Wall clock time and date at job start Tue Mar 31 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46741 * 2 1 4 4 C 1.52999 * 109.47101 * 119.99951 * 2 1 3 5 5 N 1.46496 * 109.47292 * 65.00005 * 4 2 1 6 6 C 1.46498 * 120.00502 * 269.99789 * 5 4 2 7 7 C 1.50697 * 109.47305 * 270.00166 * 6 5 4 8 8 H 1.08007 * 119.99771 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99848 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99745 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00481 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46968 * 89.99629 * 11 9 7 13 13 H 1.48494 * 109.47337 * 210.00217 * 11 9 7 14 14 H 1.48504 * 109.46652 * 330.00095 * 11 9 7 15 15 C 1.34786 * 119.99590 * 89.99876 * 5 4 2 16 16 O 1.21276 * 119.99591 * 180.02562 * 15 5 4 17 17 C 1.50700 * 120.00140 * 0.02562 * 15 5 4 18 18 C 1.52993 * 109.46977 * 179.97438 * 17 15 5 19 19 S 1.81399 * 109.47075 * 179.97438 * 18 17 15 20 20 C 1.76200 * 102.99971 * 179.97438 * 19 18 17 21 21 C 1.39208 * 119.70805 * 179.97438 * 20 19 18 22 22 C 1.38274 * 119.08752 * 179.97438 * 21 20 19 23 23 C 1.38909 * 118.51576 * 0.02562 * 22 21 20 24 24 C 1.38031 * 119.33836 * 0.27638 * 23 22 21 25 25 N 1.31960 * 120.86241 * 359.44535 * 24 23 22 26 26 H 1.09001 * 109.47212 * 299.99505 * 1 2 3 27 27 H 1.08996 * 109.47531 * 60.00445 * 1 2 3 28 28 H 1.09006 * 109.46905 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47148 * 239.99862 * 2 1 3 30 30 H 1.09005 * 109.47243 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47446 * 300.00030 * 3 2 1 32 32 H 1.09006 * 109.47565 * 60.00288 * 3 2 1 33 33 H 1.09005 * 109.46908 * 304.99877 * 4 2 1 34 34 H 1.09003 * 109.46958 * 185.00691 * 4 2 1 35 35 H 1.09006 * 109.46443 * 30.00111 * 6 5 4 36 36 H 1.09002 * 109.47046 * 149.99603 * 6 5 4 37 37 H 0.97006 * 119.99814 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.47099 * 60.00030 * 17 15 5 39 39 H 1.09002 * 109.46704 * 300.00299 * 17 15 5 40 40 H 1.09003 * 109.47112 * 60.00123 * 18 17 15 41 41 H 1.09002 * 109.47075 * 300.00163 * 18 17 15 42 42 H 1.07997 * 120.45449 * 0.02633 * 21 20 19 43 43 H 1.08004 * 120.73533 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.32660 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.56637 * 179.72239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.3747 -2.5660 1.7613 7 6 0.5717 -2.9409 3.2076 8 1 1.5511 -2.8645 3.6566 9 6 -0.4981 -3.3813 3.9575 10 7 -0.3260 -3.7089 5.2195 11 14 -2.1920 -3.5128 3.1811 12 1 -2.3642 -4.8664 2.5952 13 1 -3.2306 -3.2862 4.2178 14 1 -2.3275 -2.4901 2.1128 15 6 2.4717 -3.0330 0.6116 16 8 2.1506 -4.2015 0.5626 17 6 3.7864 -2.5875 0.0250 18 6 4.5173 -3.7955 -0.5643 19 16 6.0995 -3.2592 -1.2711 20 6 6.7861 -4.7593 -1.8897 21 6 8.0283 -4.7421 -2.5179 22 6 8.5552 -5.9268 -2.9981 23 6 7.8201 -7.0941 -2.8345 24 6 6.5918 -7.0375 -2.2073 25 7 6.1154 -5.8935 -1.7539 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6442 1.2952 35 1 -0.3483 -1.7532 1.6919 36 1 0.0044 -3.4298 1.2092 37 1 -1.0788 -4.0185 5.7472 38 1 4.3993 -2.1382 0.8065 39 1 3.6039 -1.8540 -0.7604 40 1 3.9046 -4.2452 -1.3457 41 1 4.6997 -4.5286 0.2214 42 1 8.5732 -3.8162 -2.6279 43 1 9.5169 -5.9442 -3.4895 44 1 8.2037 -8.0357 -3.1988 45 1 6.0152 -7.9420 -2.0822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755242332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:38 Heat of formation + Delta-G solvation = -36.175239 kcal Electronic energy + Delta-G solvation = -24446.702832 eV Core-core repulsion = 20975.085345 eV Total energy + Delta-G solvation = -3471.617488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97346 -40.85759 -37.89839 -35.42143 -34.23500 -34.02930 -33.41933 -32.22327 -30.42434 -27.96709 -27.00991 -26.19454 -24.69255 -24.46670 -23.43730 -21.41424 -19.91112 -19.15036 -18.95146 -18.12142 -17.35371 -17.27540 -16.91534 -16.84884 -16.19521 -15.89219 -15.63181 -15.39840 -15.09774 -14.92551 -14.48332 -14.39802 -14.16323 -13.96380 -13.79035 -13.58327 -13.34500 -13.07760 -12.97692 -12.74643 -12.66894 -12.53189 -12.45103 -12.14926 -11.96847 -11.77831 -11.60644 -11.52890 -11.51061 -11.02995 -10.83449 -10.74986 -10.73174 -10.51453 -9.38445 -8.61131 -8.35445 -6.39648 0.00112 0.30063 0.37543 1.12658 1.29391 1.33691 1.41773 1.74600 2.28614 2.33097 2.72775 2.99058 3.53332 3.64012 3.76481 3.84123 3.94966 3.97675 4.05322 4.12833 4.19567 4.24729 4.38388 4.42343 4.59055 4.66269 4.71725 4.74941 4.75590 4.88233 4.91236 4.92312 4.97443 5.06016 5.08835 5.13332 5.21726 5.30073 5.44528 5.44601 5.53750 5.67412 5.68050 6.23053 6.61491 6.67454 6.79396 7.19979 7.38458 8.81719 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003082 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.006948 B = 9081.393072 C =10541.423120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.106 3.894 5 N -0.593 5.593 6 C 0.226 3.774 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.237 1.237 15 C 0.503 3.497 16 O -0.594 6.594 17 C -0.111 4.111 18 C -0.069 4.069 19 S -0.056 6.056 20 C 0.089 3.911 21 C -0.155 4.155 22 C -0.056 4.056 23 C -0.171 4.171 24 C 0.091 3.909 25 N -0.529 5.529 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.012 0.988 37 H 0.268 0.732 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.170 0.830 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.798 5.648 -20.309 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 C -0.195 4.195 4 C -0.016 4.016 5 N -0.323 5.323 6 C 0.103 3.897 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.160 1.160 15 C 0.290 3.710 16 O -0.475 6.475 17 C -0.152 4.152 18 C -0.218 4.218 19 S 0.186 5.814 20 C -0.159 4.159 21 C -0.181 4.181 22 C -0.083 4.083 23 C -0.194 4.194 24 C -0.069 4.069 25 N -0.242 5.242 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.177 0.823 43 H 0.196 0.804 44 H 0.188 0.812 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 16.081 6.214 -19.717 26.191 hybrid contribution -0.869 -2.084 0.334 2.283 sum 15.211 4.129 -19.383 24.983 Atomic orbital electron populations 1.21962 0.95963 1.00963 1.02158 1.21541 0.96001 0.97714 0.97401 1.21738 1.01816 0.93411 1.02555 1.21941 1.01301 0.79134 0.99216 1.47941 1.19863 1.08810 1.55643 1.19403 0.83262 0.95544 0.91468 1.21600 0.95554 1.44442 0.95751 0.95317 1.25818 1.03623 0.94075 0.95112 1.70052 1.33218 1.46190 1.09118 0.85786 0.78682 0.79729 0.79243 1.20383 1.19828 1.15986 1.21035 0.86566 0.85265 0.78105 1.90658 1.76411 1.19810 1.60602 1.21421 0.92564 0.98236 1.03008 1.22939 0.95540 1.00318 1.03001 1.84904 1.19690 1.06999 1.69823 1.23337 0.95817 0.96724 1.00011 1.21982 0.94530 1.01609 0.99973 1.22004 1.00550 0.90904 0.94857 1.22494 0.95265 1.01230 1.00398 1.23164 0.95068 0.95231 0.93400 1.68047 1.36022 0.99459 1.20682 0.92804 0.91148 0.94663 0.90664 0.91020 0.91303 0.92511 0.90986 0.88474 0.92581 0.96954 0.92302 0.86451 0.85229 0.90273 0.91296 0.82320 0.80446 0.81206 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.18 71.98 0.59 -3.41 16 2 C -0.11 -2.47 3.12 -10.79 -0.03 -2.50 16 3 C -0.14 -2.27 9.19 71.98 0.66 -1.60 16 4 C 0.11 3.15 4.70 86.38 0.41 3.56 16 5 N -0.59 -24.18 2.28 -826.15 -1.88 -26.06 16 6 C 0.23 11.16 3.30 85.63 0.28 11.45 16 7 C -0.53 -32.10 9.94 25.60 0.25 -31.85 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 9 C 0.01 0.70 5.47 84.65 0.46 1.16 16 10 N -0.95 -60.89 13.96 21.44 0.30 -60.59 16 11 Si 0.94 45.43 27.47 68.60 1.88 47.31 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 15 C 0.50 20.81 7.67 87.66 0.67 21.49 16 16 O -0.59 -30.94 15.56 -3.02 -0.05 -30.99 16 17 C -0.11 -3.20 4.26 29.85 0.13 -3.07 16 18 C -0.07 -2.14 4.49 71.98 0.32 -1.81 16 19 S -0.06 -1.36 21.91 -56.49 -1.24 -2.60 16 20 C 0.09 2.24 7.00 84.83 0.59 2.84 16 21 C -0.15 -2.72 9.84 22.51 0.22 -2.50 16 22 C -0.06 -0.71 10.16 22.44 0.23 -0.48 16 23 C -0.17 -2.40 10.11 22.38 0.23 -2.17 16 24 C 0.09 1.93 11.17 84.62 0.95 2.88 16 25 N -0.53 -15.07 9.43 -192.21 -1.81 -16.89 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.03 1.11 5.90 -2.38 -0.01 1.10 16 29 H 0.07 1.65 7.30 -2.39 -0.02 1.63 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 34 H 0.10 2.32 6.44 -2.39 -0.02 2.30 16 35 H 0.06 2.56 5.03 -2.38 -0.01 2.55 16 36 H 0.01 0.67 6.85 -2.39 -0.02 0.65 16 37 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 38 H 0.12 2.94 7.40 -2.39 -0.02 2.92 16 39 H 0.13 2.85 7.26 -2.39 -0.02 2.83 16 40 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 41 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 42 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -82.97 379.74 4.07 -78.89 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.91 Total: 16.95 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.96 Total: -6.04 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.40 Total: -103.54 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.24 Total: -2.60 kcal Total: -82.97 4.07 -78.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755242332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.720 kcal (2) G-P(sol) polarization free energy of solvation -82.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds