Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47415 * 2 1 4 4 C 1.53005 * 109.47418 * 120.00159 * 2 1 3 5 5 N 1.46503 * 109.46879 * 64.99621 * 4 2 1 6 6 C 1.46499 * 120.00166 * 270.00572 * 5 4 2 7 7 C 1.50705 * 109.46942 * 270.00339 * 6 5 4 8 8 H 1.07994 * 120.00053 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99803 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99805 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99692 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46802 * 89.99859 * 11 9 7 13 13 H 1.48503 * 109.46973 * 209.99644 * 11 9 7 14 14 H 1.48498 * 109.47384 * 329.99948 * 11 9 7 15 15 C 1.34770 * 119.99917 * 90.00540 * 5 4 2 16 16 O 1.21284 * 120.00348 * 179.97438 * 15 5 4 17 17 C 1.50704 * 120.00023 * 0.02562 * 15 5 4 18 18 S 1.81400 * 109.47417 * 180.02562 * 17 15 5 19 19 C 1.81392 * 103.00097 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47205 * 179.97438 * 19 18 17 21 21 C 1.38223 * 119.62264 * 270.02492 * 20 19 18 22 22 C 1.38628 * 119.16031 * 179.97438 * 21 20 19 23 23 C 1.38672 * 118.42475 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.15778 * 0.02562 * 23 22 21 25 25 N 1.31856 * 119.61279 * 89.99963 * 20 19 18 26 26 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47408 * 300.00243 * 1 2 3 28 28 H 1.09004 * 109.46954 * 60.00079 * 1 2 3 29 29 H 1.09005 * 109.47917 * 239.99924 * 2 1 3 30 30 H 1.08995 * 109.47119 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47168 * 299.99898 * 3 2 1 32 32 H 1.09001 * 109.46435 * 59.99867 * 3 2 1 33 33 H 1.09008 * 109.46687 * 305.00001 * 4 2 1 34 34 H 1.08994 * 109.47568 * 185.00059 * 4 2 1 35 35 H 1.08995 * 109.47301 * 29.99831 * 6 5 4 36 36 H 1.08991 * 109.47247 * 150.00187 * 6 5 4 37 37 H 0.97001 * 119.99716 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47206 * 59.99686 * 17 15 5 39 39 H 1.09005 * 109.47020 * 300.00250 * 17 15 5 40 40 H 1.09004 * 109.47102 * 59.99862 * 19 18 17 41 41 H 1.08998 * 109.47631 * 299.99874 * 19 18 17 42 42 H 1.07995 * 120.41821 * 359.95030 * 21 20 19 43 43 H 1.08006 * 120.78822 * 180.02562 * 22 21 20 44 44 H 1.07993 * 120.42192 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.60956 * 180.27218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3745 -2.5660 1.7612 7 6 0.5715 -2.9408 3.2075 8 1 1.5507 -2.8645 3.6565 9 6 -0.4983 -3.3822 3.9571 10 7 -1.6906 -3.4755 3.4101 11 14 -0.2539 -3.8475 5.7497 12 1 -0.4667 -2.6522 6.6048 13 1 -1.2282 -4.9038 6.1241 14 1 1.1275 -4.3563 5.9452 15 6 2.4714 -3.0331 0.6116 16 8 2.1507 -4.2018 0.5633 17 6 3.7862 -2.5877 0.0250 18 16 4.6521 -4.0197 -0.6751 19 6 6.1838 -3.2943 -1.3216 20 6 7.0274 -4.3758 -1.9460 21 6 7.9466 -5.0581 -1.1714 22 6 8.7172 -6.0515 -1.7554 23 6 8.5332 -6.3232 -3.1028 24 6 7.5948 -5.5994 -3.8135 25 7 6.8796 -4.6606 -3.2250 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 -0.3485 -1.7532 1.6918 36 1 0.0042 -3.4297 1.2092 37 1 -2.4432 -3.7857 3.9376 38 1 4.3991 -2.1384 0.8065 39 1 3.6038 -1.8541 -0.7604 40 1 6.7371 -2.8275 -0.5067 41 1 5.9412 -2.5430 -2.0731 42 1 8.0633 -4.8200 -0.1245 43 1 9.4430 -6.6014 -1.1747 44 1 9.1164 -7.0901 -3.5906 45 1 7.4424 -5.8080 -4.8622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751380982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = -29.542744 kcal Electronic energy + Delta-G solvation = -24268.251729 eV Core-core repulsion = 20796.921848 eV Total energy + Delta-G solvation = -3471.329881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06417 -40.80760 -37.83557 -35.39511 -34.17387 -33.99118 -33.23899 -31.66554 -29.16346 -28.58845 -27.96966 -26.87781 -24.71559 -24.43743 -23.14061 -21.48674 -20.09915 -18.68548 -18.11267 -17.90183 -17.49278 -17.23929 -16.84689 -16.54294 -16.36218 -16.14951 -15.58413 -15.25389 -15.10983 -14.54544 -14.39500 -14.31863 -14.21734 -13.82248 -13.75035 -13.65562 -13.36628 -13.30565 -13.01108 -12.94342 -12.68557 -12.58488 -12.54988 -12.16856 -12.11630 -11.83546 -11.56343 -11.53507 -11.04133 -10.79401 -10.74602 -10.61845 -10.40933 -9.87365 -9.43317 -8.68812 -8.21909 -6.36306 -0.17920 0.34612 0.76236 1.35245 1.38810 1.48808 1.58399 1.73306 2.28580 2.43850 2.93697 3.07645 3.23526 3.56809 3.71971 3.90475 3.97065 4.01911 4.09679 4.15562 4.21492 4.23453 4.27799 4.39758 4.44091 4.62897 4.68682 4.74459 4.83176 4.84926 4.92042 5.02774 5.05804 5.12898 5.20592 5.22921 5.27453 5.30223 5.44061 5.50140 5.59447 5.78062 5.85105 6.07838 6.66817 6.75285 7.03287 7.26463 7.42234 8.84933 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.003021 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.612607 B = 9264.838906 C =10754.303127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.108 3.892 5 N -0.592 5.592 6 C 0.263 3.737 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.966 3.034 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.509 3.491 16 O -0.583 6.583 17 C -0.102 4.102 18 S -0.236 6.236 19 C -0.041 4.041 20 C 0.119 3.881 21 C -0.162 4.162 22 C -0.079 4.079 23 C -0.167 4.167 24 C 0.083 3.917 25 N -0.506 5.506 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.039 0.961 36 H -0.011 1.011 37 H 0.266 0.734 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.151 0.849 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.438 6.301 -11.200 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.193 4.193 4 C -0.015 4.015 5 N -0.322 5.322 6 C 0.142 3.858 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.297 3.703 16 O -0.463 6.463 17 C -0.252 4.252 18 S -0.009 6.009 19 C -0.189 4.189 20 C -0.019 4.019 21 C -0.184 4.184 22 C -0.105 4.105 23 C -0.187 4.187 24 C -0.074 4.074 25 N -0.216 5.216 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.169 0.831 43 H 0.183 0.817 44 H 0.185 0.815 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 21.086 5.124 -11.665 24.636 hybrid contribution 0.139 0.140 1.415 1.429 sum 21.225 5.264 -10.250 24.151 Atomic orbital electron populations 1.21904 0.96314 1.00614 1.01775 1.21545 0.95659 0.97941 0.97545 1.21727 1.01885 0.93157 1.02550 1.21939 1.01252 0.79217 0.99068 1.48104 1.20021 1.08543 1.55544 1.18852 0.80829 0.94349 0.91817 1.21745 0.94973 1.44765 0.96688 0.92888 1.25841 0.94708 0.95144 1.03429 1.70055 1.00683 1.47693 1.38397 0.85441 0.77842 0.78428 0.79264 1.18655 1.20803 1.19800 1.20330 0.85945 0.85512 0.78548 1.90691 1.75931 1.19740 1.59975 1.23504 0.96185 1.00343 1.05211 1.88151 1.21215 1.16197 1.75338 1.22299 0.94740 0.98331 1.03516 1.20503 0.94763 0.96547 0.90085 1.22238 0.96856 0.97242 1.02014 1.22029 0.97756 0.95265 0.95439 1.22558 0.99547 1.01251 0.95335 1.23232 0.91773 0.90927 1.01500 1.67389 1.25020 1.17513 1.11710 0.95331 0.93023 0.91524 0.91223 0.90642 0.91595 0.92343 0.90717 0.87969 0.94339 0.99277 0.92474 0.84553 0.84822 0.85824 0.87735 0.83090 0.81721 0.81528 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.18 71.98 0.59 -3.91 16 2 C -0.11 -2.67 3.12 -10.79 -0.03 -2.71 16 3 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 4 C 0.11 3.20 4.70 86.38 0.41 3.61 16 5 N -0.59 -25.01 2.28 -826.15 -1.88 -26.89 16 6 C 0.26 14.27 4.23 85.63 0.36 14.63 16 7 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.01 0.45 5.46 84.66 0.46 0.91 16 10 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 11 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 15 C 0.51 21.85 7.69 87.66 0.67 22.52 16 16 O -0.58 -32.00 15.44 -3.04 -0.05 -32.05 16 17 C -0.10 -2.93 4.98 71.24 0.35 -2.58 16 18 S -0.24 -7.51 20.86 -56.49 -1.18 -8.69 16 19 C -0.04 -0.86 6.23 71.24 0.44 -0.42 16 20 C 0.12 2.70 6.04 42.55 0.26 2.95 16 21 C -0.16 -2.94 9.74 22.36 0.22 -2.72 16 22 C -0.08 -1.12 10.18 22.47 0.23 -0.89 16 23 C -0.17 -2.25 10.11 22.36 0.23 -2.03 16 24 C 0.08 1.51 11.18 84.67 0.95 2.45 16 25 N -0.51 -12.39 10.27 -183.88 -1.89 -14.27 16 26 H 0.03 1.08 5.89 -2.39 -0.01 1.06 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.70 7.30 -2.38 -0.02 1.69 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 2.39 8.07 -2.38 -0.02 2.37 16 34 H 0.10 2.25 6.44 -2.39 -0.02 2.23 16 35 H 0.04 2.09 5.98 -2.39 -0.01 2.08 16 36 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.14 3.01 7.40 -2.39 -0.02 3.00 16 39 H 0.13 3.02 7.26 -2.39 -0.02 3.01 16 40 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 41 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 45 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -82.81 384.48 4.31 -78.49 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.96 Total: 13.80 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 6.04 Total: -1.25 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -3.49 Total: -97.88 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.18 Total: -8.69 kcal Total: -82.81 4.31 -78.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751380982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.952 kcal (2) G-P(sol) polarization free energy of solvation -82.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds