Wall clock time and date at job start Tue Mar 31 2020 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.46946 * 2 1 4 4 C 1.33823 * 124.52155 * 90.00261 * 3 2 1 5 5 C 1.37473 * 115.10003 * 179.97438 * 4 3 2 6 6 C 1.36651 * 113.29752 * 0.02562 * 5 4 3 7 7 C 1.46579 * 125.45750 * 180.02562 * 6 5 4 8 8 O 1.21705 * 120.00353 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99907 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99822 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.53035 * 109.45742 * 295.02689 * 11 10 9 13 13 C 1.53194 * 109.31310 * 178.59816 * 12 11 10 14 14 N 1.46931 * 108.76328 * 54.65188 * 13 12 11 15 15 C 1.36937 * 120.62794 * 126.36317 * 14 13 12 16 16 H 1.07999 * 120.00004 * 331.85810 * 15 14 13 17 17 C 1.38815 * 119.99968 * 151.86207 * 15 14 13 18 18 N 1.31619 * 119.99763 * 343.07263 * 17 15 14 19 19 Si 1.86804 * 119.99894 * 163.07170 * 17 15 14 20 20 H 1.48498 * 109.47033 * 59.99962 * 19 17 15 21 21 H 1.48496 * 109.47137 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46970 * 300.00069 * 19 17 15 23 23 C 1.46920 * 118.73969 * 306.39098 * 14 13 12 24 24 C 1.53040 * 109.45988 * 174.97183 * 11 10 9 25 25 S 1.70620 * 124.52464 * 269.69946 * 3 2 1 26 26 H 1.08998 * 109.47715 * 59.99925 * 1 2 3 27 27 H 1.09003 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47081 * 299.99951 * 1 2 3 29 29 H 1.08993 * 109.47272 * 120.00228 * 2 1 3 30 30 H 1.08996 * 109.46564 * 240.00251 * 2 1 3 31 31 H 1.07996 * 122.44863 * 359.97438 * 4 3 2 32 32 H 1.08002 * 123.35210 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00001 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.47524 * 299.99894 * 10 9 7 35 35 H 1.08995 * 109.47354 * 59.99598 * 10 9 7 36 36 H 1.09001 * 109.45624 * 55.00007 * 11 10 9 37 37 H 1.08997 * 109.49717 * 298.56334 * 12 11 10 38 38 H 1.09000 * 109.50111 * 58.66193 * 12 11 10 39 39 H 1.08997 * 109.59929 * 294.87112 * 13 12 11 40 40 H 1.08994 * 109.70604 * 174.50295 * 13 12 11 41 41 H 0.96998 * 119.99397 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58769 * 293.81291 * 23 14 13 43 43 H 1.09006 * 109.70062 * 173.46486 * 23 14 13 44 44 H 1.09000 * 109.49899 * 301.33247 * 24 11 10 45 45 H 1.08991 * 109.49859 * 61.43678 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7376 3.4142 0.8775 6 6 2.8467 3.7233 -0.4491 7 6 3.3019 5.0080 -0.9882 8 8 3.6213 5.9066 -0.2320 9 7 3.3669 5.1943 -2.3215 10 6 3.8225 6.4782 -2.8604 11 6 3.8019 6.4258 -4.3894 12 6 4.8227 5.3957 -4.8780 13 6 4.7746 5.3207 -6.4073 14 7 4.9711 6.6706 -6.9531 15 6 5.9469 6.9119 -7.8831 16 1 6.8378 6.3016 -7.9018 17 6 5.7911 7.9409 -8.8017 18 7 4.6010 8.4636 -9.0086 19 14 7.2704 8.5837 -9.7440 20 1 7.8684 7.4809 -10.5386 21 1 6.8407 9.6738 -10.6562 22 1 8.2779 9.1068 -8.7867 23 6 4.1013 7.7568 -6.4818 24 6 4.1568 7.8042 -4.9516 25 16 2.3615 2.3300 -1.4057 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 2.1439 1.7376 2.0965 32 1 2.9818 4.1058 1.6703 33 1 3.1121 4.4783 -2.9242 34 1 3.1605 7.2725 -2.5155 35 1 4.8377 6.6768 -2.5169 36 1 2.8064 6.1402 -4.7295 37 1 5.8215 5.6940 -4.5594 38 1 4.5832 4.4187 -4.4583 39 1 3.8052 4.9361 -6.7242 40 1 5.5646 4.6621 -6.7680 41 1 4.4921 9.1824 -9.6508 42 1 3.0770 7.5709 -6.8047 43 1 4.4461 8.7070 -6.8896 44 1 3.4430 8.5417 -4.5844 45 1 5.1619 8.0795 -4.6324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748335235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:57 Heat of formation + Delta-G solvation = -4.940273 kcal Electronic energy + Delta-G solvation = -24289.146694 eV Core-core repulsion = 20818.883656 eV Total energy + Delta-G solvation = -3470.263038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.86758 -38.34427 -37.66361 -34.98122 -34.11035 -32.88541 -30.88517 -29.82233 -29.14777 -26.96625 -25.39911 -23.93772 -22.72541 -22.30953 -21.55889 -20.93560 -19.56008 -19.02511 -18.07497 -16.73603 -16.47897 -15.80731 -15.39018 -15.18265 -14.80201 -14.55146 -14.32754 -14.04303 -13.62897 -13.56107 -13.48926 -13.20388 -13.11570 -12.66719 -12.39461 -12.34551 -12.23617 -11.92099 -11.85402 -11.54341 -11.34350 -11.12614 -10.98505 -10.71578 -10.51681 -10.28572 -10.23069 -10.15412 -9.89850 -9.56062 -9.45708 -9.16263 -8.89107 -8.83730 -8.46230 -6.66681 -5.78690 -3.21091 0.25011 1.16952 1.59616 2.13942 3.11301 3.12612 3.38758 3.44584 3.46073 4.25057 4.50061 4.57792 4.70377 4.80986 4.96094 5.09810 5.11010 5.21555 5.26766 5.36680 5.39269 5.41111 5.47886 5.59530 5.72064 5.73330 5.84900 5.86254 5.93424 6.03875 6.08397 6.12984 6.31557 6.37102 6.44916 6.59656 6.68154 6.75620 6.80850 6.97431 7.35706 7.42259 7.65934 7.79660 8.09422 8.45770 9.21935 9.85385 10.42158 11.29881 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.002355 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.019110 B =11889.197697 C =12495.982286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.193 4.193 4 C -0.154 4.154 5 C -0.054 4.054 6 C -0.266 4.266 7 C 0.587 3.413 8 O -0.534 6.534 9 N -0.720 5.720 10 C 0.124 3.876 11 C -0.091 4.091 12 C -0.128 4.128 13 C 0.146 3.854 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 S 0.204 5.796 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.397 0.603 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -15.620 18.641 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.313 4.313 4 C -0.185 4.185 5 C -0.087 4.087 6 C -0.386 4.386 7 C 0.373 3.627 8 O -0.413 6.413 9 N -0.371 5.371 10 C 0.001 3.999 11 C -0.110 4.110 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.172 4.172 25 S 0.472 5.528 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.966 -15.111 17.445 24.416 hybrid contribution 0.664 0.279 0.828 1.097 sum -7.303 -14.832 18.273 24.642 Atomic orbital electron populations 1.21808 0.93976 1.02241 1.02679 1.20163 0.96443 0.89331 1.03608 1.24284 1.07011 1.02147 0.97829 1.19946 1.04824 0.94159 0.99555 1.20744 0.96582 0.96193 0.95209 1.24655 1.16410 0.99427 0.98133 1.16963 0.77768 0.85571 0.82442 1.90826 1.49495 1.42834 1.58118 1.45988 1.67602 1.17501 1.05977 1.21649 1.00043 0.83794 0.94419 1.21328 0.99862 0.98387 0.91399 1.22086 0.98857 0.96582 0.99205 1.20884 0.98168 0.88630 0.90401 1.44038 1.38935 1.02076 1.46441 1.19138 0.96045 1.15607 1.07446 0.91808 1.25044 0.96199 1.01293 0.97113 1.70018 1.20268 1.28159 1.36332 0.86372 0.82498 0.78494 0.79424 1.20908 1.21642 1.21022 1.20761 0.93166 0.94205 0.87285 1.22178 1.00602 0.93717 1.00735 1.83081 1.59755 1.02449 1.07540 0.92267 0.91811 0.92180 0.89781 0.90496 0.83927 0.83009 0.76784 0.91467 0.91278 0.91255 0.92058 0.93592 0.96593 0.92844 0.93584 0.96436 0.89379 0.93000 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.06 -0.32 6.36 -27.89 -0.18 -0.50 16 3 C -0.19 -1.54 5.53 -35.86 -0.20 -1.74 16 4 C -0.15 -1.29 10.00 -41.41 -0.41 -1.71 16 5 C -0.05 -0.57 10.01 -40.43 -0.40 -0.97 16 6 C -0.27 -3.12 6.45 -36.79 -0.24 -3.36 16 7 C 0.59 8.44 7.78 -12.90 -0.10 8.34 16 8 O -0.53 -9.46 16.84 5.18 0.09 -9.37 16 9 N -0.72 -9.50 5.27 -61.65 -0.32 -9.82 16 10 C 0.12 1.80 5.06 -4.04 -0.02 1.78 16 11 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 12 C -0.13 -2.11 5.25 -26.61 -0.14 -2.25 16 13 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 14 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 15 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 16 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 19 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.17 4.01 5.30 -3.72 -0.02 3.99 16 24 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 25 S 0.20 1.82 22.10 -107.50 -2.38 -0.55 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.40 4.53 6.76 -40.82 -0.28 4.26 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -31.42 375.58 -11.08 -42.50 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.26 Total: 0.71 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.94 Total: -5.18 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.22 Total: -50.40 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.38 Total: -0.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.42 -11.08 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748335235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds