Wall clock time and date at job start Tue Mar 31 2020 13:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47465 * 2 1 4 4 C 1.50706 * 109.46728 * 120.00023 * 2 1 3 5 5 N 1.28008 * 119.99924 * 359.97438 * 4 2 1 6 6 N 1.40103 * 119.99757 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99970 * 180.02562 * 6 5 4 8 8 O 1.21301 * 119.99927 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00139 * 180.02562 * 7 6 5 10 10 O 1.42893 * 109.47156 * 179.97438 * 9 7 6 11 11 C 1.35956 * 117.00026 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.06128 * 359.97438 * 11 10 9 13 13 C 1.38184 * 119.96964 * 180.02562 * 12 11 10 14 14 C 1.38265 * 120.09281 * 359.97438 * 13 12 11 15 15 C 1.38248 * 120.12705 * 0.02562 * 14 13 12 16 16 C 1.38332 * 120.03366 * 359.97438 * 15 14 13 17 17 F 1.35103 * 120.05240 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47474 * 239.99624 * 2 1 3 19 19 C 1.50702 * 109.46975 * 59.99933 * 18 2 1 20 20 H 1.08003 * 119.99771 * 0.02562 * 19 18 2 21 21 C 1.37877 * 120.00211 * 180.02562 * 19 18 2 22 22 N 1.31520 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47188 * 59.99912 * 23 21 19 25 25 H 1.48501 * 109.46885 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46903 * 299.99320 * 23 21 19 27 27 H 1.09002 * 109.47040 * 300.00661 * 1 2 3 28 28 H 1.09009 * 109.46592 * 59.99817 * 1 2 3 29 29 H 1.08997 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46945 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46776 * 299.99680 * 3 2 1 32 32 H 1.08994 * 109.47230 * 59.99646 * 3 2 1 33 33 H 1.08002 * 119.99528 * 179.97438 * 4 2 1 34 34 H 0.97000 * 120.00204 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.46839 * 59.99224 * 9 7 6 36 36 H 1.09001 * 109.46752 * 299.99815 * 9 7 6 37 37 H 1.08004 * 120.01774 * 0.03769 * 12 11 10 38 38 H 1.08000 * 119.95526 * 180.27319 * 13 12 11 39 39 H 1.08001 * 119.93128 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.98480 * 180.02562 * 15 14 13 41 41 H 1.08993 * 109.47671 * 180.02562 * 18 2 1 42 42 H 1.09005 * 109.47368 * 300.00717 * 18 2 1 43 43 H 0.97003 * 119.99430 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.2003 -1.1965 2.0733 6 7 1.6673 -1.8565 3.2176 7 6 0.7914 -2.3687 4.1047 8 8 -0.4011 -2.2578 3.9127 9 6 1.2937 -3.0781 5.3358 10 8 0.1822 -3.5268 6.1137 11 6 0.4635 -4.1915 7.2659 12 6 1.7813 -4.4075 7.6392 13 6 2.0649 -5.0837 8.8104 14 6 1.0365 -5.5450 9.6112 15 6 -0.2789 -5.3318 9.2427 16 6 -0.5688 -4.6554 8.0714 17 9 -1.8541 -4.4464 7.7112 18 6 2.0401 -0.7213 -1.2491 19 6 1.5377 -0.0110 -2.4797 20 1 0.9171 0.8674 -2.3806 21 6 1.8704 -0.4823 -3.7319 22 7 2.6258 -1.5522 -3.8525 23 14 1.2483 0.3986 -5.2572 24 1 1.7443 1.7983 -5.2573 25 1 1.7433 -0.3015 -6.4696 26 1 -0.2366 0.3995 -5.2571 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.0941 -0.8095 1.4012 34 1 2.6209 -1.9455 3.3709 35 1 1.8987 -2.3924 5.9288 36 1 1.8998 -3.9343 5.0398 37 1 2.5857 -4.0472 7.0150 38 1 3.0914 -5.2479 9.1032 39 1 1.2612 -6.0735 10.5258 40 1 -1.0804 -5.6927 9.8701 41 1 3.1300 -0.7217 -1.2489 42 1 1.6767 -1.7490 -1.2492 43 1 2.8601 -1.8836 -4.7335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755511548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:35 Heat of formation + Delta-G solvation = -55.542280 kcal Electronic energy + Delta-G solvation = -25576.291524 eV Core-core repulsion = 21537.621043 eV Total energy + Delta-G solvation = -4038.670482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.03024 -40.67297 -39.40413 -37.91056 -37.37505 -35.30492 -32.61416 -31.55980 -31.14862 -30.48056 -28.30002 -27.05859 -26.40286 -24.22513 -23.36969 -22.89817 -21.89448 -20.74301 -19.00280 -18.55935 -17.46464 -17.19843 -16.90928 -16.80019 -16.50274 -16.22919 -15.72868 -15.42335 -14.86379 -14.68633 -14.61139 -14.48836 -13.74451 -13.46037 -13.31428 -13.10459 -12.88791 -12.77101 -12.17515 -12.07761 -11.97521 -11.65503 -11.56889 -11.35125 -10.99680 -10.95306 -10.85323 -10.60805 -10.29173 -10.17851 -9.96516 -9.67311 -9.46552 -9.42272 -9.01183 -8.65838 -8.57822 -8.37764 -6.02867 -4.03935 0.65650 0.78668 1.94196 2.02376 2.86617 3.06109 3.11323 3.33085 3.37880 3.40373 3.83340 4.10731 4.29372 4.41367 4.44806 4.47052 4.58710 4.72490 4.76335 5.00442 5.07634 5.23900 5.33994 5.47376 5.57256 5.70130 5.82737 5.89877 5.91823 5.99966 6.14314 6.33721 6.51295 6.62188 6.76614 6.78561 7.00248 7.05991 7.08876 7.21876 7.56263 7.60966 7.72537 7.95270 8.35331 8.49935 8.99838 9.59351 11.08622 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030135 B = 0.001874 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.938164 B =14939.122413 C =15100.990474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.015 4.015 3 C -0.123 4.123 4 C 0.113 3.887 5 N -0.247 5.247 6 N -0.591 5.591 7 C 0.530 3.470 8 O -0.481 6.481 9 C 0.047 3.953 10 O -0.280 6.280 11 C 0.098 3.902 12 C -0.185 4.185 13 C -0.089 4.089 14 C -0.130 4.130 15 C -0.116 4.116 16 C 0.074 3.926 17 F -0.128 7.128 18 C 0.040 3.960 19 C -0.511 4.511 20 H 0.062 0.938 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.276 1.276 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.103 0.897 34 H 0.378 0.622 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -5.929 26.797 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.018 4.018 3 C -0.181 4.181 4 C -0.102 4.102 5 N -0.048 5.048 6 N -0.333 5.333 7 C 0.313 3.687 8 O -0.351 6.351 9 C -0.033 4.033 10 O -0.192 6.192 11 C 0.052 3.948 12 C -0.204 4.204 13 C -0.107 4.107 14 C -0.148 4.148 15 C -0.135 4.135 16 C 0.054 3.946 17 F -0.107 7.107 18 C 0.002 3.998 19 C -0.549 4.549 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.202 1.202 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.216 0.784 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.843 -6.124 26.803 27.555 hybrid contribution 1.337 0.266 -0.931 1.650 sum 3.179 -5.858 25.872 26.717 Atomic orbital electron populations 1.21616 0.93675 1.01899 1.00477 1.19857 0.96717 0.94730 0.90483 1.21717 1.00424 0.94646 1.01326 1.26775 0.96341 0.92875 0.94195 1.74715 1.27309 1.08337 0.94471 1.46879 1.08280 1.56963 1.21217 1.19603 0.86735 0.79407 0.82906 1.90794 1.15258 1.54479 1.74538 1.22441 0.88993 1.00144 0.91755 1.86233 1.32378 1.69359 1.31186 1.19095 0.93243 0.95322 0.87190 1.21210 0.94240 1.04811 1.00121 1.21038 0.99939 0.96336 0.93437 1.20964 0.91458 1.01620 1.00771 1.21069 0.98598 0.98969 0.94868 1.17037 0.77829 1.04123 0.95611 1.91549 1.34250 1.93224 1.91632 1.19134 0.96252 0.95410 0.89017 1.21125 1.31353 1.12215 0.90246 0.91984 1.25005 0.95249 0.95068 0.99134 1.69953 1.36972 1.22979 1.23623 0.86662 0.79295 0.79700 0.82391 1.20240 1.21443 1.20202 0.94296 0.91668 0.92970 0.93133 0.90500 0.94575 0.88005 0.78415 0.88465 0.88372 0.84330 0.84859 0.84727 0.83897 0.96231 0.96248 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 7.45 37.16 0.28 -2.11 16 2 C -0.02 -0.29 0.75 -155.66 -0.12 -0.41 16 3 C -0.12 -2.11 8.20 37.16 0.30 -1.80 16 4 C 0.11 1.89 9.56 -13.87 -0.13 1.76 16 5 N -0.25 -4.37 9.70 32.67 0.32 -4.05 16 6 N -0.59 -8.06 6.25 31.22 0.20 -7.87 16 7 C 0.53 7.76 8.02 -10.98 -0.09 7.67 16 8 O -0.48 -9.78 16.84 -14.37 -0.24 -10.02 16 9 C 0.05 0.44 5.22 36.01 0.19 0.63 16 10 O -0.28 -3.63 9.53 -39.51 -0.38 -4.00 16 11 C 0.10 1.03 6.69 -39.18 -0.26 0.77 16 12 C -0.19 -1.31 9.04 -39.45 -0.36 -1.66 16 13 C -0.09 -0.50 10.04 -39.59 -0.40 -0.90 16 14 C -0.13 -0.74 10.04 -39.57 -0.40 -1.14 16 15 C -0.12 -0.87 10.02 -39.54 -0.40 -1.27 16 16 C 0.07 0.80 7.31 -39.30 -0.29 0.51 16 17 F -0.13 -1.71 17.11 2.25 0.04 -1.67 16 18 C 0.04 0.95 4.02 -27.88 -0.11 0.84 16 19 C -0.51 -13.35 7.65 -34.44 -0.26 -13.62 16 20 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 23 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 28 H 0.06 1.33 6.62 -51.92 -0.34 0.98 16 29 H 0.05 1.11 8.06 -51.93 -0.42 0.70 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.39 8.00 -52.49 -0.42 0.97 16 34 H 0.38 3.43 8.63 -182.60 -1.58 1.86 16 35 H 0.10 0.58 7.66 -51.93 -0.40 0.18 16 36 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 37 H 0.14 0.62 6.30 -52.48 -0.33 0.29 16 38 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 39 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -35.31 371.41 -7.93 -43.25 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.04 Total: -2.79 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.14 Total: -9.26 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 1.25 Total: -37.08 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.62 Total: -14.03 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.31 -7.93 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755511548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.296 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds