Wall clock time and date at job start Tue Mar 31 2020 14:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99702 * 2 1 4 4 C 1.53001 * 109.46929 * 124.99986 * 3 2 1 5 5 H 1.09007 * 109.47303 * 304.99952 * 4 3 2 6 6 N 1.46497 * 109.47007 * 65.00036 * 4 3 2 7 7 C 1.34779 * 120.00105 * 274.99718 * 6 4 3 8 8 O 1.21545 * 119.99884 * 0.02562 * 7 6 4 9 9 C 1.47883 * 119.99891 * 180.02562 * 7 6 4 10 10 C 1.39922 * 120.02841 * 359.73079 * 9 7 6 11 11 C 1.38325 * 120.35911 * 179.71774 * 10 9 7 12 12 C 1.37749 * 120.41201 * 0.55582 * 11 10 9 13 13 C 1.40753 * 120.04002 * 359.71713 * 12 11 10 14 14 C 1.41436 * 120.17752 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00295 * 334.93446 * 14 13 12 16 16 C 1.39943 * 119.99739 * 154.93158 * 14 13 12 17 17 N 1.30819 * 120.00256 * 342.59316 * 16 14 13 18 18 Si 1.86797 * 119.99605 * 162.58532 * 16 14 13 19 19 H 1.48501 * 109.46956 * 90.00598 * 18 16 14 20 20 H 1.48509 * 109.46938 * 210.00041 * 18 16 14 21 21 H 1.48497 * 109.47761 * 330.00499 * 18 16 14 22 22 C 1.38999 * 120.02385 * 179.97438 * 9 7 6 23 23 C 1.50697 * 109.47064 * 185.00229 * 4 3 2 24 24 C 1.38648 * 120.79120 * 280.02174 * 23 4 3 25 25 C 1.38204 * 119.16591 * 179.97438 * 24 23 4 26 26 N 1.31867 * 120.76478 * 0.02562 * 25 24 23 27 27 C 1.31868 * 121.72246 * 359.97438 * 26 25 24 28 28 C 1.38206 * 120.76759 * 359.97438 * 27 26 25 29 29 H 1.07996 * 120.00225 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99581 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00225 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47245 * 5.00446 * 3 2 1 33 33 H 1.08998 * 109.47320 * 244.99950 * 3 2 1 34 34 H 0.96996 * 120.00117 * 95.00652 * 6 4 3 35 35 H 1.08000 * 119.81671 * 359.97408 * 10 9 7 36 36 H 1.08000 * 119.79456 * 180.25575 * 11 10 9 37 37 H 1.08003 * 119.98157 * 179.74467 * 12 11 10 38 38 H 0.96998 * 120.00674 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.20100 * 359.97438 * 22 9 7 40 40 H 1.08005 * 120.41594 * 359.97438 * 24 23 4 41 41 H 1.08006 * 119.61513 * 180.30088 * 25 24 23 42 42 H 1.08006 * 119.61631 * 179.97438 * 27 26 25 43 43 H 1.07993 * 120.41615 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 2.4882 1.1469 2.1061 6 7 4.0546 0.2970 1.0001 7 6 3.8093 -0.9670 1.3985 8 8 2.7419 -1.2473 1.9079 9 6 4.8388 -2.0127 1.2157 10 6 6.0656 -1.6919 0.6243 11 6 7.0356 -2.6634 0.4553 12 6 6.8012 -3.9601 0.8567 13 6 5.5711 -4.3030 1.4485 14 6 5.3275 -5.6334 1.8623 15 1 5.8576 -6.4500 1.3947 16 6 4.3996 -5.8916 2.8775 17 7 4.0130 -4.9263 3.6713 18 14 3.7130 -7.6146 3.0990 19 1 4.5775 -8.3751 4.0369 20 1 2.3368 -7.5319 3.6509 21 1 3.6789 -8.3067 1.7856 22 6 4.5866 -3.3164 1.6269 23 6 3.6989 2.6841 1.2542 24 6 4.7644 2.9968 0.4241 25 6 5.3479 4.2460 0.5186 26 7 4.9027 5.1345 1.3854 27 6 3.8918 4.8718 2.1904 28 6 3.2580 3.6442 2.1520 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 4.9063 0.5207 0.5934 35 1 6.2577 -0.6792 0.3016 36 1 7.9809 -2.4047 0.0014 37 1 7.5620 -4.7140 0.7177 38 1 3.3696 -5.1051 4.3748 39 1 3.6398 -3.5693 2.0807 40 1 5.1338 2.2732 -0.2876 41 1 6.1752 4.4990 -0.1279 42 1 3.5552 5.6247 2.8877 43 1 2.4304 3.4353 2.8135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734461531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:00 Heat of formation + Delta-G solvation = 18.633177 kcal Electronic energy + Delta-G solvation = -26026.850139 eV Core-core repulsion = 22422.165371 eV Total energy + Delta-G solvation = -3604.684768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64433 -40.66686 -38.96773 -37.32874 -35.64870 -34.85679 -33.51206 -32.15167 -31.84712 -31.27125 -29.60131 -27.20751 -25.75471 -24.67699 -24.10833 -22.84137 -22.15067 -21.18970 -20.76554 -19.57328 -18.34196 -17.69782 -17.28903 -16.89755 -16.74634 -16.55898 -16.47388 -16.20771 -15.41222 -15.38042 -15.06403 -14.83338 -14.51652 -14.49962 -14.32284 -14.24461 -13.82099 -13.58900 -13.43375 -12.98315 -12.79408 -12.70476 -12.55196 -12.31281 -12.18421 -11.92955 -11.83563 -11.51425 -11.07201 -10.94625 -10.59938 -10.53604 -10.47670 -10.09218 -9.87051 -9.47179 -9.38395 -8.67274 -6.38750 0.17525 0.19682 0.38955 1.00728 1.35459 1.41148 1.45174 1.51269 2.10834 2.18029 2.19295 2.78447 2.87129 3.31757 3.61454 3.69751 3.82332 3.97804 4.03982 4.11525 4.17772 4.22475 4.27709 4.41023 4.46643 4.58297 4.67182 4.70193 4.86968 4.89260 4.93374 4.96003 5.06407 5.08377 5.19025 5.25034 5.30930 5.48347 5.52790 5.72912 5.75167 5.85834 5.92169 5.92338 6.04975 6.28643 6.49153 6.66549 6.87737 6.94120 7.02067 7.31528 8.29294 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.003279 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.123747 B = 8538.267557 C = 9439.219858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.087 4.087 4 C 0.193 3.807 5 H 0.080 0.920 6 N -0.709 5.709 7 C 0.565 3.435 8 O -0.569 6.569 9 C -0.139 4.139 10 C -0.198 4.198 11 C -0.096 4.096 12 C -0.218 4.218 13 C 0.067 3.933 14 C -0.499 4.499 15 H 0.082 0.918 16 C 0.031 3.969 17 N -0.824 5.824 18 Si 0.980 3.020 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.255 1.255 22 C -0.128 4.128 23 C -0.052 4.052 24 C -0.166 4.166 25 C 0.098 3.902 26 N -0.509 5.509 27 C 0.096 3.904 28 C -0.165 4.165 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.286 0.714 39 H 0.099 0.901 40 H 0.152 0.848 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 16.455 -6.306 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.171 4.171 3 C -0.125 4.125 4 C 0.088 3.912 5 H 0.098 0.902 6 N -0.363 5.363 7 C 0.355 3.645 8 O -0.449 6.449 9 C -0.142 4.142 10 C -0.218 4.218 11 C -0.114 4.114 12 C -0.238 4.238 13 C 0.065 3.935 14 C -0.528 4.528 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.450 5.450 18 Si 0.800 3.200 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.179 1.179 22 C -0.149 4.149 23 C -0.060 4.060 24 C -0.186 4.186 25 C -0.058 4.058 26 N -0.219 5.219 27 C -0.060 4.060 28 C -0.185 4.185 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.249 0.751 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.169 0.831 41 H 0.198 0.802 42 H 0.197 0.803 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.644 17.154 -5.690 18.147 hybrid contribution -0.480 -1.988 0.355 2.075 sum -2.123 15.166 -5.335 16.217 Atomic orbital electron populations 1.23852 0.95528 1.02171 1.02014 1.22979 0.96654 0.98389 0.99068 1.21141 0.97831 0.95482 0.98076 1.19738 0.88407 0.83296 0.99720 0.90238 1.45832 1.19571 1.07327 1.63609 1.18578 0.86393 0.82974 0.76571 1.90704 1.27029 1.82219 1.44984 1.19793 0.95810 0.93551 1.05046 1.20846 0.93672 0.99679 1.07609 1.20915 0.98941 0.92500 0.98996 1.21409 0.96515 0.97070 1.08836 1.17940 0.91051 0.93704 0.90790 1.19850 1.21754 0.93543 1.17636 0.89945 1.26813 0.94642 1.03319 0.93634 1.69877 1.25624 1.36240 1.13246 0.85235 0.78016 0.76976 0.79728 1.18222 1.19720 1.17909 1.21422 0.99343 0.92318 1.01779 1.20279 0.95686 0.94490 0.95564 1.22171 0.96721 0.99225 1.00517 1.23183 0.98564 0.89013 0.95087 1.67730 1.12928 1.35501 1.05709 1.23152 0.90980 0.95750 0.96138 1.22233 1.02308 0.94558 0.99408 0.86396 0.89595 0.90242 0.88503 0.89266 0.75099 0.84694 0.84444 0.87532 0.90356 0.88296 0.83061 0.80159 0.80336 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.35 14.32 67.78 0.97 -4.38 16 2 C -0.15 -4.61 7.94 25.65 0.20 -4.41 16 3 C -0.09 -1.98 5.32 29.85 0.16 -1.82 16 4 C 0.19 4.81 2.49 44.25 0.11 4.92 16 5 H 0.08 2.37 7.48 -2.38 -0.02 2.35 16 6 N -0.71 -20.84 4.95 -448.94 -2.22 -23.06 16 7 C 0.56 23.36 6.56 86.80 0.57 23.93 16 8 O -0.57 -27.54 13.51 -3.86 -0.05 -27.59 16 9 C -0.14 -6.35 5.87 -20.13 -0.12 -6.47 16 10 C -0.20 -7.52 9.55 22.70 0.22 -7.30 16 11 C -0.10 -3.70 10.01 22.17 0.22 -3.48 16 12 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 13 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 14 C -0.50 -27.07 9.05 23.47 0.21 -26.85 16 15 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 16 C 0.03 1.61 5.14 85.26 0.44 2.05 16 17 N -0.82 -45.74 10.97 21.83 0.24 -45.51 16 18 Si 0.98 39.57 29.59 68.60 2.03 41.60 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.13 -6.98 8.23 23.01 0.19 -6.79 16 23 C -0.05 -1.02 4.98 -19.67 -0.10 -1.12 16 24 C -0.17 -2.80 9.15 22.36 0.20 -2.59 16 25 C 0.10 1.63 11.18 84.68 0.95 2.58 16 26 N -0.51 -10.09 10.36 -195.84 -2.03 -12.12 16 27 C 0.10 1.65 11.18 84.68 0.95 2.60 16 28 C -0.16 -2.95 9.78 22.36 0.22 -2.73 16 29 H 0.12 2.45 7.84 -2.91 -0.02 2.43 16 30 H 0.09 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.08 3.07 5.70 -2.91 -0.02 3.06 16 32 H 0.10 1.77 7.79 -2.39 -0.02 1.75 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 9.82 4.97 -92.71 -0.46 9.36 16 35 H 0.14 3.79 6.38 -2.91 -0.02 3.77 16 36 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 39 H 0.10 6.02 5.76 -2.91 -0.02 6.01 16 40 H 0.15 1.96 7.01 -2.91 -0.02 1.94 16 41 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -69.71 362.44 4.04 -65.67 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.58 Total: 39.26 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 5.50 Total: -38.25 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -4.01 Total: -80.69 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -69.71 4.04 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734461531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.303 kcal (2) G-P(sol) polarization free energy of solvation -69.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds