Wall clock time and date at job start Tue Mar 31 2020 13:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47167 * 2 1 4 4 C 1.38280 * 119.92990 * 269.72557 * 3 2 1 5 5 C 1.38117 * 120.07432 * 179.72544 * 4 3 2 6 6 C 1.38884 * 119.92310 * 0.55221 * 5 4 3 7 7 N 1.39886 * 120.06670 * 179.70168 * 6 5 4 8 8 C 1.34771 * 120.00497 * 314.75531 * 7 6 5 9 9 S 1.71202 * 119.99680 * 4.14666 * 8 7 6 10 10 N 1.34772 * 120.00412 * 184.14778 * 8 7 6 11 11 C 1.46502 * 119.99939 * 359.97438 * 10 8 7 12 12 C 1.50695 * 109.47202 * 89.99869 * 11 10 8 13 13 H 1.08003 * 120.00174 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00133 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00160 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47485 * 89.99738 * 16 14 12 18 18 H 1.48497 * 109.47443 * 209.99773 * 16 14 12 19 19 H 1.48505 * 109.47229 * 329.99974 * 16 14 12 20 20 C 1.46501 * 120.00492 * 180.02562 * 10 8 7 21 21 C 1.52998 * 109.47231 * 89.99537 * 20 10 8 22 22 O 1.42904 * 109.46780 * 65.00404 * 21 20 10 23 23 C 1.42903 * 113.99563 * 180.02562 * 22 21 20 24 24 C 1.38882 * 119.85634 * 359.72526 * 6 5 4 25 25 C 1.38110 * 119.93117 * 359.97438 * 24 6 5 26 26 H 1.08997 * 109.47385 * 59.99279 * 1 2 3 27 27 H 1.09006 * 109.46438 * 299.99883 * 1 2 3 28 28 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47119 * 120.00365 * 2 1 3 30 30 H 1.09003 * 109.46889 * 240.00314 * 2 1 3 31 31 H 1.08010 * 119.96312 * 359.97438 * 4 3 2 32 32 H 1.07991 * 120.03438 * 180.25289 * 5 4 3 33 33 H 0.97001 * 119.99454 * 134.75492 * 7 6 5 34 34 H 1.09000 * 109.47181 * 210.00436 * 11 10 8 35 35 H 1.09003 * 109.47075 * 330.00144 * 11 10 8 36 36 H 0.96999 * 120.00392 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47439 * 210.00145 * 20 10 8 38 38 H 1.09005 * 109.46613 * 329.99593 * 20 10 8 39 39 H 1.08996 * 109.46842 * 185.00085 * 21 20 10 40 40 H 1.09003 * 109.47071 * 305.00396 * 21 20 10 41 41 H 1.08994 * 109.47161 * 59.99745 * 23 22 21 42 42 H 1.09000 * 109.47059 * 180.02562 * 23 22 21 43 43 H 1.09008 * 109.47065 * 299.99815 * 23 22 21 44 44 H 1.08002 * 120.03172 * 179.97438 * 24 6 5 45 45 H 1.08001 * 119.96192 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2677 2.0694 -1.1984 5 6 2.7227 3.3734 -1.2019 6 6 2.9548 4.0295 0.0000 7 7 3.4216 5.3481 0.0000 8 6 4.4278 5.7068 -0.8217 9 16 5.0635 4.5773 -1.9402 10 7 4.9337 6.9546 -0.7628 11 6 4.3894 7.9214 0.1939 12 6 5.1474 7.8240 1.4927 13 1 5.9543 7.1135 1.5952 14 6 4.8109 8.6421 2.5503 15 7 3.8281 9.5071 2.4258 16 14 5.7510 8.5220 4.1600 17 1 6.9065 9.4542 4.1292 18 1 4.8530 8.8839 5.2860 19 1 6.2410 7.1323 4.3446 20 6 6.0272 7.3447 -1.6563 21 6 5.4479 7.9160 -2.9521 22 8 4.7436 9.1261 -2.6660 23 6 4.1598 9.7441 -3.8146 24 6 2.7228 3.3733 1.2019 25 6 2.2619 2.0714 1.1984 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0917 1.5569 -2.1327 32 1 2.9025 3.8807 -2.1382 33 1 3.0209 6.0044 0.5914 34 1 4.4893 8.9286 -0.2106 35 1 3.3361 7.7038 0.3709 36 1 3.5915 10.0829 3.1697 37 1 6.6426 8.1009 -1.1689 38 1 6.6382 6.4716 -1.8854 39 1 6.2577 8.1236 -3.6515 40 1 4.7627 7.1925 -3.3938 41 1 3.4479 9.0584 -4.2738 42 1 3.6442 10.6562 -3.5139 43 1 4.9426 9.9896 -4.5324 44 1 2.9027 3.8806 2.1382 45 1 2.0818 1.5605 2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728449691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:17 Heat of formation + Delta-G solvation = -7.885777 kcal Electronic energy + Delta-G solvation = -25029.377391 eV Core-core repulsion = 21558.986626 eV Total energy + Delta-G solvation = -3470.390765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87109 -38.61239 -37.35113 -35.53684 -33.15648 -32.93381 -30.68046 -30.05244 -28.53861 -27.56816 -26.04195 -24.42501 -23.59770 -22.81935 -22.48104 -20.71954 -20.33282 -18.05087 -17.43325 -16.84879 -16.18942 -15.88995 -15.47564 -15.27838 -15.12982 -14.90207 -14.59177 -13.92484 -13.75091 -13.66980 -13.41949 -13.26057 -13.02366 -12.58436 -12.38691 -12.22177 -12.08737 -11.66225 -11.62639 -11.42931 -11.24255 -11.13525 -11.01669 -10.91798 -10.78520 -10.66370 -10.64751 -10.21064 -9.98679 -9.45703 -8.92069 -8.78254 -8.67050 -7.78936 -7.18632 -6.59267 -6.38212 -4.49789 1.40467 1.78007 2.17644 2.54771 3.11891 3.19320 3.19994 3.24540 3.91344 4.04978 4.08601 4.19514 4.88302 4.94770 4.96787 5.26816 5.29914 5.30748 5.37607 5.40322 5.51136 5.55979 5.58710 5.62099 5.69788 5.74133 5.79651 5.83650 5.90242 5.95678 6.10929 6.15655 6.24481 6.30757 6.38440 6.60208 6.67895 6.82320 6.91086 7.00776 7.13198 7.31454 7.42196 7.51245 7.65598 7.73943 7.92341 8.57664 9.19490 10.67287 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.004401 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.267673 B = 6360.630803 C = 8396.441218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.066 4.066 6 C 0.135 3.865 7 N -0.632 5.632 8 C 0.574 3.426 9 S -0.705 6.705 10 N -0.526 5.526 11 C 0.226 3.774 12 C -0.550 4.550 13 H 0.064 0.936 14 C 0.070 3.930 15 N -0.884 5.884 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.116 3.884 21 C 0.049 3.951 22 O -0.382 6.382 23 C 0.034 3.966 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.417 0.583 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.269 0.731 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -8.398 -6.392 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.137 4.137 5 C -0.089 4.089 6 C 0.042 3.958 7 N -0.260 5.260 8 C 0.211 3.789 9 S -0.573 6.573 10 N -0.227 5.227 11 C 0.104 3.896 12 C -0.589 4.589 13 H 0.083 0.917 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.008 4.008 21 C -0.029 4.029 22 O -0.301 6.301 23 C -0.063 4.063 24 C -0.143 4.143 25 C -0.138 4.138 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.165 0.835 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.488 -8.691 -6.804 11.916 hybrid contribution 0.068 1.062 1.600 1.922 sum -4.420 -7.629 -5.204 10.238 Atomic orbital electron populations 1.21747 0.95071 1.01254 1.02238 1.20490 0.95854 0.93060 1.02511 1.19826 0.99886 0.95977 0.93290 1.20765 1.01036 0.94670 0.97195 1.21527 0.93581 0.95321 0.98423 1.17473 1.00132 0.83957 0.94283 1.42283 1.32997 1.10650 1.40112 1.22003 0.82668 0.87691 0.86547 1.92927 1.73397 1.48382 1.42601 1.47510 1.32007 1.08723 1.34447 1.19848 0.94073 0.88827 0.86826 1.21380 1.18941 1.22141 0.96426 0.91733 1.24932 0.94942 0.94463 0.99095 1.69922 1.27884 1.21655 1.32673 0.86421 0.79736 0.78811 0.82174 1.20211 1.20863 1.19635 1.21940 0.88532 1.01690 0.88644 1.22941 0.96163 0.86434 0.97364 1.88014 1.71438 1.38818 1.31809 1.22675 0.96899 0.97776 0.88937 1.20969 1.01712 0.94889 0.96706 1.20635 1.01690 0.94046 0.97386 0.92552 0.92625 0.92798 0.91376 0.91249 0.86259 0.83547 0.74046 0.91473 0.95121 0.92158 0.88638 0.86360 0.92337 0.92202 0.94521 0.89902 0.94503 0.85845 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.08 -0.82 6.06 -27.88 -0.17 -0.99 16 3 C -0.09 -1.16 5.14 -104.59 -0.54 -1.70 16 4 C -0.12 -1.67 9.69 -39.61 -0.38 -2.05 16 5 C -0.07 -1.10 7.87 -39.39 -0.31 -1.41 16 6 C 0.14 2.36 5.93 -83.70 -0.50 1.87 16 7 N -0.63 -11.93 5.19 -11.40 -0.06 -11.99 16 8 C 0.57 11.58 7.56 -86.93 -0.66 10.93 16 9 S -0.70 -14.78 24.22 -107.50 -2.60 -17.39 16 10 N -0.53 -10.57 2.42 -177.09 -0.43 -11.00 16 11 C 0.23 5.11 4.78 -5.20 -0.02 5.08 16 12 C -0.55 -13.70 9.39 -34.44 -0.32 -14.02 16 13 H 0.06 1.67 7.81 -52.48 -0.41 1.25 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.88 -23.34 13.29 55.43 0.74 -22.61 16 16 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C 0.12 2.05 5.57 -4.04 -0.02 2.02 16 21 C 0.05 0.77 6.28 37.16 0.23 1.00 16 22 O -0.38 -6.49 9.52 -35.23 -0.34 -6.83 16 23 C 0.03 0.44 11.01 101.05 1.11 1.55 16 24 C -0.12 -1.91 9.97 -39.39 -0.39 -2.30 16 25 C -0.12 -1.61 9.69 -39.61 -0.38 -1.99 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.15 2.66 6.09 -44.13 -0.27 2.39 16 33 H 0.42 7.92 6.52 -40.82 -0.27 7.65 16 34 H 0.07 1.65 7.11 -51.93 -0.37 1.28 16 35 H 0.03 0.72 6.31 -51.93 -0.33 0.39 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.10 1.69 8.07 -51.93 -0.42 1.27 16 38 H 0.12 2.10 6.58 -51.93 -0.34 1.76 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -28.57 382.08 -11.07 -39.64 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.03 Total: 10.72 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.08 Total: -1.26 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.25 Total: -45.59 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.34 Total: -6.83 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: -14.78 SS G_CDS: -2.60 Total: -17.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.57 -11.07 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.754 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds