Wall clock time and date at job start Tue Mar 31 2020 13:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47465 * 2 1 4 4 C 1.50706 * 109.46728 * 120.00023 * 2 1 3 5 5 N 1.28008 * 119.99924 * 359.97438 * 4 2 1 6 6 N 1.40103 * 119.99757 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99970 * 180.02562 * 6 5 4 8 8 O 1.21301 * 119.99927 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00139 * 180.02562 * 7 6 5 10 10 O 1.42893 * 109.47156 * 179.97438 * 9 7 6 11 11 C 1.35956 * 117.00026 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.06128 * 359.97438 * 11 10 9 13 13 C 1.38184 * 119.96964 * 180.02562 * 12 11 10 14 14 C 1.38265 * 120.09281 * 359.97438 * 13 12 11 15 15 C 1.38248 * 120.12705 * 0.02562 * 14 13 12 16 16 C 1.38332 * 120.03366 * 359.97438 * 15 14 13 17 17 F 1.35103 * 120.05240 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47474 * 239.99624 * 2 1 3 19 19 C 1.50702 * 109.46975 * 59.99933 * 18 2 1 20 20 H 1.08003 * 119.99771 * 0.02562 * 19 18 2 21 21 C 1.37877 * 120.00211 * 180.02562 * 19 18 2 22 22 N 1.31520 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47188 * 59.99912 * 23 21 19 25 25 H 1.48501 * 109.46885 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46903 * 299.99320 * 23 21 19 27 27 H 1.09002 * 109.47040 * 300.00661 * 1 2 3 28 28 H 1.09009 * 109.46592 * 59.99817 * 1 2 3 29 29 H 1.08997 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46945 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46776 * 299.99680 * 3 2 1 32 32 H 1.08994 * 109.47230 * 59.99646 * 3 2 1 33 33 H 1.08002 * 119.99528 * 179.97438 * 4 2 1 34 34 H 0.97000 * 120.00204 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.46839 * 59.99224 * 9 7 6 36 36 H 1.09001 * 109.46752 * 299.99815 * 9 7 6 37 37 H 1.08004 * 120.01774 * 0.03769 * 12 11 10 38 38 H 1.08000 * 119.95526 * 180.27319 * 13 12 11 39 39 H 1.08001 * 119.93128 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.98480 * 180.02562 * 15 14 13 41 41 H 1.08993 * 109.47671 * 180.02562 * 18 2 1 42 42 H 1.09005 * 109.47368 * 300.00717 * 18 2 1 43 43 H 0.97003 * 119.99430 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.2003 -1.1965 2.0733 6 7 1.6673 -1.8565 3.2176 7 6 0.7914 -2.3687 4.1047 8 8 -0.4011 -2.2578 3.9127 9 6 1.2937 -3.0781 5.3358 10 8 0.1822 -3.5268 6.1137 11 6 0.4635 -4.1915 7.2659 12 6 1.7813 -4.4075 7.6392 13 6 2.0649 -5.0837 8.8104 14 6 1.0365 -5.5450 9.6112 15 6 -0.2789 -5.3318 9.2427 16 6 -0.5688 -4.6554 8.0714 17 9 -1.8541 -4.4464 7.7112 18 6 2.0401 -0.7213 -1.2491 19 6 1.5377 -0.0110 -2.4797 20 1 0.9171 0.8674 -2.3806 21 6 1.8704 -0.4823 -3.7319 22 7 2.6258 -1.5522 -3.8525 23 14 1.2483 0.3986 -5.2572 24 1 1.7443 1.7983 -5.2573 25 1 1.7433 -0.3015 -6.4696 26 1 -0.2366 0.3995 -5.2571 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.0941 -0.8095 1.4012 34 1 2.6209 -1.9455 3.3709 35 1 1.8987 -2.3924 5.9288 36 1 1.8998 -3.9343 5.0398 37 1 2.5857 -4.0472 7.0150 38 1 3.0914 -5.2479 9.1032 39 1 1.2612 -6.0735 10.5258 40 1 -1.0804 -5.6927 9.8701 41 1 3.1300 -0.7217 -1.2489 42 1 1.6767 -1.7490 -1.2492 43 1 2.8601 -1.8836 -4.7335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755511548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:35 Heat of formation + Delta-G solvation = -78.120076 kcal Electronic energy + Delta-G solvation = -25577.270571 eV Core-core repulsion = 21537.621043 eV Total energy + Delta-G solvation = -4039.649528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86221 -41.47708 -40.42529 -39.13192 -38.30660 -36.74988 -34.51012 -32.85694 -31.68382 -31.18921 -29.27841 -28.79710 -27.94832 -25.84246 -24.26331 -23.55783 -23.18631 -21.88234 -19.92943 -19.68531 -18.43647 -18.26110 -18.09975 -17.87562 -17.69538 -17.37801 -16.63055 -16.52949 -16.01876 -15.63366 -15.61229 -15.39826 -15.33133 -14.91420 -14.53788 -14.20072 -13.98341 -13.74090 -13.55740 -13.24135 -12.94308 -12.73759 -12.71176 -12.69083 -12.59343 -12.29905 -12.22138 -12.17715 -12.08973 -11.69944 -11.33337 -11.18180 -11.11449 -10.77190 -10.47464 -9.95547 -9.90966 -9.28613 -8.12275 -6.18539 0.11929 0.23643 0.79067 1.01937 1.45582 1.47438 1.54100 1.69403 2.24054 2.47422 2.59954 3.21554 3.22860 3.26341 3.78136 3.79134 3.83498 3.98234 3.98391 4.02334 4.27172 4.33491 4.34102 4.39824 4.49347 4.57759 4.89789 4.96420 5.00609 5.08342 5.14604 5.16434 5.25728 5.41389 5.42502 5.51032 5.52806 5.56350 5.63494 5.77125 5.90757 6.00994 6.18254 6.32410 6.49827 6.94537 7.37949 7.48460 8.99547 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030135 B = 0.001874 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.938164 B =14939.122413 C =15100.990474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.014 4.014 3 C -0.116 4.116 4 C 0.115 3.885 5 N -0.284 5.284 6 N -0.575 5.575 7 C 0.524 3.476 8 O -0.551 6.551 9 C 0.055 3.945 10 O -0.323 6.323 11 C 0.073 3.927 12 C -0.181 4.181 13 C -0.081 4.081 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.027 3.973 17 F -0.157 7.157 18 C 0.049 3.951 19 C -0.516 4.516 20 H 0.070 0.930 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.955 3.045 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.274 1.274 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.406 0.594 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.009 0.991 42 H -0.018 1.018 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 -5.655 28.999 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.016 4.016 3 C -0.175 4.175 4 C -0.099 4.099 5 N -0.086 5.086 6 N -0.320 5.320 7 C 0.312 3.688 8 O -0.426 6.426 9 C -0.024 4.024 10 O -0.237 6.237 11 C 0.027 3.973 12 C -0.199 4.199 13 C -0.099 4.099 14 C -0.141 4.141 15 C -0.137 4.137 16 C 0.007 3.993 17 F -0.136 7.136 18 C 0.010 3.990 19 C -0.554 4.554 20 H 0.088 0.912 21 C -0.198 4.198 22 N -0.575 5.575 23 Si 0.780 3.220 24 H -0.188 1.188 25 H -0.216 1.216 26 H -0.200 1.200 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.247 0.753 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.028 0.972 42 H 0.000 1.000 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.574 -5.837 29.021 29.953 hybrid contribution 0.545 0.097 -1.475 1.575 sum 5.119 -5.741 27.546 28.600 Atomic orbital electron populations 1.21506 0.94613 1.00227 1.00446 1.19654 0.95883 0.96103 0.89984 1.21639 1.01275 0.92810 1.01738 1.26529 0.97807 0.92495 0.93109 1.74565 1.29406 1.08682 0.95964 1.46646 1.09807 1.55837 1.19737 1.20727 0.85926 0.78317 0.83874 1.90764 1.18283 1.57247 1.76268 1.22607 0.88333 1.01850 0.89624 1.86155 1.34545 1.70417 1.32583 1.19380 0.94693 0.96436 0.86794 1.21594 0.93200 1.04213 1.00932 1.21547 1.01659 0.94413 0.92298 1.21426 0.90456 1.00591 1.01667 1.21347 1.00283 0.98243 0.93833 1.17680 0.77062 1.06848 0.97712 1.91458 1.36239 1.93793 1.92136 1.18942 0.95351 0.93700 0.90961 1.21550 1.30568 1.12202 0.91122 0.91213 1.25851 0.95672 0.95858 1.02398 1.70083 1.38655 1.24648 1.24138 0.85652 0.78650 0.79064 0.78597 1.18800 1.21591 1.19955 0.93210 0.92595 0.95443 0.91744 0.91945 0.92253 0.84564 0.75250 0.84170 0.84638 0.81327 0.81232 0.81510 0.82619 0.97249 0.99969 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 7.45 71.98 0.54 -3.96 16 2 C -0.01 -0.52 0.75 -52.93 -0.04 -0.56 16 3 C -0.12 -3.80 8.20 71.98 0.59 -3.21 16 4 C 0.11 3.71 9.56 88.67 0.85 4.56 16 5 N -0.28 -9.90 9.70 -50.46 -0.49 -10.39 16 6 N -0.58 -14.81 6.25 -173.51 -1.08 -15.89 16 7 C 0.52 15.10 8.02 87.66 0.70 15.80 16 8 O -0.55 -23.37 16.84 15.94 0.27 -23.11 16 9 C 0.05 0.92 5.22 71.24 0.37 1.29 16 10 O -0.32 -8.44 9.53 -74.02 -0.71 -9.14 16 11 C 0.07 1.48 6.69 22.53 0.15 1.64 16 12 C -0.18 -1.95 9.04 22.36 0.20 -1.75 16 13 C -0.08 -0.56 10.04 22.26 0.22 -0.33 16 14 C -0.12 -0.99 10.04 22.28 0.22 -0.77 16 15 C -0.12 -1.66 10.02 22.29 0.22 -1.44 16 16 C 0.03 0.59 7.31 22.45 0.16 0.76 16 17 F -0.16 -4.62 17.11 44.97 0.77 -3.85 16 18 C 0.05 2.37 4.02 29.85 0.12 2.49 16 19 C -0.52 -27.24 7.65 25.60 0.20 -27.05 16 20 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 22 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 23 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 28 H 0.06 2.32 6.62 -2.38 -0.02 2.30 16 29 H 0.03 1.20 8.06 -2.39 -0.02 1.19 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.21 6.62 -2.39 -0.02 2.19 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.14 3.35 8.00 -2.91 -0.02 3.32 16 34 H 0.41 6.09 8.63 -213.32 -1.84 4.25 16 35 H 0.14 1.11 7.66 -2.39 -0.02 1.09 16 36 H 0.14 1.23 7.66 -2.39 -0.02 1.21 16 37 H 0.17 0.64 6.30 -2.91 -0.02 0.62 16 38 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 39 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 43 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -83.66 371.41 5.24 -78.42 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -0.80 Total: 5.52 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.98 Total: -12.09 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -1.29 Total: -81.05 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.44 Total: -32.25 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.77 Total: -3.85 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -83.66 5.24 -78.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755511548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.296 kcal (2) G-P(sol) polarization free energy of solvation -83.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds