Wall clock time and date at job start Tue Mar 31 2020 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.46946 * 2 1 4 4 C 1.33823 * 124.52155 * 90.00261 * 3 2 1 5 5 C 1.37473 * 115.10003 * 179.97438 * 4 3 2 6 6 C 1.36651 * 113.29752 * 0.02562 * 5 4 3 7 7 C 1.46579 * 125.45750 * 180.02562 * 6 5 4 8 8 O 1.21705 * 120.00353 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99907 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99822 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.53035 * 109.45742 * 295.02689 * 11 10 9 13 13 C 1.53194 * 109.31310 * 178.59816 * 12 11 10 14 14 N 1.46931 * 108.76328 * 54.65188 * 13 12 11 15 15 C 1.36937 * 120.62794 * 126.36317 * 14 13 12 16 16 H 1.07999 * 120.00004 * 331.85810 * 15 14 13 17 17 C 1.38815 * 119.99968 * 151.86207 * 15 14 13 18 18 N 1.31619 * 119.99763 * 343.07263 * 17 15 14 19 19 Si 1.86804 * 119.99894 * 163.07170 * 17 15 14 20 20 H 1.48498 * 109.47033 * 59.99962 * 19 17 15 21 21 H 1.48496 * 109.47137 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46970 * 300.00069 * 19 17 15 23 23 C 1.46920 * 118.73969 * 306.39098 * 14 13 12 24 24 C 1.53040 * 109.45988 * 174.97183 * 11 10 9 25 25 S 1.70620 * 124.52464 * 269.69946 * 3 2 1 26 26 H 1.08998 * 109.47715 * 59.99925 * 1 2 3 27 27 H 1.09003 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47081 * 299.99951 * 1 2 3 29 29 H 1.08993 * 109.47272 * 120.00228 * 2 1 3 30 30 H 1.08996 * 109.46564 * 240.00251 * 2 1 3 31 31 H 1.07996 * 122.44863 * 359.97438 * 4 3 2 32 32 H 1.08002 * 123.35210 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00001 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.47524 * 299.99894 * 10 9 7 35 35 H 1.08995 * 109.47354 * 59.99598 * 10 9 7 36 36 H 1.09001 * 109.45624 * 55.00007 * 11 10 9 37 37 H 1.08997 * 109.49717 * 298.56334 * 12 11 10 38 38 H 1.09000 * 109.50111 * 58.66193 * 12 11 10 39 39 H 1.08997 * 109.59929 * 294.87112 * 13 12 11 40 40 H 1.08994 * 109.70604 * 174.50295 * 13 12 11 41 41 H 0.96998 * 119.99397 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58769 * 293.81291 * 23 14 13 43 43 H 1.09006 * 109.70062 * 173.46486 * 23 14 13 44 44 H 1.09000 * 109.49899 * 301.33247 * 24 11 10 45 45 H 1.08991 * 109.49859 * 61.43678 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7376 3.4142 0.8775 6 6 2.8467 3.7233 -0.4491 7 6 3.3019 5.0080 -0.9882 8 8 3.6213 5.9066 -0.2320 9 7 3.3669 5.1943 -2.3215 10 6 3.8225 6.4782 -2.8604 11 6 3.8019 6.4258 -4.3894 12 6 4.8227 5.3957 -4.8780 13 6 4.7746 5.3207 -6.4073 14 7 4.9711 6.6706 -6.9531 15 6 5.9469 6.9119 -7.8831 16 1 6.8378 6.3016 -7.9018 17 6 5.7911 7.9409 -8.8017 18 7 4.6010 8.4636 -9.0086 19 14 7.2704 8.5837 -9.7440 20 1 7.8684 7.4809 -10.5386 21 1 6.8407 9.6738 -10.6562 22 1 8.2779 9.1068 -8.7867 23 6 4.1013 7.7568 -6.4818 24 6 4.1568 7.8042 -4.9516 25 16 2.3615 2.3300 -1.4057 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 2.1439 1.7376 2.0965 32 1 2.9818 4.1058 1.6703 33 1 3.1121 4.4783 -2.9242 34 1 3.1605 7.2725 -2.5155 35 1 4.8377 6.6768 -2.5169 36 1 2.8064 6.1402 -4.7295 37 1 5.8215 5.6940 -4.5594 38 1 4.5832 4.4187 -4.4583 39 1 3.8052 4.9361 -6.7242 40 1 5.5646 4.6621 -6.7680 41 1 4.4921 9.1824 -9.6508 42 1 3.0770 7.5709 -6.8047 43 1 4.4461 8.7070 -6.8896 44 1 3.4430 8.5417 -4.5844 45 1 5.1619 8.0795 -4.6324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748335235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:57 Heat of formation + Delta-G solvation = -22.647551 kcal Electronic energy + Delta-G solvation = -24289.914539 eV Core-core repulsion = 20818.883656 eV Total energy + Delta-G solvation = -3471.030883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97054 -39.48618 -38.78520 -36.44640 -34.71766 -34.47724 -32.60139 -31.44943 -30.06129 -28.33974 -26.42941 -25.41947 -23.88142 -23.27059 -22.88911 -22.19162 -20.87468 -20.19420 -18.99447 -18.58407 -17.34428 -16.83396 -16.79352 -16.51201 -15.95906 -15.67511 -15.31259 -15.24480 -15.08758 -14.88697 -14.72381 -14.36314 -14.08457 -13.86946 -13.79804 -13.45624 -13.27523 -13.01276 -12.87755 -12.76091 -12.55626 -12.41421 -12.28799 -12.07351 -12.02489 -11.85285 -11.69162 -11.64607 -11.37542 -11.14124 -11.08615 -10.52359 -10.27576 -9.64848 -9.54412 -8.66353 -7.86799 -5.31663 -0.52694 0.44692 0.89067 1.37284 1.46599 1.49196 1.55706 2.06002 2.13694 2.51781 3.27601 3.68637 3.70421 3.75250 3.85198 3.92542 4.05724 4.14920 4.34310 4.41499 4.48098 4.49481 4.52754 4.66082 4.71060 4.77779 4.80731 4.92463 4.93038 5.00495 5.05885 5.10454 5.14290 5.21080 5.25011 5.27175 5.30541 5.35813 5.41819 5.43018 5.54923 5.66162 5.78753 6.36923 6.40643 7.03492 7.16422 7.88559 8.39424 9.19316 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.002355 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.019110 B =11889.197697 C =12495.982286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.162 4.162 5 C -0.052 4.052 6 C -0.304 4.304 7 C 0.587 3.413 8 O -0.577 6.577 9 N -0.713 5.713 10 C 0.136 3.864 11 C -0.079 4.079 12 C -0.116 4.116 13 C 0.141 3.859 14 N -0.612 5.612 15 C -0.263 4.263 16 H 0.065 0.935 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.280 1.280 23 C 0.177 3.823 24 C -0.122 4.122 25 S 0.227 5.773 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.408 0.592 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.250 0.750 42 H -0.001 1.001 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -18.063 19.982 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.302 4.302 4 C -0.192 4.192 5 C -0.086 4.086 6 C -0.424 4.424 7 C 0.375 3.625 8 O -0.459 6.459 9 N -0.364 5.364 10 C 0.012 3.988 11 C -0.098 4.098 12 C -0.155 4.155 13 C 0.015 3.985 14 N -0.336 5.336 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.206 1.206 23 C 0.051 3.949 24 C -0.161 4.161 25 S 0.496 5.504 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.255 -17.600 18.784 27.032 hybrid contribution 0.693 0.907 0.434 1.222 sum -7.562 -16.692 19.218 26.555 Atomic orbital electron populations 1.21813 0.93502 1.03111 1.02253 1.20315 0.96720 0.87765 1.04894 1.24708 1.05176 1.03040 0.97238 1.20122 1.04848 0.93292 1.00903 1.20939 0.95835 0.97059 0.94817 1.24478 1.19118 0.99589 0.99180 1.17302 0.76900 0.86105 0.82243 1.90794 1.51558 1.44524 1.59006 1.45848 1.67271 1.17229 1.06008 1.21370 0.99723 0.84629 0.93044 1.21165 0.99985 0.96432 0.92213 1.21941 0.98650 0.98600 0.96277 1.21059 0.98183 0.86487 0.92728 1.44321 1.38687 1.04093 1.46453 1.19465 0.96734 1.15497 1.07608 0.91780 1.25779 0.98541 1.01857 0.98464 1.70168 1.22053 1.28640 1.37176 0.85379 0.79449 0.77761 0.78097 1.20059 1.22033 1.20624 1.20567 0.91629 0.92372 0.90285 1.21977 1.00891 0.96171 0.97084 1.82935 1.59116 1.00989 1.07404 0.92985 0.90359 0.92351 0.88115 0.89627 0.81613 0.83433 0.75584 0.91451 0.92095 0.90432 0.92953 0.90124 0.96301 0.92909 0.94127 0.98259 0.92979 0.91138 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.38 16 2 C -0.06 -0.46 6.36 29.85 0.19 -0.27 16 3 C -0.18 -2.40 5.53 24.68 0.14 -2.26 16 4 C -0.16 -2.33 10.00 21.08 0.21 -2.12 16 5 C -0.05 -1.04 10.01 21.72 0.22 -0.82 16 6 C -0.30 -6.78 6.45 24.08 0.16 -6.62 16 7 C 0.59 16.49 7.78 86.42 0.67 17.16 16 8 O -0.58 -20.54 16.84 -4.37 -0.07 -20.62 16 9 N -0.71 -17.73 5.27 -467.16 -2.46 -20.19 16 10 C 0.14 3.76 5.06 86.38 0.44 4.20 16 11 C -0.08 -2.38 2.19 -10.77 -0.02 -2.41 16 12 C -0.12 -3.61 5.25 30.67 0.16 -3.44 16 13 C 0.14 5.59 6.52 86.36 0.56 6.15 16 14 N -0.61 -30.47 2.99 -699.10 -2.09 -32.56 16 15 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 16 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 17 C -0.05 -2.86 4.92 84.86 0.42 -2.45 16 18 N -0.93 -55.41 11.19 21.65 0.24 -55.17 16 19 Si 0.96 45.13 29.59 68.60 2.03 47.16 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.18 8.46 5.30 86.36 0.46 8.92 16 24 C -0.12 -4.45 5.36 30.67 0.16 -4.28 16 25 S 0.23 3.56 22.10 -56.49 -1.25 2.31 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 33 H 0.41 8.37 6.76 -92.71 -0.63 7.74 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.98 7.15 -2.39 -0.02 1.96 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.05 2.85 6.06 -2.38 -0.01 2.83 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.35 375.58 2.02 -67.32 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.35 Total: 14.05 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.28 Total: -2.31 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -4.31 Total: -107.91 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.07 Total: -20.62 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.25 Total: 2.31 kcal Total: -69.35 2.02 -67.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748335235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.674 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds