Wall clock time and date at job start Tue Mar 31 2020 13:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46863 * 2 1 4 4 C 1.33813 * 124.51806 * 90.00526 * 3 2 1 5 5 C 1.37473 * 115.10102 * 179.97438 * 4 3 2 6 6 C 1.36652 * 113.29562 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45871 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00186 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00127 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47213 * 179.97438 * 10 9 7 12 12 H 1.09010 * 109.52277 * 54.92428 * 11 10 9 13 13 C 1.53040 * 109.49747 * 174.99806 * 11 10 9 14 14 C 1.53037 * 109.52613 * 181.31207 * 13 11 10 15 15 C 1.53198 * 109.31616 * 298.64443 * 14 13 11 16 16 N 1.46929 * 108.77101 * 54.63232 * 15 14 13 17 17 C 1.36939 * 120.62776 * 126.41768 * 16 15 14 18 18 H 1.08010 * 119.99610 * 332.55708 * 17 16 15 19 19 C 1.38810 * 120.00240 * 152.55796 * 17 16 15 20 20 N 1.31614 * 119.99902 * 159.28584 * 19 17 16 21 21 Si 1.86796 * 119.99889 * 339.29367 * 19 17 16 22 22 H 1.48498 * 109.47390 * 92.94164 * 21 19 17 23 23 H 1.48501 * 109.47116 * 212.94243 * 21 19 17 24 24 H 1.48504 * 109.47242 * 332.94177 * 21 19 17 25 25 C 1.46922 * 118.74013 * 306.39436 * 16 15 14 26 26 S 1.70616 * 124.52480 * 270.26683 * 3 2 1 27 27 H 1.09000 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47017 * 300.00150 * 1 2 3 29 29 H 1.09005 * 109.47235 * 59.99415 * 1 2 3 30 30 H 1.08999 * 109.47042 * 240.00632 * 2 1 3 31 31 H 1.08992 * 109.46927 * 120.00106 * 2 1 3 32 32 H 1.08003 * 122.45341 * 0.02562 * 4 3 2 33 33 H 1.08004 * 123.35473 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00250 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.46857 * 59.99943 * 10 9 7 36 36 H 1.09002 * 109.47116 * 299.99871 * 10 9 7 37 37 H 1.08997 * 109.45639 * 61.30129 * 13 11 10 38 38 H 1.08991 * 109.46424 * 301.32791 * 13 11 10 39 39 H 1.08996 * 109.49961 * 58.59706 * 14 13 11 40 40 H 1.09007 * 109.49885 * 178.69466 * 14 13 11 41 41 H 1.08992 * 109.58727 * 174.42164 * 15 14 13 42 42 H 1.08996 * 109.58333 * 294.70954 * 15 14 13 43 43 H 0.97006 * 119.99827 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.58531 * 173.39822 * 25 16 15 45 45 H 1.08999 * 109.58549 * 293.67865 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7376 3.4143 0.8776 6 6 2.8477 3.7230 -0.4490 7 6 3.3022 5.0080 -0.9881 8 8 3.6189 5.9074 -0.2319 9 7 3.3684 5.1940 -2.3213 10 6 3.8220 6.4785 -2.8602 11 6 3.8044 6.4250 -4.3891 12 1 2.8110 6.1357 -4.7321 13 6 4.1579 7.8034 -4.9526 14 6 4.1085 7.7590 -6.4815 15 6 5.1401 6.7483 -6.9927 16 7 4.8954 5.4533 -6.3431 17 6 4.7296 4.3181 -7.0908 18 1 4.3408 4.3856 -8.0962 19 6 5.0614 3.0806 -6.5566 20 7 4.5474 1.9831 -7.0699 21 14 6.2370 2.9730 -5.1090 22 1 5.4627 2.9650 -3.8419 23 1 7.0337 1.7239 -5.2101 24 1 7.1494 4.1446 -5.1241 25 6 4.8324 5.3995 -4.8763 26 16 2.3484 2.3348 -1.4057 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1448 1.7373 2.0965 33 1 2.9826 4.1056 1.6704 34 1 3.1156 4.4773 -2.9242 35 1 4.8365 6.6791 -2.5156 36 1 3.1581 7.2717 -2.5163 37 1 5.1611 8.0813 -4.6296 38 1 3.4419 8.5395 -4.5874 39 1 3.1123 7.4571 -6.8047 40 1 4.3376 8.7467 -6.8818 41 1 5.0413 6.6399 -8.0727 42 1 6.1440 7.0969 -6.7507 43 1 4.7795 1.1182 -6.6968 44 1 4.5306 4.4009 -4.5599 45 1 5.8118 5.6343 -4.4596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748320339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:49 Heat of formation + Delta-G solvation = -19.023976 kcal Electronic energy + Delta-G solvation = -25184.493367 eV Core-core repulsion = 21713.619614 eV Total energy + Delta-G solvation = -3470.873753 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.04228 -39.69281 -38.86442 -36.30552 -34.88979 -34.69594 -32.94397 -32.19630 -29.94870 -27.46252 -27.13975 -25.86444 -24.18705 -23.32343 -22.76084 -22.22052 -21.01649 -20.24104 -18.99522 -18.82577 -17.52156 -17.23877 -16.88434 -16.58620 -15.96685 -15.93629 -15.52211 -15.23753 -15.12057 -14.95662 -14.76985 -14.53671 -14.41901 -13.97451 -13.88589 -13.64651 -13.40235 -13.33552 -13.11262 -12.86813 -12.60024 -12.45491 -12.22548 -12.13024 -12.08666 -11.72152 -11.70865 -11.63609 -11.46927 -11.29218 -11.17913 -10.67233 -10.33907 -9.72869 -9.65693 -8.93555 -8.18403 -5.48839 -0.58217 0.37479 0.85302 1.23635 1.31617 1.36963 1.43569 2.01285 2.07718 2.36598 3.01717 3.30482 3.62715 3.70254 3.80933 3.88446 3.95203 4.09495 4.28770 4.29701 4.36184 4.41761 4.43857 4.46055 4.56623 4.68831 4.72626 4.75689 4.85865 4.87770 4.96203 4.99792 5.06734 5.08394 5.13822 5.15262 5.21968 5.28757 5.30856 5.32608 5.38907 5.57927 5.86401 6.12263 6.23969 6.90841 6.92180 7.61335 8.02825 9.01391 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.004336 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.932919 B = 6456.703270 C = 7872.004406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.177 4.177 4 C -0.157 4.157 5 C -0.043 4.043 6 C -0.305 4.305 7 C 0.589 3.411 8 O -0.567 6.567 9 N -0.725 5.725 10 C 0.131 3.869 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.098 4.098 14 C -0.124 4.124 15 C 0.137 3.863 16 N -0.620 5.620 17 C -0.248 4.248 18 H 0.056 0.944 19 C -0.023 4.023 20 N -0.949 5.949 21 Si 0.930 3.070 22 H -0.271 1.271 23 H -0.311 1.311 24 H -0.272 1.272 25 C 0.131 3.869 26 S 0.181 5.819 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.048 0.952 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 2.106 15.786 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.297 4.297 4 C -0.186 4.186 5 C -0.077 4.077 6 C -0.425 4.425 7 C 0.377 3.623 8 O -0.449 6.449 9 N -0.375 5.375 10 C 0.007 3.993 11 C -0.128 4.128 12 H 0.092 0.908 13 C -0.136 4.136 14 C -0.163 4.163 15 C 0.012 3.988 16 N -0.344 5.344 17 C -0.378 4.378 18 H 0.074 0.926 19 C -0.218 4.218 20 N -0.595 5.595 21 Si 0.759 3.241 22 H -0.198 1.198 23 H -0.240 1.240 24 H -0.197 1.197 25 C 0.006 3.994 26 S 0.449 5.551 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.193 0.807 33 H 0.176 0.824 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.133 2.332 14.683 16.490 hybrid contribution 0.806 -0.635 1.394 1.731 sum -6.327 1.697 16.077 17.361 Atomic orbital electron populations 1.21800 0.93116 1.03222 1.02294 1.20340 0.97088 0.87708 1.04731 1.24712 1.05292 1.02987 0.96687 1.20193 1.04479 0.93157 1.00813 1.20995 0.95239 0.97092 0.94404 1.24531 1.19383 0.99391 0.99154 1.17209 0.76920 0.86103 0.82093 1.90759 1.51559 1.44006 1.58609 1.46083 1.67453 1.17612 1.06343 1.21505 1.00333 0.84525 0.92900 1.21818 1.00201 0.98195 0.92575 0.90758 1.21377 1.02447 0.94258 0.95493 1.21892 0.99367 0.99388 0.95676 1.21194 0.96540 0.84590 0.96453 1.44492 1.83935 1.04852 1.01141 1.18910 1.35315 0.84725 0.98854 0.92596 1.25726 1.00428 0.95019 1.00625 1.69939 1.45759 0.98236 1.45574 0.86184 0.81093 0.75899 0.80892 1.19769 1.24005 1.19662 1.21355 0.96281 0.97755 0.84046 1.83663 1.59669 1.03009 1.08725 0.90182 0.91677 0.93468 0.90557 0.87465 0.80681 0.82352 0.76441 0.91658 0.89565 0.91426 0.89521 0.92783 0.89098 0.92704 0.95026 0.92881 0.93434 0.95909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.06 -0.89 6.37 29.85 0.19 -0.70 16 3 C -0.18 -3.65 5.53 24.68 0.14 -3.52 16 4 C -0.16 -3.04 9.99 21.08 0.21 -2.83 16 5 C -0.04 -1.05 10.01 21.72 0.22 -0.83 16 6 C -0.30 -8.99 6.45 24.08 0.16 -8.83 16 7 C 0.59 20.00 7.78 86.42 0.67 20.67 16 8 O -0.57 -21.65 16.84 -4.35 -0.07 -21.72 16 9 N -0.72 -23.80 5.33 -467.18 -2.49 -26.29 16 10 C 0.13 3.94 5.07 86.38 0.44 4.38 16 11 C -0.11 -3.45 2.37 -10.73 -0.03 -3.48 16 12 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 13 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 14 C -0.12 -3.54 6.08 30.67 0.19 -3.35 16 15 C 0.14 5.08 6.52 86.36 0.56 5.64 16 16 N -0.62 -28.60 2.77 -699.15 -1.94 -30.53 16 17 C -0.25 -13.87 10.03 84.03 0.84 -13.03 16 18 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 19 C -0.02 -1.30 5.23 84.86 0.44 -0.85 16 20 N -0.95 -58.23 13.97 21.65 0.30 -57.92 16 21 Si 0.93 46.49 24.35 68.60 1.67 48.16 16 22 H -0.27 -12.71 6.62 99.48 0.66 -12.05 16 23 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 24 H -0.27 -13.41 6.64 99.48 0.66 -12.75 16 25 C 0.13 5.43 3.29 86.35 0.28 5.71 16 26 S 0.18 4.86 22.10 -56.49 -1.25 3.61 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 34 H 0.40 13.42 6.82 -92.71 -0.63 12.79 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 44 H 0.05 2.17 3.72 -2.38 -0.01 2.16 16 45 H 0.02 0.97 7.07 -2.39 -0.02 0.95 16 Total: -1.00 -69.77 369.37 1.67 -68.10 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.26 Total: 21.26 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.19 Total: -4.67 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -4.12 Total: -114.75 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.67 Total: 48.16 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.25 Total: 3.61 kcal Total: -69.77 1.67 -68.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748320339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.073 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds