Wall clock time and date at job start Tue Mar 31 2020 14:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46936 * 2 1 4 4 C 1.52995 * 109.47182 * 119.99763 * 2 1 3 5 5 N 1.46500 * 109.47180 * 174.11404 * 4 2 1 6 6 C 1.46498 * 119.99863 * 276.68470 * 5 4 2 7 7 C 1.50697 * 109.47639 * 270.00041 * 6 5 4 8 8 H 1.08008 * 119.99687 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00728 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99706 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00155 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47120 * 60.00319 * 11 9 7 13 13 H 1.48504 * 109.47062 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47468 * 300.00177 * 11 9 7 15 15 C 1.34773 * 120.00293 * 96.68222 * 5 4 2 16 16 O 1.21287 * 120.00044 * 185.40018 * 15 5 4 17 17 C 1.50696 * 119.99983 * 5.40714 * 15 5 4 18 18 S 1.81398 * 109.47051 * 174.69165 * 17 15 5 19 19 C 1.81401 * 103.00019 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.47346 * 180.02562 * 19 18 17 21 21 C 1.38679 * 120.42017 * 270.25117 * 20 19 18 22 22 C 1.38631 * 118.42232 * 180.24027 * 21 20 19 23 23 C 1.38228 * 119.15781 * 359.75256 * 22 21 20 24 24 N 1.31852 * 120.76507 * 359.97438 * 23 22 21 25 25 C 1.31878 * 121.72743 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.46928 * 300.00147 * 1 2 3 27 27 H 1.08998 * 109.47017 * 60.00465 * 1 2 3 28 28 H 1.09001 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47294 * 240.00244 * 2 1 3 30 30 H 1.09006 * 109.47040 * 304.70413 * 3 2 1 31 31 H 1.09002 * 109.47167 * 64.70447 * 3 2 1 32 32 H 1.09001 * 109.47144 * 184.71069 * 3 2 1 33 33 H 1.08998 * 109.47368 * 54.11178 * 4 2 1 34 34 H 1.08998 * 109.47379 * 294.11033 * 4 2 1 35 35 H 1.09002 * 109.47306 * 29.99756 * 6 5 4 36 36 H 1.08999 * 109.47403 * 149.99618 * 6 5 4 37 37 H 0.96997 * 119.99775 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47344 * 54.69364 * 17 15 5 39 39 H 1.08991 * 109.47221 * 294.69262 * 17 15 5 40 40 H 1.09003 * 109.47354 * 59.99893 * 19 18 17 41 41 H 1.08996 * 109.47317 * 299.99872 * 19 18 17 42 42 H 1.07998 * 120.78743 * 359.97432 * 21 20 19 43 43 H 1.07996 * 120.41788 * 179.72957 * 22 21 20 44 44 H 1.08004 * 119.61183 * 180.02562 * 23 22 21 45 45 H 1.08008 * 119.61890 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4981 -0.8451 1.1805 6 6 4.1051 -1.9447 0.4264 7 6 4.2996 -3.1304 1.3359 8 1 4.0013 -3.0707 2.3723 9 6 4.8583 -4.2914 0.8452 10 7 5.2220 -4.3640 -0.4166 11 14 5.1000 -5.7609 1.9728 12 1 3.7850 -6.1945 2.5096 13 1 5.7151 -6.8756 1.2084 14 1 5.9924 -5.3806 3.0971 15 6 4.2812 0.0526 1.8110 16 8 5.4856 0.0085 1.6743 17 6 3.6605 1.1109 2.6858 18 16 4.9695 2.0579 3.5106 19 6 4.0408 3.2619 4.4998 20 6 5.0038 4.1392 5.2574 21 6 5.4360 3.7769 6.5243 22 6 6.3181 4.6172 7.1859 23 6 6.7385 5.7774 6.5631 24 7 6.3108 6.0874 5.3550 25 6 5.4718 5.3120 4.6962 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6094 1.9801 -0.8449 31 1 1.7471 1.9315 0.9291 32 1 3.1267 1.4437 -0.0844 33 1 1.5932 -1.7139 1.3036 34 1 1.7654 -0.1501 2.1361 35 1 3.4506 -2.2237 -0.3993 36 1 5.0705 -1.6262 0.0331 37 1 5.6147 -5.1809 -0.7619 38 1 3.0273 0.6370 3.4359 39 1 3.0580 1.7814 2.0731 40 1 3.3978 2.7344 5.2045 41 1 3.4291 3.8785 3.8413 42 1 5.0903 2.8640 6.9863 43 1 6.6720 4.3686 8.1755 44 1 7.4260 6.4371 7.0716 45 1 5.1431 5.5992 3.7082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751374082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:47 Heat of formation + Delta-G solvation = -9.940880 kcal Electronic energy + Delta-G solvation = -24359.308093 eV Core-core repulsion = 20888.828213 eV Total energy + Delta-G solvation = -3470.479881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.34386 -39.28339 -36.37976 -33.88776 -33.74332 -32.34866 -32.13499 -30.20464 -27.71816 -27.23835 -26.96041 -25.49581 -23.80630 -22.88968 -22.34405 -20.30270 -18.54751 -17.36217 -16.73148 -16.64908 -16.49692 -16.30971 -15.42736 -15.36635 -15.19589 -14.55454 -14.40657 -14.04794 -13.76061 -13.72446 -13.39426 -13.28884 -13.20664 -12.92290 -12.65306 -12.36483 -12.20252 -11.93277 -11.80727 -11.64365 -11.30952 -10.98344 -10.97124 -10.80469 -10.58185 -10.54155 -10.16325 -10.12575 -9.85615 -9.69632 -9.66384 -9.10449 -9.06555 -8.45210 -7.74057 -7.53725 -6.06534 -4.11737 0.63178 1.02470 1.75350 2.58097 3.26894 3.30437 3.35221 3.38965 3.63363 3.86489 4.15440 4.42505 4.44275 4.47441 4.71371 4.73555 4.87779 4.96299 5.03365 5.04588 5.15140 5.18782 5.27106 5.31006 5.33519 5.38655 5.51839 5.58323 5.63892 5.77365 5.85259 5.88131 5.97522 5.99887 6.11183 6.19994 6.38128 6.43057 6.48251 6.99758 7.41488 7.48336 7.72579 7.89298 8.20053 8.31689 8.84153 8.99876 9.53421 11.01505 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.003115 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.937237 B = 8985.422967 C =10564.382509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.149 4.149 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.248 3.752 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.525 3.475 16 O -0.522 6.522 17 C -0.137 4.137 18 S -0.168 6.168 19 C -0.070 4.070 20 C -0.117 4.117 21 C -0.059 4.059 22 C -0.172 4.172 23 C 0.097 3.903 24 N -0.485 5.485 25 C 0.117 3.883 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 17.428 10.467 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.206 4.206 4 C -0.010 4.010 5 N -0.322 5.322 6 C 0.129 3.871 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.309 3.691 16 O -0.399 6.399 17 C -0.288 4.288 18 S 0.060 5.940 19 C -0.218 4.218 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.192 4.192 23 C -0.061 4.061 24 N -0.193 5.193 25 C -0.042 4.042 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.173 0.827 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.365 17.853 9.726 21.304 hybrid contribution -1.651 -1.684 1.089 2.597 sum -8.016 16.169 10.815 21.040 Atomic orbital electron populations 1.21762 0.94948 1.01924 1.01376 1.21568 0.95464 0.96432 1.00197 1.21972 1.01653 0.96060 1.00914 1.21577 0.81700 1.01259 0.96490 1.48115 1.05191 1.27792 1.51146 1.19286 0.94571 0.82278 0.90935 1.21386 1.41492 0.97285 0.96669 0.92534 1.24923 0.95142 0.98738 0.95177 1.69921 1.41832 1.28002 1.13484 0.86564 0.78429 0.81754 0.80722 1.20251 1.21144 1.20134 1.19313 0.87194 0.81771 0.80815 1.90722 1.14009 1.72634 1.62486 1.23953 1.01273 1.01037 1.02511 1.87889 1.12026 1.38232 1.55834 1.22346 0.99139 0.99198 1.01164 1.20224 0.99877 0.96551 0.95387 1.21541 0.94675 0.98780 0.93638 1.22150 0.99203 0.96122 1.01748 1.22810 0.97113 0.95050 0.91096 1.67726 1.10640 1.32394 1.08503 1.22701 0.92306 0.90057 0.99170 0.92962 0.92746 0.92362 0.90201 0.92706 0.93111 0.92344 0.89956 0.91715 0.94857 0.93701 0.92614 0.88011 0.87110 0.89097 0.88959 0.84503 0.84582 0.82722 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.12 -1.54 3.11 -90.62 -0.28 -1.82 16 3 C -0.15 -1.79 7.59 37.16 0.28 -1.51 16 4 C 0.11 1.75 4.89 -4.04 -0.02 1.73 16 5 N -0.59 -12.04 2.26 -175.07 -0.40 -12.44 16 6 C 0.25 6.37 5.22 -5.20 -0.03 6.35 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 11 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.52 10.75 6.47 -10.99 -0.07 10.68 16 16 O -0.52 -13.28 15.43 5.55 0.09 -13.19 16 17 C -0.14 -2.00 4.78 36.00 0.17 -1.83 16 18 S -0.17 -2.52 20.86 -107.50 -2.24 -4.77 16 19 C -0.07 -0.69 6.09 36.00 0.22 -0.47 16 20 C -0.12 -1.21 5.16 -104.48 -0.54 -1.75 16 21 C -0.06 -0.55 9.86 -39.27 -0.39 -0.94 16 22 C -0.17 -1.45 10.11 -39.44 -0.40 -1.85 16 23 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 24 N -0.48 -5.58 10.36 -13.25 -0.14 -5.72 16 25 C 0.12 1.26 10.86 -17.55 -0.19 1.07 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.51 6.49 -51.93 -0.34 0.17 16 32 H 0.06 0.85 6.87 -51.93 -0.36 0.49 16 33 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 34 H 0.06 0.81 6.10 -51.93 -0.32 0.49 16 35 H 0.03 0.86 7.94 -51.93 -0.41 0.45 16 36 H 0.04 1.32 7.35 -51.93 -0.38 0.94 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 1.29 7.37 -51.92 -0.38 0.91 16 39 H 0.11 1.34 4.80 -51.93 -0.25 1.09 16 40 H 0.09 0.76 8.10 -51.92 -0.42 0.34 16 41 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -34.42 382.58 -9.77 -44.19 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.04 Total: -0.64 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.52 Total: -4.23 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.20 Total: -43.87 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.24 Total: -4.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.42 -9.77 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751374082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.247 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds