616 kcal Electronic energy + Delta-G solvation = -24597.038434 eV Core-core repulsion = 21126.861501 eV Total energy + Delta-G solvation = -3470.176933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.85966 -38.81414 -37.23421 -34.41876 -33.18595 -32.16426 -31.77702 -30.10055 -29.55143 -27.33816 -25.07929 -24.22598 -23.38991 -22.23372 -21.64961 -20.35721 -19.46958 -18.69418 -17.93882 -16.90305 -16.34622 -15.69302 -15.08147 -14.95572 -14.68199 -14.44252 -14.29557 -13.83871 -13.65696 -13.49363 -13.45705 -13.03289 -12.97757 -12.75003 -12.58364 -12.40370 -12.31281 -11.87109 -11.69823 -11.48243 -11.29903 -11.11687 -10.94565 -10.91640 -10.70907 -10.40101 -10.25754 -10.08153 -9.93490 -9.75100 -9.52879 -8.88423 -8.72415 -8.58085 -8.40778 -6.68494 -5.77216 -3.19602 0.35964 1.26935 1.68288 2.18403 3.27212 3.30914 3.39795 3.45524 3.46366 4.45495 4.50540 4.60140 4.73215 4.90798 4.93786 5.03873 5.14203 5.29351 5.30947 5.34336 5.40929 5.45883 5.48460 5.57611 5.61554 5.62636 5.78314 5.82505 5.90482 6.07680 6.11631 6.23548 6.23839 6.32666 6.43253 6.60333 6.65653 6.77971 6.90062 6.93907 7.38149 7.63375 7.70141 7.80251 8.31672 8.45674 9.21536 9.85159 10.42225 11.31550 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.002471 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.695892 B =11328.433445 C =11557.036311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.119 4.119 4 C -0.051 4.051 5 C -0.257 4.257 6 C 0.585 3.415 7 O -0.528 6.528 8 N -0.719 5.719 9 C 0.152 3.848 10 C -0.140 4.140 11 C 0.149 3.851 12 N -0.593 5.593 13 C -0.254 4.254 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.173 3.827 22 C -0.147 4.147 23 S 0.193 5.807 24 C -0.200 4.200 25 C -0.085 4.085 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.391 0.609 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.255 0.745 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -15.532 16.904 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.084 4.084 5 C -0.377 4.377 6 C 0.371 3.629 7 O -0.406 6.406 8 N -0.369 5.369 9 C 0.049 3.951 10 C -0.180 4.180 11 C 0.022 3.978 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.545 5.545 17 Si 0.733 3.267 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.047 3.953 22 C -0.187 4.187 23 S 0.462 5.538 24 C -0.320 4.320 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.169 0.831 32 H 0.225 0.775 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.181 -14.459 16.802 25.790 hybrid contribution 0.499 -0.666 -0.285 0.879 sum -12.682 -15.125 16.518 25.738 Atomic orbital electron populations 1.21755 0.94791 1.01652 1.02306 1.20239 0.95968 0.91161 1.02911 1.18644 1.04711 0.98429 0.91347 1.20617 0.96128 0.91884 0.99803 1.24655 1.15705 1.00429 0.96954 1.16964 0.77332 0.81368 0.87262 1.90842 1.54649 1.76821 1.18333 1.46231 1.66550 1.13207 1.10919 1.21104 0.96627 0.87353 0.90046 1.22353 1.00037 0.94528 1.01035 1.20829 0.87701 0.95738 0.93582 1.44155 1.04198 1.05834 1.77360 1.19128 1.01133 1.03817 1.14315 0.91644 1.25051 1.00281 0.99307 0.95014 1.70025 1.30968 1.40983 1.12574 0.86365 0.83184 0.79913 0.77272 1.21071 1.21638 1.20875 1.20810 1.01731 0.81522 0.91272 1.22571 0.94125 1.00336 1.01667 1.82957 1.60438 1.11254 0.99171 1.23979 1.08126 0.99564 1.00304 1.20396 1.02510 1.01447 0.89981 0.92346 0.92652 0.92370 0.90781 0.91004 0.83061 0.77510 0.89756 0.91802 0.92538 0.96141 0.92292 0.93514 0.89149 0.96037 0.92616 0.92751 0.90514 0.91167 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.83 37.16 0.37 -0.59 16 2 C -0.06 -0.46 5.54 -27.89 -0.15 -0.61 16 3 C -0.12 -1.15 5.04 -106.45 -0.54 -1.69 16 4 C -0.05 -0.62 9.78 -40.43 -0.40 -1.01 16 5 C -0.26 -3.38 6.45 -36.79 -0.24 -3.62 16 6 C 0.59 9.57 7.75 -12.89 -0.10 9.47 16 7 O -0.53 -10.60 16.50 5.18 0.09 -10.52 16 8 N -0.72 -10.97 5.07 -55.10 -0.28 -11.25 16 9 C 0.15 2.73 2.42 -67.89 -0.16 2.56 16 10 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 11 C 0.15 3.08 6.50 -3.71 -0.02 3.06 16 12 N -0.59 -14.92 3.01 -172.10 -0.52 -15.44 16 13 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 14 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -26.51 11.18 55.49 0.62 -25.89 16 17 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.17 4.26 5.33 -3.56 -0.02 4.24 16 22 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 23 S 0.19 1.89 22.10 -107.50 -2.38 -0.48 16 24 C -0.20 -1.79 6.28 -35.86 -0.23 -2.02 16 25 C -0.08 -0.51 9.71 36.01 0.35 -0.16 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 7.24 -51.92 -0.38 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.07 0.44 7.46 -51.93 -0.39 0.05 16 31 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.39 4.94 7.71 -40.82 -0.31 4.63 16 33 H 0.08 1.69 7.57 -51.93 -0.39 1.29 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.40 6.39 -51.93 -0.33 0.06 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -31.96 373.23 -10.69 -42.65 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.15 Total: 1.73 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.67 Total: -3.17 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.18 Total: -52.58 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.96 -10.69 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701269473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.698 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds