Wall clock time and date at job start Tue Mar 31 2020 14:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99702 * 2 1 4 4 C 1.53001 * 109.46929 * 124.99986 * 3 2 1 5 5 H 1.09007 * 109.47303 * 304.99952 * 4 3 2 6 6 N 1.46497 * 109.47007 * 65.00036 * 4 3 2 7 7 C 1.34779 * 120.00105 * 274.99718 * 6 4 3 8 8 O 1.21545 * 119.99884 * 0.02562 * 7 6 4 9 9 C 1.47883 * 119.99891 * 180.02562 * 7 6 4 10 10 C 1.39922 * 120.02841 * 359.73079 * 9 7 6 11 11 C 1.38325 * 120.35911 * 179.71774 * 10 9 7 12 12 C 1.37749 * 120.41201 * 0.55582 * 11 10 9 13 13 C 1.40753 * 120.04002 * 359.71713 * 12 11 10 14 14 C 1.41436 * 120.17752 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00295 * 334.93446 * 14 13 12 16 16 C 1.39943 * 119.99739 * 154.93158 * 14 13 12 17 17 N 1.30819 * 120.00256 * 342.59316 * 16 14 13 18 18 Si 1.86797 * 119.99605 * 162.58532 * 16 14 13 19 19 H 1.48501 * 109.46956 * 90.00598 * 18 16 14 20 20 H 1.48509 * 109.46938 * 210.00041 * 18 16 14 21 21 H 1.48497 * 109.47761 * 330.00499 * 18 16 14 22 22 C 1.38999 * 120.02385 * 179.97438 * 9 7 6 23 23 C 1.50697 * 109.47064 * 185.00229 * 4 3 2 24 24 C 1.38648 * 120.79120 * 280.02174 * 23 4 3 25 25 C 1.38204 * 119.16591 * 179.97438 * 24 23 4 26 26 N 1.31867 * 120.76478 * 0.02562 * 25 24 23 27 27 C 1.31868 * 121.72246 * 359.97438 * 26 25 24 28 28 C 1.38206 * 120.76759 * 359.97438 * 27 26 25 29 29 H 1.07996 * 120.00225 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99581 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00225 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47245 * 5.00446 * 3 2 1 33 33 H 1.08998 * 109.47320 * 244.99950 * 3 2 1 34 34 H 0.96996 * 120.00117 * 95.00652 * 6 4 3 35 35 H 1.08000 * 119.81671 * 359.97408 * 10 9 7 36 36 H 1.08000 * 119.79456 * 180.25575 * 11 10 9 37 37 H 1.08003 * 119.98157 * 179.74467 * 12 11 10 38 38 H 0.96998 * 120.00674 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.20100 * 359.97438 * 22 9 7 40 40 H 1.08005 * 120.41594 * 359.97438 * 24 23 4 41 41 H 1.08006 * 119.61513 * 180.30088 * 25 24 23 42 42 H 1.08006 * 119.61631 * 179.97438 * 27 26 25 43 43 H 1.07993 * 120.41615 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 2.4882 1.1469 2.1061 6 7 4.0546 0.2970 1.0001 7 6 3.8093 -0.9670 1.3985 8 8 2.7419 -1.2473 1.9079 9 6 4.8388 -2.0127 1.2157 10 6 6.0656 -1.6919 0.6243 11 6 7.0356 -2.6634 0.4553 12 6 6.8012 -3.9601 0.8567 13 6 5.5711 -4.3030 1.4485 14 6 5.3275 -5.6334 1.8623 15 1 5.8576 -6.4500 1.3947 16 6 4.3996 -5.8916 2.8775 17 7 4.0130 -4.9263 3.6713 18 14 3.7130 -7.6146 3.0990 19 1 4.5775 -8.3751 4.0369 20 1 2.3368 -7.5319 3.6509 21 1 3.6789 -8.3067 1.7856 22 6 4.5866 -3.3164 1.6269 23 6 3.6989 2.6841 1.2542 24 6 4.7644 2.9968 0.4241 25 6 5.3479 4.2460 0.5186 26 7 4.9027 5.1345 1.3854 27 6 3.8918 4.8718 2.1904 28 6 3.2580 3.6442 2.1520 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 4.9063 0.5207 0.5934 35 1 6.2577 -0.6792 0.3016 36 1 7.9809 -2.4047 0.0014 37 1 7.5620 -4.7140 0.7177 38 1 3.3696 -5.1051 4.3748 39 1 3.6398 -3.5693 2.0807 40 1 5.1338 2.2732 -0.2876 41 1 6.1752 4.4990 -0.1279 42 1 3.5552 5.6247 2.8877 43 1 2.4304 3.4353 2.8135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734461531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:01 Heat of formation + Delta-G solvation = 34.788528 kcal Electronic energy + Delta-G solvation = -26026.149590 eV Core-core repulsion = 22422.165371 eV Total energy + Delta-G solvation = -3603.984219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64968 -39.34117 -37.31566 -36.02049 -33.91602 -33.60868 -32.35654 -31.38409 -30.22754 -29.49018 -28.44257 -25.37986 -24.68929 -23.79734 -22.78530 -21.22372 -20.87723 -19.73949 -19.50920 -17.96065 -17.08991 -16.56999 -15.90968 -15.77095 -15.56771 -15.40333 -15.01966 -14.66256 -14.09271 -14.07079 -13.84593 -13.81268 -13.29699 -13.18000 -12.84391 -12.68715 -12.55740 -12.43913 -11.90377 -11.69515 -11.37670 -11.16608 -11.08405 -10.84500 -10.72494 -10.53271 -10.10039 -9.89753 -9.74401 -9.70043 -9.36608 -9.33753 -9.25249 -9.05631 -8.61696 -7.68453 -7.56670 -6.84060 -4.45677 0.92472 0.99226 2.14359 2.54181 2.77204 3.05267 3.07585 3.13099 3.46256 3.67245 3.79162 3.88895 4.24624 4.28782 4.58628 4.61140 4.85592 4.94540 5.08972 5.15390 5.23984 5.38431 5.45054 5.55753 5.56246 5.61438 5.75266 5.76889 5.85266 6.02305 6.15567 6.19471 6.21860 6.47353 6.67092 6.72841 6.90094 6.94249 6.96337 7.02743 7.16483 7.33165 7.63947 7.69656 7.75752 7.86680 8.00599 8.13564 8.45678 8.75819 8.78432 8.85687 10.10591 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.003279 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.123747 B = 8538.267557 C = 9439.219858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.097 4.097 4 C 0.189 3.811 5 H 0.101 0.899 6 N -0.731 5.731 7 C 0.566 3.434 8 O -0.535 6.535 9 C -0.129 4.129 10 C -0.219 4.219 11 C -0.097 4.097 12 C -0.211 4.211 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.091 4.091 23 C -0.041 4.041 24 C -0.166 4.166 25 C 0.102 3.898 26 N -0.488 5.488 27 C 0.100 3.900 28 C -0.162 4.162 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.399 0.601 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 14.020 -4.967 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.150 4.150 3 C -0.135 4.135 4 C 0.083 3.917 5 H 0.119 0.881 6 N -0.386 5.386 7 C 0.357 3.643 8 O -0.412 6.412 9 C -0.132 4.132 10 C -0.239 4.239 11 C -0.115 4.115 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.488 4.488 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.111 4.111 23 C -0.050 4.050 24 C -0.186 4.186 25 C -0.055 4.055 26 N -0.197 5.197 27 C -0.057 4.057 28 C -0.182 4.182 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.754 14.677 -4.324 15.547 hybrid contribution -0.215 -1.439 0.032 1.455 sum -2.969 13.238 -4.292 14.230 Atomic orbital electron populations 1.23670 0.95842 1.01169 1.03648 1.23025 0.96039 0.98486 0.97413 1.21188 0.97802 0.96490 0.98062 1.19724 0.88842 0.82981 1.00116 0.88125 1.46067 1.18613 1.08610 1.65291 1.18827 0.87354 0.81769 0.76383 1.90721 1.25841 1.81405 1.43246 1.19445 0.94086 0.93959 1.05722 1.20316 0.95465 0.97494 1.10630 1.20430 0.97166 0.93761 1.00147 1.21109 0.97269 0.95262 1.09491 1.17598 0.89821 0.93305 0.89621 1.19585 1.19846 0.93106 1.16305 0.90084 1.25959 0.94837 0.99358 0.94406 1.69777 1.24543 1.34057 1.12327 0.86293 0.78781 0.81982 0.79633 1.19422 1.19930 1.18369 1.21628 1.00125 0.90316 0.99017 1.20440 0.94746 0.95588 0.94176 1.22001 0.97280 0.98707 1.00615 1.22757 0.98159 0.89363 0.95212 1.67679 1.12297 1.34732 1.05037 1.22757 0.91467 0.95349 0.96099 1.22053 1.01930 0.94627 0.99569 0.89339 0.88676 0.86287 0.90868 0.90632 0.76469 0.89417 0.88907 0.88608 0.90420 0.84831 0.84678 0.82586 0.82630 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 14.32 29.01 0.42 -2.41 16 2 C -0.13 -1.99 7.94 -36.02 -0.29 -2.27 16 3 C -0.10 -1.19 5.32 -27.88 -0.15 -1.34 16 4 C 0.19 2.49 2.49 -69.08 -0.17 2.32 16 5 H 0.10 1.51 7.48 -51.93 -0.39 1.12 16 6 N -0.73 -11.24 4.95 -55.87 -0.28 -11.52 16 7 C 0.57 11.50 6.56 -12.31 -0.08 11.42 16 8 O -0.53 -12.28 13.51 5.33 0.07 -12.20 16 9 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 10 C -0.22 -4.43 9.55 -38.92 -0.37 -4.80 16 11 C -0.10 -2.01 10.01 -39.73 -0.40 -2.40 16 12 C -0.21 -4.91 9.78 -38.81 -0.38 -5.29 16 13 C 0.10 2.56 5.57 -106.87 -0.59 1.97 16 14 C -0.46 -11.86 9.05 -37.73 -0.34 -12.20 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.78 -20.37 10.97 55.55 0.61 -19.76 16 18 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.09 -2.34 8.23 -38.44 -0.32 -2.66 16 23 C -0.04 -0.46 4.98 -104.32 -0.52 -0.98 16 24 C -0.17 -1.68 9.15 -39.44 -0.36 -2.04 16 25 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 26 N -0.49 -5.53 10.36 -13.25 -0.14 -5.67 16 27 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 28 C -0.16 -1.63 9.78 -39.44 -0.39 -2.02 16 29 H 0.09 1.02 7.84 -52.49 -0.41 0.61 16 30 H 0.09 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.12 2.19 5.70 -52.49 -0.30 1.89 16 32 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 5.39 4.97 -40.82 -0.20 5.19 16 35 H 0.09 1.45 6.38 -52.49 -0.33 1.11 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.13 3.73 5.76 -52.49 -0.30 3.43 16 40 H 0.14 1.16 7.01 -52.48 -0.37 0.80 16 41 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -29.53 362.44 -9.56 -39.09 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.22 Total: 14.01 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -5.04 Total: -22.88 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.20 Total: -36.95 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.53 -9.56 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734461531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.883 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds