Wall clock time and date at job start Tue Mar 31 2020 13:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46863 * 2 1 4 4 C 1.33813 * 124.51806 * 90.00526 * 3 2 1 5 5 C 1.37473 * 115.10102 * 179.97438 * 4 3 2 6 6 C 1.36652 * 113.29562 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45871 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00186 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00127 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47213 * 179.97438 * 10 9 7 12 12 H 1.09010 * 109.52277 * 54.92428 * 11 10 9 13 13 C 1.53040 * 109.49747 * 174.99806 * 11 10 9 14 14 C 1.53037 * 109.52613 * 181.31207 * 13 11 10 15 15 C 1.53198 * 109.31616 * 298.64443 * 14 13 11 16 16 N 1.46929 * 108.77101 * 54.63232 * 15 14 13 17 17 C 1.36939 * 120.62776 * 126.41768 * 16 15 14 18 18 H 1.08010 * 119.99610 * 332.55708 * 17 16 15 19 19 C 1.38810 * 120.00240 * 152.55796 * 17 16 15 20 20 N 1.31614 * 119.99902 * 159.28584 * 19 17 16 21 21 Si 1.86796 * 119.99889 * 339.29367 * 19 17 16 22 22 H 1.48498 * 109.47390 * 92.94164 * 21 19 17 23 23 H 1.48501 * 109.47116 * 212.94243 * 21 19 17 24 24 H 1.48504 * 109.47242 * 332.94177 * 21 19 17 25 25 C 1.46922 * 118.74013 * 306.39436 * 16 15 14 26 26 S 1.70616 * 124.52480 * 270.26683 * 3 2 1 27 27 H 1.09000 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47017 * 300.00150 * 1 2 3 29 29 H 1.09005 * 109.47235 * 59.99415 * 1 2 3 30 30 H 1.08999 * 109.47042 * 240.00632 * 2 1 3 31 31 H 1.08992 * 109.46927 * 120.00106 * 2 1 3 32 32 H 1.08003 * 122.45341 * 0.02562 * 4 3 2 33 33 H 1.08004 * 123.35473 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00250 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.46857 * 59.99943 * 10 9 7 36 36 H 1.09002 * 109.47116 * 299.99871 * 10 9 7 37 37 H 1.08997 * 109.45639 * 61.30129 * 13 11 10 38 38 H 1.08991 * 109.46424 * 301.32791 * 13 11 10 39 39 H 1.08996 * 109.49961 * 58.59706 * 14 13 11 40 40 H 1.09007 * 109.49885 * 178.69466 * 14 13 11 41 41 H 1.08992 * 109.58727 * 174.42164 * 15 14 13 42 42 H 1.08996 * 109.58333 * 294.70954 * 15 14 13 43 43 H 0.97006 * 119.99827 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.58531 * 173.39822 * 25 16 15 45 45 H 1.08999 * 109.58549 * 293.67865 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7376 3.4143 0.8776 6 6 2.8477 3.7230 -0.4490 7 6 3.3022 5.0080 -0.9881 8 8 3.6189 5.9074 -0.2319 9 7 3.3684 5.1940 -2.3213 10 6 3.8220 6.4785 -2.8602 11 6 3.8044 6.4250 -4.3891 12 1 2.8110 6.1357 -4.7321 13 6 4.1579 7.8034 -4.9526 14 6 4.1085 7.7590 -6.4815 15 6 5.1401 6.7483 -6.9927 16 7 4.8954 5.4533 -6.3431 17 6 4.7296 4.3181 -7.0908 18 1 4.3408 4.3856 -8.0962 19 6 5.0614 3.0806 -6.5566 20 7 4.5474 1.9831 -7.0699 21 14 6.2370 2.9730 -5.1090 22 1 5.4627 2.9650 -3.8419 23 1 7.0337 1.7239 -5.2101 24 1 7.1494 4.1446 -5.1241 25 6 4.8324 5.3995 -4.8763 26 16 2.3484 2.3348 -1.4057 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1448 1.7373 2.0965 33 1 2.9826 4.1056 1.6704 34 1 3.1156 4.4773 -2.9242 35 1 4.8365 6.6791 -2.5156 36 1 3.1581 7.2717 -2.5163 37 1 5.1611 8.0813 -4.6296 38 1 3.4419 8.5395 -4.5874 39 1 3.1123 7.4571 -6.8047 40 1 4.3376 8.7467 -6.8818 41 1 5.0413 6.6399 -8.0727 42 1 6.1440 7.0969 -6.7507 43 1 4.7795 1.1182 -6.6968 44 1 4.5306 4.4009 -4.5599 45 1 5.8118 5.6343 -4.4596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748320339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:50 Heat of formation + Delta-G solvation = 0.142172 kcal Electronic energy + Delta-G solvation = -25183.662260 eV Core-core repulsion = 21713.619614 eV Total energy + Delta-G solvation = -3470.042647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.75593 -38.33975 -37.75336 -34.84316 -33.91998 -33.11889 -31.25376 -30.60896 -28.94506 -26.22835 -25.33025 -24.79880 -22.67620 -22.45090 -21.40654 -20.89059 -19.57980 -19.08638 -17.90301 -16.88430 -16.31173 -15.75480 -15.60297 -15.17274 -14.88926 -14.37614 -14.30506 -14.10993 -13.89267 -13.46465 -13.32067 -13.30131 -13.08518 -12.82669 -12.50427 -12.44473 -12.14401 -11.98737 -11.73802 -11.63896 -11.48214 -11.33827 -10.86485 -10.81325 -10.62208 -10.54676 -10.15903 -10.07672 -9.85527 -9.72891 -9.49160 -9.05050 -8.70427 -8.67427 -8.62918 -7.01505 -6.00078 -3.35445 0.44473 1.39124 1.82902 2.31096 3.22554 3.25912 3.28399 3.45227 3.48134 4.44704 4.47253 4.75528 4.78764 4.89767 5.00209 5.13835 5.14475 5.21984 5.28248 5.29069 5.40981 5.44804 5.58170 5.59152 5.65582 5.75274 5.82360 5.90617 5.91346 6.00814 6.06186 6.08157 6.11572 6.26755 6.28332 6.31423 6.46123 6.53432 6.56110 6.66558 6.69124 6.94385 7.53633 7.91558 8.21282 8.28421 8.89664 9.67270 10.05851 11.15735 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.004336 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.932919 B = 6456.703270 C = 7872.004406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.194 4.194 4 C -0.157 4.157 5 C -0.054 4.054 6 C -0.272 4.272 7 C 0.590 3.410 8 O -0.538 6.538 9 N -0.721 5.721 10 C 0.127 3.873 11 C -0.120 4.120 12 H 0.081 0.919 13 C -0.100 4.100 14 C -0.134 4.134 15 C 0.146 3.854 16 N -0.605 5.605 17 C -0.260 4.260 18 H 0.087 0.913 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.272 1.272 25 C 0.133 3.867 26 S 0.219 5.781 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.069 0.931 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 1.242 13.467 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.314 4.314 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.392 4.392 7 C 0.376 3.624 8 O -0.417 6.417 9 N -0.372 5.372 10 C 0.003 3.997 11 C -0.141 4.141 12 H 0.099 0.901 13 C -0.139 4.139 14 C -0.174 4.174 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.388 4.388 18 H 0.104 0.896 19 C -0.173 4.173 20 N -0.549 5.549 21 Si 0.705 3.295 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.197 1.197 25 C 0.007 3.993 26 S 0.487 5.513 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.736 1.420 12.360 14.148 hybrid contribution 0.729 -0.354 2.151 2.299 sum -6.007 1.066 14.511 15.742 Atomic orbital electron populations 1.21803 0.94007 1.02194 1.02613 1.20171 0.96420 0.89371 1.03673 1.24340 1.06887 1.02187 0.98011 1.19906 1.05292 0.94132 0.99428 1.20691 0.96860 0.96213 0.95013 1.24647 1.16652 0.99656 0.98255 1.16935 0.77539 0.85616 0.82280 1.90792 1.49942 1.42874 1.58131 1.45996 1.67591 1.17387 1.06265 1.21505 1.00040 0.84241 0.93911 1.21988 1.02181 0.98065 0.91858 0.90100 1.21339 1.01002 0.95178 0.96334 1.21991 1.01288 0.99056 0.95017 1.20959 0.94733 0.85461 0.96832 1.44341 1.83534 1.04686 1.00308 1.18952 1.37070 0.83108 0.99666 0.89574 1.25253 0.98908 0.95246 0.97935 1.69835 1.43919 0.97748 1.43382 0.87090 0.83099 0.76714 0.82611 1.21438 1.23026 1.19657 1.21367 0.95264 0.97364 0.85287 1.83529 1.58606 1.02321 1.06809 0.91835 0.92264 0.92219 0.90353 0.89830 0.84005 0.83110 0.76257 0.91376 0.91309 0.92270 0.92681 0.91916 0.92534 0.91904 0.96001 0.92757 0.91291 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.06 -0.50 6.37 -27.88 -0.18 -0.68 16 3 C -0.19 -2.19 5.53 -35.86 -0.20 -2.39 16 4 C -0.16 -1.73 9.99 -41.41 -0.41 -2.14 16 5 C -0.05 -0.71 10.01 -40.43 -0.40 -1.11 16 6 C -0.27 -4.07 6.45 -36.79 -0.24 -4.31 16 7 C 0.59 10.09 7.78 -12.90 -0.10 9.99 16 8 O -0.54 -10.38 16.84 5.19 0.09 -10.29 16 9 N -0.72 -11.97 5.33 -61.65 -0.33 -12.29 16 10 C 0.13 2.00 5.07 -4.04 -0.02 1.98 16 11 C -0.12 -2.03 2.37 -90.52 -0.21 -2.24 16 12 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 13 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 14 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 15 C 0.15 2.79 6.52 -3.71 -0.02 2.77 16 16 N -0.61 -13.99 2.77 -172.34 -0.48 -14.46 16 17 C -0.26 -7.07 10.03 -15.06 -0.15 -7.22 16 18 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 19 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16 20 N -0.91 -26.90 13.97 55.49 0.78 -26.13 16 21 Si 0.87 22.01 24.35 -169.99 -4.14 17.88 16 22 H -0.29 -6.83 6.62 56.52 0.37 -6.45 16 23 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.27 -6.86 6.64 56.52 0.38 -6.49 16 25 C 0.13 2.80 3.29 -3.73 -0.01 2.79 16 26 S 0.22 2.96 22.10 -107.50 -2.38 0.58 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.40 6.66 6.82 -40.82 -0.28 6.38 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 1.57 3.72 -51.93 -0.19 1.38 16 45 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -31.51 369.37 -10.07 -41.59 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.20 Total: 4.16 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.98 Total: -6.59 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.03 Total: -52.89 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.88 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.38 Total: 0.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.51 -10.07 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748320339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.727 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds