Wall clock time and date at job start Tue Mar 31 2020 13:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47184 * 2 1 4 4 C 1.37482 * 122.44860 * 264.97709 * 3 2 1 5 5 C 1.36648 * 113.29414 * 180.02562 * 4 3 2 6 6 C 1.46585 * 125.45680 * 180.02562 * 5 4 3 7 7 O 1.21708 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00157 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99730 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.45772 * 154.99987 * 9 8 6 11 11 C 1.53184 * 109.31045 * 181.38140 * 10 9 8 12 12 N 1.46928 * 108.89946 * 305.29664 * 11 10 9 13 13 C 1.36937 * 120.62751 * 233.68087 * 12 11 10 14 14 H 1.07999 * 120.00448 * 27.38666 * 13 12 11 15 15 C 1.38820 * 119.99269 * 207.39032 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.25596 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.25602 * 15 13 12 18 18 H 1.48497 * 109.46957 * 60.00245 * 17 15 13 19 19 H 1.48494 * 109.47182 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47157 * 300.00224 * 17 15 13 21 21 C 1.47200 * 118.55359 * 53.53256 * 12 11 10 22 22 C 1.53036 * 109.45844 * 275.06605 * 9 8 6 23 23 S 1.75833 * 109.08558 * 0.26291 * 5 4 3 24 24 C 1.33816 * 122.45282 * 85.00160 * 3 2 1 25 25 C 1.50702 * 124.52012 * 359.94083 * 24 3 2 26 26 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46942 * 300.00018 * 1 2 3 28 28 H 1.09000 * 109.47378 * 59.99564 * 1 2 3 29 29 H 1.09001 * 109.47001 * 240.00367 * 2 1 3 30 30 H 1.08997 * 109.47356 * 119.99899 * 2 1 3 31 31 H 1.08002 * 123.35140 * 0.04291 * 4 3 2 32 32 H 0.96999 * 119.99587 * 359.97438 * 8 6 5 33 33 H 1.08993 * 109.45309 * 35.03494 * 9 8 6 34 34 H 1.09004 * 109.49609 * 61.43436 * 10 9 8 35 35 H 1.09000 * 109.49498 * 301.33269 * 10 9 8 36 36 H 1.09005 * 109.58718 * 65.15681 * 11 10 9 37 37 H 1.09001 * 109.58894 * 185.43430 * 11 10 9 38 38 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.53557 * 186.67857 * 21 12 11 40 40 H 1.09002 * 109.67524 * 66.37760 * 21 12 11 41 41 H 1.09007 * 109.49849 * 298.56974 * 22 9 8 42 42 H 1.09003 * 109.49941 * 58.63468 * 22 9 8 43 43 H 1.09002 * 109.46899 * 90.00269 * 25 24 3 44 44 H 1.09000 * 109.46990 * 210.00522 * 25 24 3 45 45 H 1.09002 * 109.47194 * 330.00100 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0824 -1.1557 5 6 2.8063 3.3604 -0.9391 6 6 3.2352 4.3007 -1.9786 7 8 3.2231 3.9624 -3.1477 8 7 3.6420 5.5402 -1.6400 9 6 4.0701 6.4800 -2.6791 10 6 3.8814 7.9139 -2.1786 11 6 4.2975 8.8938 -3.2801 12 7 5.6696 8.5806 -3.7022 13 6 6.6365 9.5502 -3.7069 14 1 6.5659 10.3866 -3.0274 15 6 7.7075 9.4580 -4.5853 16 7 7.6375 8.6560 -5.6265 17 14 9.2481 10.4722 -4.2894 18 1 9.8322 10.1123 -2.9724 19 1 10.2372 10.1943 -5.3616 20 1 8.8998 11.9157 -4.2986 21 6 5.9812 7.2027 -4.1160 22 6 5.5462 6.2418 -3.0051 23 16 2.7721 3.6942 0.7869 24 6 2.1789 2.1306 1.1249 25 6 1.8673 1.6155 2.5064 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.3071 1.6364 -2.1371 32 1 3.6505 5.8101 -0.7084 33 1 3.4707 6.3268 -3.5764 34 1 4.4997 8.0754 -1.2955 35 1 2.8339 8.0756 -1.9245 36 1 3.6224 8.7960 -4.1303 37 1 4.2569 9.9133 -2.8968 38 1 8.3858 8.5918 -6.2405 39 1 7.0540 7.1063 -4.2833 40 1 5.4453 6.9654 -5.0350 41 1 6.1488 6.4190 -2.1142 42 1 5.6838 5.2132 -3.3387 43 1 2.7571 1.1493 2.9296 44 1 1.5546 2.4445 3.1413 45 1 1.0648 0.8802 2.4476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701269473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:47 Heat of formation + Delta-G solvation = -21.749753 kcal Electronic energy + Delta-G solvation = -24597.853452 eV Core-core repulsion = 21126.861501 eV Total energy + Delta-G solvation = -3470.991952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12683 -39.74533 -38.82796 -36.07285 -34.16128 -33.72300 -32.42673 -31.82083 -31.28925 -28.30994 -26.79922 -24.84400 -24.61424 -23.94703 -23.12005 -21.60395 -20.99480 -19.64617 -19.01028 -18.68494 -17.52734 -16.93797 -16.74195 -16.21073 -15.92353 -15.55477 -15.37575 -15.17804 -15.04691 -14.82516 -14.57009 -14.33655 -14.13020 -14.04404 -13.59512 -13.30443 -13.20835 -13.02362 -12.90095 -12.72930 -12.57927 -12.56415 -12.40787 -12.16402 -12.10929 -11.89277 -11.84829 -11.60209 -11.58032 -11.46100 -11.11872 -10.59202 -10.18024 -9.61844 -9.35773 -8.73951 -7.88181 -5.33912 -0.53419 0.44602 0.87552 1.31134 1.47338 1.50300 1.57006 2.02808 2.12314 2.51328 3.27648 3.60538 3.70313 3.82158 3.86515 4.01975 4.08540 4.15864 4.27740 4.39158 4.43143 4.53150 4.62637 4.62987 4.71221 4.73757 4.74688 4.81017 4.93321 4.98225 5.00202 5.03220 5.09641 5.10846 5.16586 5.27874 5.31330 5.40955 5.44210 5.45911 5.54255 5.62362 5.67258 6.36930 6.41566 7.08058 7.11555 7.82424 8.36069 9.19234 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.002471 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.695892 B =11328.433445 C =11557.036311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.051 4.051 5 C -0.300 4.300 6 C 0.584 3.416 7 O -0.578 6.578 8 N -0.707 5.707 9 C 0.162 3.838 10 C -0.123 4.123 11 C 0.142 3.858 12 N -0.610 5.610 13 C -0.262 4.262 14 H 0.075 0.925 15 C -0.056 4.056 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.277 1.277 19 H -0.298 1.298 20 H -0.272 1.272 21 C 0.182 3.818 22 C -0.131 4.131 23 S 0.234 5.766 24 C -0.186 4.186 25 C -0.088 4.088 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.408 0.592 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.013 0.987 37 H 0.070 0.930 38 H 0.249 0.751 39 H 0.057 0.943 40 H -0.009 1.009 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 -15.845 20.888 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.420 4.420 6 C 0.372 3.628 7 O -0.460 6.460 8 N -0.358 5.358 9 C 0.057 3.943 10 C -0.162 4.162 11 C 0.016 3.984 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.093 0.907 15 C -0.251 4.251 16 N -0.585 5.585 17 Si 0.798 3.202 18 H -0.203 1.203 19 H -0.224 1.224 20 H -0.198 1.198 21 C 0.056 3.944 22 C -0.171 4.171 23 S 0.504 5.496 24 C -0.306 4.306 25 C -0.147 4.147 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.157 0.843 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.031 0.969 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.009 0.991 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.286 -14.753 20.854 29.268 hybrid contribution 0.747 -0.629 -1.464 1.760 sum -13.538 -15.382 19.391 28.211 Atomic orbital electron populations 1.21744 0.94165 1.02498 1.01873 1.20299 0.96438 0.89695 1.03704 1.18797 1.05365 0.99710 0.90621 1.20768 0.95514 0.91837 1.00407 1.24369 1.18677 1.00401 0.98542 1.17409 0.76315 0.81669 0.87376 1.90810 1.56757 1.77732 1.20657 1.45924 1.66131 1.12596 1.11101 1.20753 0.94235 0.88930 0.90342 1.22166 1.02392 0.92043 0.99615 1.21032 0.85265 0.97598 0.94509 1.44401 1.05877 1.05506 1.77532 1.19540 1.01669 1.04103 1.13849 0.90716 1.25885 1.03332 1.00922 0.94919 1.70204 1.31496 1.43099 1.13711 0.85293 0.79194 0.78762 0.76920 1.20255 1.22401 1.19755 1.20510 0.99277 0.82918 0.91710 1.22314 0.96248 0.98419 1.00115 1.82718 1.59662 1.11567 0.95694 1.24498 1.05596 0.98848 1.01631 1.20590 1.03710 1.02382 0.87984 0.90892 0.92011 0.93860 0.91073 0.89171 0.84308 0.75559 0.92092 0.90517 0.88947 0.96924 0.91125 0.94160 0.92443 0.99123 0.91944 0.93712 0.89059 0.89823 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.83 71.98 0.71 -0.86 16 2 C -0.06 -0.77 5.54 29.85 0.17 -0.60 16 3 C -0.13 -2.35 5.04 -21.05 -0.11 -2.45 16 4 C -0.05 -1.22 9.78 21.72 0.21 -1.01 16 5 C -0.30 -7.76 6.45 24.08 0.16 -7.60 16 6 C 0.58 19.37 7.75 86.42 0.67 20.04 16 7 O -0.58 -24.34 16.50 -4.37 -0.07 -24.42 16 8 N -0.71 -20.99 5.07 -446.46 -2.26 -23.26 16 9 C 0.16 5.80 2.42 45.02 0.11 5.91 16 10 C -0.12 -3.90 5.55 30.67 0.17 -3.73 16 11 C 0.14 5.78 6.50 86.36 0.56 6.35 16 12 N -0.61 -31.14 3.01 -698.39 -2.10 -33.24 16 13 C -0.26 -14.41 9.59 84.04 0.81 -13.61 16 14 H 0.08 3.91 7.89 -2.91 -0.02 3.88 16 15 C -0.06 -3.15 4.92 84.86 0.42 -2.73 16 16 N -0.94 -57.37 11.18 21.65 0.24 -57.13 16 17 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 C 0.18 9.43 5.33 86.31 0.46 9.89 16 22 C -0.13 -5.49 5.65 30.67 0.17 -5.31 16 23 S 0.23 4.01 22.10 -56.49 -1.25 2.76 16 24 C -0.19 -2.76 6.28 24.68 0.15 -2.61 16 25 C -0.09 -0.68 9.71 71.24 0.69 0.01 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.58 7.24 -2.38 -0.02 0.56 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.09 0.79 7.46 -2.39 -0.02 0.78 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.41 9.41 7.71 -92.71 -0.72 8.69 16 33 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 38 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 39 H 0.06 3.33 6.04 -2.39 -0.01 3.31 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 42 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.09 0.51 6.39 -2.39 -0.02 0.50 16 Total: -1.00 -72.62 373.23 2.21 -70.41 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.27 Total: 15.92 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.35 Total: 1.67 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.12 Total: -113.63 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.07 Total: -24.42 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.25 Total: 2.76 kcal Total: -72.62 2.21 -70.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701269473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.662 kcal (2) G-P(sol) polarization free energy of solvation -72.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds