Wall clock time and date at job start Tue Mar 31 2020 14:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47415 * 2 1 4 4 C 1.53005 * 109.47418 * 120.00159 * 2 1 3 5 5 N 1.46503 * 109.46879 * 64.99621 * 4 2 1 6 6 C 1.46499 * 120.00166 * 270.00572 * 5 4 2 7 7 C 1.50705 * 109.46942 * 270.00339 * 6 5 4 8 8 H 1.07994 * 120.00053 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99803 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99805 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99692 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46802 * 89.99859 * 11 9 7 13 13 H 1.48503 * 109.46973 * 209.99644 * 11 9 7 14 14 H 1.48498 * 109.47384 * 329.99948 * 11 9 7 15 15 C 1.34770 * 119.99917 * 90.00540 * 5 4 2 16 16 O 1.21284 * 120.00348 * 179.97438 * 15 5 4 17 17 C 1.50704 * 120.00023 * 0.02562 * 15 5 4 18 18 S 1.81400 * 109.47417 * 180.02562 * 17 15 5 19 19 C 1.81392 * 103.00097 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47205 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.62264 * 270.02492 * 20 19 18 22 22 C 1.38628 * 119.16031 * 179.97438 * 21 20 19 23 23 C 1.38672 * 118.42475 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.15778 * 0.02562 * 23 22 21 25 25 N 1.31856 * 119.61279 * 89.99963 * 20 19 18 26 26 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47408 * 300.00243 * 1 2 3 28 28 H 1.09004 * 109.46954 * 60.00079 * 1 2 3 29 29 H 1.09005 * 109.47917 * 239.99924 * 2 1 3 30 30 H 1.08995 * 109.47119 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47168 * 299.99898 * 3 2 1 32 32 H 1.09001 * 109.46435 * 59.99867 * 3 2 1 33 33 H 1.09008 * 109.46687 * 305.00001 * 4 2 1 34 34 H 1.08994 * 109.47568 * 185.00059 * 4 2 1 35 35 H 1.08995 * 109.47301 * 29.99831 * 6 5 4 36 36 H 1.08991 * 109.47247 * 150.00187 * 6 5 4 37 37 H 0.97001 * 119.99716 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47206 * 59.99686 * 17 15 5 39 39 H 1.09005 * 109.47020 * 300.00250 * 17 15 5 40 40 H 1.09004 * 109.47102 * 59.99862 * 19 18 17 41 41 H 1.08998 * 109.47631 * 299.99874 * 19 18 17 42 42 H 1.07995 * 120.41821 * 359.95030 * 21 20 19 43 43 H 1.08006 * 120.78822 * 180.02562 * 22 21 20 44 44 H 1.07993 * 120.42192 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.60956 * 180.27218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3745 -2.5660 1.7612 7 6 0.5715 -2.9408 3.2075 8 1 1.5507 -2.8645 3.6565 9 6 -0.4983 -3.3822 3.9571 10 7 -1.6906 -3.4755 3.4101 11 14 -0.2539 -3.8475 5.7497 12 1 -0.4667 -2.6522 6.6048 13 1 -1.2282 -4.9038 6.1241 14 1 1.1275 -4.3563 5.9452 15 6 2.4714 -3.0331 0.6116 16 8 2.1507 -4.2018 0.5633 17 6 3.7862 -2.5877 0.0250 18 16 4.6521 -4.0197 -0.6751 19 6 6.1838 -3.2943 -1.3216 20 6 7.0274 -4.3758 -1.9460 21 6 7.9466 -5.0581 -1.1714 22 6 8.7172 -6.0515 -1.7554 23 6 8.5332 -6.3232 -3.1028 24 6 7.5948 -5.5994 -3.8135 25 7 6.8796 -4.6606 -3.2250 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 -0.3485 -1.7532 1.6918 36 1 0.0042 -3.4297 1.2092 37 1 -2.4432 -3.7857 3.9376 38 1 4.3991 -2.1384 0.8065 39 1 3.6038 -1.8541 -0.7604 40 1 6.7371 -2.8275 -0.5067 41 1 5.9412 -2.5430 -2.0731 42 1 8.0633 -4.8200 -0.1245 43 1 9.4430 -6.6014 -1.1747 44 1 9.1164 -7.0901 -3.5906 45 1 7.4424 -5.8080 -4.8622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751380982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:43 Heat of formation + Delta-G solvation = -8.404652 kcal Electronic energy + Delta-G solvation = -24267.335113 eV Core-core repulsion = 20796.921848 eV Total energy + Delta-G solvation = -3470.413265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35123 -39.18629 -36.38696 -33.59013 -33.27774 -32.52511 -32.35535 -30.12335 -27.99691 -27.21902 -26.84682 -25.40587 -23.74885 -22.81518 -22.30720 -20.27980 -18.57206 -17.19117 -16.61243 -16.58707 -16.31583 -16.27716 -15.64716 -15.45119 -14.97195 -14.53812 -14.43211 -14.03673 -13.82418 -13.67705 -13.47053 -13.16722 -12.95702 -12.62932 -12.46844 -12.32234 -12.09891 -11.92844 -11.84184 -11.55442 -11.36094 -10.99468 -10.92212 -10.72471 -10.49188 -10.30201 -10.14022 -10.12929 -9.90973 -9.66667 -9.59166 -9.11731 -9.02900 -8.41671 -7.69241 -7.46547 -6.03667 -4.08034 0.64791 1.03542 1.75692 2.62237 3.30112 3.32164 3.37818 3.42877 3.65504 3.90193 3.96387 4.40535 4.45433 4.60283 4.79708 4.86368 4.90224 5.04237 5.08550 5.10189 5.14999 5.21593 5.30923 5.34505 5.43246 5.44139 5.51908 5.66757 5.79811 5.85665 5.85709 5.92171 6.07864 6.12773 6.14245 6.28793 6.42900 6.52951 6.68090 7.05858 7.43651 7.52798 7.75999 7.92430 8.24116 8.35253 8.88310 9.03938 9.56722 11.04326 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.003021 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.612607 B = 9264.838906 C =10754.303127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.590 5.590 6 C 0.244 3.756 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.522 3.478 16 O -0.520 6.520 17 C -0.127 4.127 18 S -0.157 6.157 19 C -0.067 4.067 20 C 0.149 3.851 21 C -0.154 4.154 22 C -0.075 4.075 23 C -0.175 4.175 24 C 0.102 3.898 25 N -0.472 5.472 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.171 4.786 -11.407 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.010 4.010 5 N -0.321 5.321 6 C 0.125 3.875 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.306 3.694 16 O -0.396 6.396 17 C -0.279 4.279 18 S 0.070 5.930 19 C -0.216 4.216 20 C 0.010 3.990 21 C -0.176 4.176 22 C -0.101 4.101 23 C -0.195 4.195 24 C -0.056 4.056 25 N -0.181 5.181 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 17.800 3.543 -11.868 21.685 hybrid contribution 1.106 0.668 1.587 2.046 sum 18.906 4.212 -10.282 21.929 Atomic orbital electron populations 1.21927 0.94469 1.03173 1.01041 1.21596 0.97294 0.95802 0.98737 1.21782 1.00442 0.96008 1.01888 1.21582 0.98907 0.82351 0.98206 1.48133 1.21668 1.06144 1.56183 1.19437 0.78295 0.96506 0.93263 1.21442 0.95091 1.44528 0.95498 0.92514 1.24919 0.95056 0.95377 0.98683 1.69929 0.99827 1.46992 1.36579 0.86515 0.78115 0.78187 0.84732 1.20688 1.21088 1.19878 1.19350 0.84300 0.86384 0.79387 1.90725 1.74226 1.16995 1.57702 1.23711 0.99658 1.00653 1.03855 1.87838 1.17288 1.13383 1.74472 1.22321 0.97762 0.98654 1.02825 1.20339 0.93554 0.95311 0.89754 1.21980 0.97081 0.97118 1.01414 1.21594 0.97748 0.95768 0.94968 1.22172 1.00462 1.01548 0.95363 1.22763 0.91463 0.91073 1.00300 1.67441 1.23692 1.16050 1.10964 0.91197 0.92450 0.93561 0.91637 0.93005 0.92766 0.92418 0.89690 0.91860 0.93947 0.93966 0.92725 0.87833 0.87834 0.88606 0.88310 0.84405 0.84625 0.84718 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.18 37.15 0.30 -1.93 16 2 C -0.11 -1.53 3.12 -90.62 -0.28 -1.81 16 3 C -0.14 -1.49 9.19 37.16 0.34 -1.14 16 4 C 0.11 1.78 4.70 -4.04 -0.02 1.76 16 5 N -0.59 -12.17 2.28 -175.06 -0.40 -12.57 16 6 C 0.24 6.25 4.23 -5.19 -0.02 6.22 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 11 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.52 10.94 7.69 -10.99 -0.08 10.85 16 16 O -0.52 -13.49 15.44 5.55 0.09 -13.40 16 17 C -0.13 -1.93 4.98 36.01 0.18 -1.75 16 18 S -0.16 -2.51 20.86 -107.50 -2.24 -4.75 16 19 C -0.07 -0.77 6.23 36.01 0.22 -0.54 16 20 C 0.15 1.78 6.04 -82.59 -0.50 1.28 16 21 C -0.15 -1.54 9.74 -39.44 -0.38 -1.92 16 22 C -0.07 -0.62 10.18 -39.28 -0.40 -1.02 16 23 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 24 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 25 N -0.47 -5.94 10.27 -9.47 -0.10 -6.04 16 26 H 0.07 1.26 5.89 -51.93 -0.31 0.96 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.87 7.30 -51.93 -0.38 0.50 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.40 8.07 -51.92 -0.42 0.98 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.04 1.08 5.98 -51.93 -0.31 0.77 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.33 7.40 -51.92 -0.38 0.94 16 39 H 0.10 1.32 7.26 -51.92 -0.38 0.94 16 40 H 0.10 0.86 8.08 -51.92 -0.42 0.44 16 41 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -34.90 384.48 -9.89 -44.79 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.09 Total: -0.42 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.66 Total: -4.53 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.24 Total: -44.37 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.24 Total: -4.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.90 -9.89 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751380982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.381 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds