Wall clock time and date at job start Tue Mar 31 2020 13:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47167 * 2 1 4 4 C 1.38280 * 119.92990 * 269.72557 * 3 2 1 5 5 C 1.38117 * 120.07432 * 179.72544 * 4 3 2 6 6 C 1.38884 * 119.92310 * 0.55221 * 5 4 3 7 7 N 1.39886 * 120.06670 * 179.70168 * 6 5 4 8 8 C 1.34771 * 120.00497 * 314.75531 * 7 6 5 9 9 S 1.71202 * 119.99680 * 4.14666 * 8 7 6 10 10 N 1.34772 * 120.00412 * 184.14778 * 8 7 6 11 11 C 1.46502 * 119.99939 * 359.97438 * 10 8 7 12 12 C 1.50695 * 109.47202 * 89.99869 * 11 10 8 13 13 H 1.08003 * 120.00174 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00133 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00160 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47485 * 89.99738 * 16 14 12 18 18 H 1.48497 * 109.47443 * 209.99773 * 16 14 12 19 19 H 1.48505 * 109.47229 * 329.99974 * 16 14 12 20 20 C 1.46501 * 120.00492 * 180.02562 * 10 8 7 21 21 C 1.52998 * 109.47231 * 89.99537 * 20 10 8 22 22 O 1.42904 * 109.46780 * 65.00404 * 21 20 10 23 23 C 1.42903 * 113.99563 * 180.02562 * 22 21 20 24 24 C 1.38882 * 119.85634 * 359.72526 * 6 5 4 25 25 C 1.38110 * 119.93117 * 359.97438 * 24 6 5 26 26 H 1.08997 * 109.47385 * 59.99279 * 1 2 3 27 27 H 1.09006 * 109.46438 * 299.99883 * 1 2 3 28 28 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47119 * 120.00365 * 2 1 3 30 30 H 1.09003 * 109.46889 * 240.00314 * 2 1 3 31 31 H 1.08010 * 119.96312 * 359.97438 * 4 3 2 32 32 H 1.07991 * 120.03438 * 180.25289 * 5 4 3 33 33 H 0.97001 * 119.99454 * 134.75492 * 7 6 5 34 34 H 1.09000 * 109.47181 * 210.00436 * 11 10 8 35 35 H 1.09003 * 109.47075 * 330.00144 * 11 10 8 36 36 H 0.96999 * 120.00392 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47439 * 210.00145 * 20 10 8 38 38 H 1.09005 * 109.46613 * 329.99593 * 20 10 8 39 39 H 1.08996 * 109.46842 * 185.00085 * 21 20 10 40 40 H 1.09003 * 109.47071 * 305.00396 * 21 20 10 41 41 H 1.08994 * 109.47161 * 59.99745 * 23 22 21 42 42 H 1.09000 * 109.47059 * 180.02562 * 23 22 21 43 43 H 1.09008 * 109.47065 * 299.99815 * 23 22 21 44 44 H 1.08002 * 120.03172 * 179.97438 * 24 6 5 45 45 H 1.08001 * 119.96192 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2677 2.0694 -1.1984 5 6 2.7227 3.3734 -1.2019 6 6 2.9548 4.0295 0.0000 7 7 3.4216 5.3481 0.0000 8 6 4.4278 5.7068 -0.8217 9 16 5.0635 4.5773 -1.9402 10 7 4.9337 6.9546 -0.7628 11 6 4.3894 7.9214 0.1939 12 6 5.1474 7.8240 1.4927 13 1 5.9543 7.1135 1.5952 14 6 4.8109 8.6421 2.5503 15 7 3.8281 9.5071 2.4258 16 14 5.7510 8.5220 4.1600 17 1 6.9065 9.4542 4.1292 18 1 4.8530 8.8839 5.2860 19 1 6.2410 7.1323 4.3446 20 6 6.0272 7.3447 -1.6563 21 6 5.4479 7.9160 -2.9521 22 8 4.7436 9.1261 -2.6660 23 6 4.1598 9.7441 -3.8146 24 6 2.7228 3.3733 1.2019 25 6 2.2619 2.0714 1.1984 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0917 1.5569 -2.1327 32 1 2.9025 3.8807 -2.1382 33 1 3.0209 6.0044 0.5914 34 1 4.4893 8.9286 -0.2106 35 1 3.3361 7.7038 0.3709 36 1 3.5915 10.0829 3.1697 37 1 6.6426 8.1009 -1.1689 38 1 6.6382 6.4716 -1.8854 39 1 6.2577 8.1236 -3.6515 40 1 4.7627 7.1925 -3.3938 41 1 3.4479 9.0584 -4.2738 42 1 3.6442 10.6562 -3.5139 43 1 4.9426 9.9896 -4.5324 44 1 2.9027 3.8806 2.1382 45 1 2.0818 1.5605 2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728449691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:16 Heat of formation + Delta-G solvation = -20.794100 kcal Electronic energy + Delta-G solvation = -25029.937138 eV Core-core repulsion = 21558.986626 eV Total energy + Delta-G solvation = -3470.950511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24493 -39.95922 -38.61306 -36.86913 -35.00753 -34.03637 -31.86464 -31.46298 -30.06735 -28.88892 -27.18218 -26.09374 -24.88250 -24.06102 -23.68799 -22.05035 -21.66716 -19.45872 -18.99549 -18.74144 -17.49140 -17.16004 -16.73556 -16.68822 -16.40238 -16.35022 -15.93840 -15.36076 -15.03689 -14.82764 -14.59094 -14.36923 -14.23183 -14.01558 -13.83874 -13.55603 -13.29512 -13.08454 -13.02376 -12.82339 -12.70814 -12.53960 -12.45106 -12.16321 -12.12074 -11.93086 -11.80725 -11.79326 -11.61684 -10.74791 -10.66022 -10.34719 -9.88617 -9.14725 -8.84492 -8.32587 -8.16947 -6.51494 0.07844 0.58640 0.70702 0.95459 1.35899 1.38995 1.47930 1.72790 2.27076 2.41292 2.86887 2.89656 2.97766 3.95410 3.98616 4.04303 4.06566 4.16323 4.30758 4.36413 4.47687 4.49860 4.52747 4.54846 4.57000 4.64078 4.70281 4.75195 4.80851 4.84869 4.86753 5.05556 5.13538 5.16825 5.19130 5.32264 5.41132 5.48500 5.50330 5.58922 5.70707 5.79813 5.81018 5.96789 6.16819 6.23478 6.39681 6.60371 7.21004 8.71549 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.004401 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.267673 B = 6360.630803 C = 8396.441218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.080 4.080 4 C -0.119 4.119 5 C -0.078 4.078 6 C 0.103 3.897 7 N -0.628 5.628 8 C 0.571 3.429 9 S -0.722 6.722 10 N -0.529 5.529 11 C 0.247 3.753 12 C -0.557 4.557 13 H 0.053 0.947 14 C 0.031 3.969 15 N -0.911 5.911 16 Si 0.960 3.040 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.273 1.273 20 C 0.113 3.887 21 C 0.059 3.941 22 O -0.413 6.413 23 C 0.029 3.971 24 C -0.130 4.130 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.414 0.586 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.272 0.728 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.124 0.876 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -10.031 -6.010 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.100 4.100 6 C 0.010 3.990 7 N -0.255 5.255 8 C 0.208 3.792 9 S -0.591 6.591 10 N -0.231 5.231 11 C 0.124 3.876 12 C -0.595 4.595 13 H 0.071 0.929 14 C -0.171 4.171 15 N -0.549 5.549 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.198 1.198 20 C -0.009 4.009 21 C -0.019 4.019 22 O -0.333 6.333 23 C -0.067 4.067 24 C -0.151 4.151 25 C -0.135 4.135 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.255 0.745 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.142 0.858 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.760 -10.352 -6.437 13.086 hybrid contribution 0.075 1.496 1.454 2.087 sum -4.685 -8.856 -4.983 11.190 Atomic orbital electron populations 1.21732 0.94021 1.02432 1.01915 1.20571 0.96606 0.90816 1.03762 1.20224 0.97964 0.97413 0.92453 1.21027 1.00321 0.93729 0.98789 1.21418 0.94878 0.96394 0.97353 1.17751 1.02191 0.83613 0.95397 1.42355 1.32378 1.11389 1.39334 1.22009 0.82984 0.87457 0.86777 1.92840 1.74069 1.48888 1.43323 1.47467 1.32632 1.08361 1.34621 1.19388 0.93383 0.88325 0.86474 1.21500 1.18705 1.21815 0.97522 0.92905 1.25601 0.95597 0.94104 1.01825 1.70001 1.28968 1.22291 1.33620 0.85518 0.78633 0.78504 0.78838 1.19840 1.20210 1.19822 1.22060 0.88057 1.01619 0.89209 1.22839 0.96660 0.85937 0.96436 1.87966 1.71982 1.39154 1.34149 1.22864 0.97696 0.97839 0.88318 1.21119 1.02016 0.95900 0.96043 1.20990 1.00397 0.93141 0.98941 0.93033 0.92854 0.90913 0.89947 0.90265 0.84357 0.85483 0.74476 0.93439 0.96089 0.91922 0.88971 0.86437 0.89310 0.93355 0.94089 0.89230 0.92202 0.85791 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.38 16 2 C -0.08 -1.34 6.06 29.85 0.18 -1.16 16 3 C -0.08 -1.90 5.14 -19.84 -0.10 -2.00 16 4 C -0.12 -3.26 9.69 22.25 0.22 -3.04 16 5 C -0.08 -2.64 7.87 22.40 0.18 -2.46 16 6 C 0.10 3.66 5.93 38.16 0.23 3.89 16 7 N -0.63 -24.50 5.19 -189.99 -0.99 -25.49 16 8 C 0.57 23.75 7.56 179.06 1.35 25.10 16 9 S -0.72 -30.78 24.22 -56.49 -1.37 -32.15 16 10 N -0.53 -21.91 2.42 -714.18 -1.73 -23.64 16 11 C 0.25 11.54 4.78 85.63 0.41 11.95 16 12 C -0.56 -28.22 9.39 25.60 0.24 -27.98 16 13 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 14 C 0.03 1.57 5.46 84.65 0.46 2.04 16 15 N -0.91 -48.51 13.29 21.45 0.28 -48.23 16 16 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.11 4.08 5.57 86.38 0.48 4.57 16 21 C 0.06 1.85 6.28 71.98 0.45 2.30 16 22 O -0.41 -14.09 9.52 -148.98 -1.42 -15.51 16 23 C 0.03 0.72 11.01 113.37 1.25 1.97 16 24 C -0.13 -4.03 9.97 22.39 0.22 -3.80 16 25 C -0.12 -2.92 9.69 22.25 0.22 -2.70 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 30 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.13 4.76 6.09 -8.23 -0.05 4.71 16 33 H 0.41 16.41 6.52 -92.71 -0.60 15.81 16 34 H 0.05 2.42 7.11 -2.39 -0.02 2.40 16 35 H 0.02 1.03 6.31 -2.39 -0.02 1.01 16 36 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 37 H 0.09 3.34 8.07 -2.39 -0.02 3.32 16 38 H 0.12 4.23 6.58 -2.38 -0.02 4.22 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 45 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -61.32 382.08 3.65 -57.67 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.34 Total: 37.15 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.50 Total: 7.27 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -2.43 Total: -97.35 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.42 Total: -15.51 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: -30.78 SS G_CDS: -1.37 Total: -32.15 kcal Total: -61.32 3.65 -57.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.875 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds