Wall clock time and date at job start Tue Mar 31 2020 14:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00106 * 2 1 4 4 C 1.53001 * 109.46783 * 125.00443 * 3 2 1 5 5 H 1.09003 * 109.47566 * 54.99734 * 4 3 2 6 6 N 1.46500 * 109.46862 * 294.99845 * 4 3 2 7 7 C 1.34776 * 119.99996 * 85.00141 * 6 4 3 8 8 O 1.21577 * 120.00225 * 0.02562 * 7 6 4 9 9 C 1.47645 * 119.99535 * 179.97438 * 7 6 4 10 10 C 1.40015 * 119.89294 * 180.02562 * 9 7 6 11 11 C 1.36310 * 120.11003 * 180.27632 * 10 9 7 12 12 C 1.40893 * 119.89094 * 359.50007 * 11 10 9 13 13 C 1.41102 * 120.10510 * 180.22834 * 12 11 10 14 14 H 1.07998 * 120.00085 * 204.79439 * 13 12 11 15 15 C 1.40229 * 120.00170 * 24.80056 * 13 12 11 16 16 N 1.30645 * 119.99784 * 17.73895 * 15 13 12 17 17 Si 1.86801 * 120.00102 * 197.74141 * 15 13 12 18 18 H 1.48500 * 109.46959 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47119 * 119.99901 * 17 15 13 20 20 H 1.48503 * 109.47053 * 239.99501 * 17 15 13 21 21 C 1.40888 * 119.79217 * 0.49526 * 12 11 10 22 22 C 1.36318 * 119.88896 * 359.75809 * 21 12 11 23 23 C 1.50694 * 109.46989 * 174.99960 * 4 3 2 24 24 C 1.38653 * 120.79266 * 79.71499 * 23 4 3 25 25 C 1.38204 * 119.16322 * 179.75371 * 24 23 4 26 26 N 1.31866 * 120.76521 * 0.53108 * 25 24 23 27 27 C 1.31875 * 121.72756 * 359.74471 * 26 25 24 28 28 C 1.38203 * 120.76138 * 359.97350 * 27 26 25 29 29 H 1.07995 * 120.00386 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99857 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99508 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47201 * 5.00152 * 3 2 1 33 33 H 1.09006 * 109.47166 * 244.99992 * 3 2 1 34 34 H 0.97005 * 119.99625 * 265.00253 * 6 4 3 35 35 H 1.08005 * 119.94624 * 359.97438 * 10 9 7 36 36 H 1.08000 * 120.05927 * 179.73728 * 11 10 9 37 37 H 0.97002 * 119.99718 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.05588 * 179.73431 * 21 12 11 39 39 H 1.08002 * 119.94881 * 179.97438 * 22 21 12 40 40 H 1.08001 * 120.41603 * 0.02562 * 24 23 4 41 41 H 1.07997 * 119.61542 * 180.25666 * 25 24 23 42 42 H 1.07993 * 119.61903 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.41988 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4571 1.1403 6 7 2.2786 1.3221 2.4361 7 6 1.8698 0.1525 2.9665 8 8 2.1292 -0.8937 2.4041 9 6 1.1080 0.1417 4.2311 10 6 0.6848 -1.0747 4.7805 11 6 -0.0237 -1.0895 5.9449 12 6 -0.3211 0.1213 6.6013 13 6 -1.0500 0.1109 7.8094 14 1 -1.6169 0.9811 8.1055 15 6 -1.0384 -1.0293 8.6256 16 7 -0.1095 -1.9347 8.4698 17 14 -2.3510 -1.2537 9.9356 18 1 -3.2800 -0.0954 9.9089 19 1 -3.1086 -2.5027 9.6684 20 1 -1.7077 -1.3412 11.2711 21 6 0.1069 1.3427 6.0447 22 6 0.8105 1.3477 4.8771 23 6 3.8748 2.5823 1.1121 24 6 3.3721 3.8003 1.5435 25 6 4.1733 4.9239 1.4692 26 7 5.3978 4.8485 0.9856 27 6 5.9067 3.7084 0.5611 28 6 5.1666 2.5422 0.6098 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.0720 2.1568 2.8850 35 1 0.9159 -2.0025 4.2783 36 1 -0.3534 -2.0279 6.3657 37 1 -0.1016 -2.7236 9.0341 38 1 -0.1223 2.2736 6.5420 39 1 1.1387 2.2835 4.4494 40 1 2.3686 3.8693 1.9367 41 1 3.7906 5.8756 1.8071 42 1 6.9135 3.6857 0.1710 43 1 5.5890 1.6115 0.2611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759112742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:04 Heat of formation + Delta-G solvation = 15.460633 kcal Electronic energy + Delta-G solvation = -25801.885365 eV Core-core repulsion = 22197.063025 eV Total energy + Delta-G solvation = -3604.822340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54357 -40.54901 -39.02386 -37.26873 -35.68842 -34.75011 -33.43900 -32.12683 -31.89430 -31.30992 -29.68270 -27.62546 -25.51255 -24.55193 -23.77968 -22.90101 -22.04111 -21.17872 -20.75858 -19.36281 -18.81671 -17.78494 -17.28030 -16.93569 -16.73287 -16.47463 -16.03952 -15.84763 -15.72356 -15.10303 -14.99131 -14.87245 -14.52935 -14.50064 -14.38105 -14.04456 -13.98898 -13.56111 -13.21491 -13.11271 -12.83609 -12.73559 -12.62042 -12.37757 -12.35951 -11.88152 -11.74101 -11.35582 -11.12458 -10.79408 -10.54151 -10.51297 -10.44565 -10.07743 -9.77766 -9.55487 -9.39894 -8.78781 -6.47551 0.20000 0.20856 0.47476 1.16110 1.37340 1.41555 1.46937 1.54463 2.13514 2.19624 2.34507 2.80997 2.88937 3.37201 3.62292 3.71187 3.83988 4.06114 4.09895 4.19218 4.22837 4.27924 4.31739 4.42068 4.45325 4.48549 4.69846 4.70079 4.88897 4.93549 4.98041 4.98869 5.02698 5.10339 5.21390 5.26796 5.30596 5.58444 5.60776 5.75933 5.79589 5.81450 5.93228 5.97508 6.02795 6.21584 6.57262 6.72224 6.77867 6.90714 7.03217 7.50244 8.16439 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002872 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.112429 B = 9745.710634 C =10635.970360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.090 4.090 4 C 0.195 3.805 5 H 0.085 0.915 6 N -0.719 5.719 7 C 0.579 3.421 8 O -0.588 6.588 9 C -0.289 4.289 10 C -0.048 4.048 11 C -0.204 4.204 12 C 0.101 3.899 13 C -0.474 4.474 14 H 0.091 0.909 15 C 0.034 3.966 16 N -0.805 5.805 17 Si 0.987 3.013 18 H -0.251 1.251 19 H -0.265 1.265 20 H -0.264 1.264 21 C -0.246 4.246 22 C -0.040 4.040 23 C -0.051 4.051 24 C -0.168 4.168 25 C 0.096 3.904 26 N -0.511 5.511 27 C 0.095 3.905 28 C -0.164 4.164 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.294 0.706 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.178 0.822 42 H 0.180 0.820 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 9.951 -12.159 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.154 4.154 3 C -0.128 4.128 4 C 0.090 3.910 5 H 0.103 0.897 6 N -0.372 5.372 7 C 0.373 3.627 8 O -0.471 6.471 9 C -0.293 4.293 10 C -0.068 4.068 11 C -0.223 4.223 12 C 0.098 3.902 13 C -0.501 4.501 14 H 0.109 0.891 15 C -0.185 4.185 16 N -0.428 5.428 17 Si 0.807 3.193 18 H -0.175 1.175 19 H -0.190 1.190 20 H -0.188 1.188 21 C -0.265 4.265 22 C -0.058 4.058 23 C -0.060 4.060 24 C -0.188 4.188 25 C -0.060 4.060 26 N -0.220 5.220 27 C -0.061 4.061 28 C -0.184 4.184 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.243 0.757 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.166 0.834 41 H 0.195 0.805 42 H 0.197 0.803 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.011 9.775 -12.513 16.978 hybrid contribution -1.087 -1.202 1.043 1.927 sum 4.924 8.573 -11.470 15.143 Atomic orbital electron populations 1.23757 0.96134 1.01564 1.03000 1.22830 0.96062 0.98351 0.98120 1.21158 0.98142 0.95555 0.97944 1.19686 0.91850 0.95378 0.84088 0.89742 1.45804 1.57670 1.08766 1.24975 1.18196 0.77549 0.83139 0.83852 1.90612 1.59467 1.33167 1.63851 1.19205 1.15614 0.94378 1.00145 1.20524 0.95351 0.96298 0.94593 1.20934 1.06391 0.98679 0.96313 1.18128 0.88117 0.91925 0.92041 1.20156 1.25666 1.00762 1.03505 0.89132 1.26997 0.97017 0.93904 1.00551 1.69808 1.28770 1.08926 1.35324 0.85076 0.77881 0.79695 0.76672 1.17454 1.19011 1.18844 1.20931 1.08182 0.97222 1.00187 1.20678 0.95224 0.95942 0.93976 1.20337 0.94704 0.94501 0.96432 1.22155 1.02395 0.92830 1.01419 1.23144 0.89173 0.99386 0.94334 1.67724 1.14265 1.29332 1.10695 1.23171 1.00780 0.87225 0.94972 1.22247 0.93873 1.01357 1.00880 0.89668 0.87961 0.88722 0.90201 0.88233 0.75729 0.89117 0.88032 0.89462 0.86775 0.85102 0.83413 0.80463 0.80315 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.84 14.32 67.78 0.97 -4.87 16 2 C -0.14 -3.78 6.95 25.64 0.18 -3.61 16 3 C -0.09 -1.94 5.32 29.85 0.16 -1.78 16 4 C 0.19 4.60 2.48 44.24 0.11 4.71 16 5 H 0.08 2.29 7.48 -2.39 -0.02 2.27 16 6 N -0.72 -20.56 4.95 -449.17 -2.22 -22.78 16 7 C 0.58 22.59 7.08 86.73 0.61 23.21 16 8 O -0.59 -25.90 13.70 -3.96 -0.05 -25.95 16 9 C -0.29 -12.70 5.89 -19.93 -0.12 -12.82 16 10 C -0.05 -2.40 9.52 22.25 0.21 -2.19 16 11 C -0.20 -10.74 8.63 22.47 0.19 -10.54 16 12 C 0.10 5.19 5.57 -21.28 -0.12 5.07 16 13 C -0.47 -23.73 9.04 23.46 0.21 -23.51 16 14 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 15 C 0.03 1.59 5.14 85.35 0.44 2.03 16 16 N -0.80 -40.28 10.96 21.87 0.24 -40.04 16 17 Si 0.99 35.40 29.60 68.60 2.03 37.43 16 18 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 19 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 21 C -0.25 -11.01 9.73 22.47 0.22 -10.79 16 22 C -0.04 -1.57 9.47 22.25 0.21 -1.36 16 23 C -0.05 -0.99 4.98 -19.67 -0.10 -1.09 16 24 C -0.17 -2.92 9.15 22.36 0.20 -2.71 16 25 C 0.10 1.67 11.18 84.68 0.95 2.61 16 26 N -0.51 -10.30 10.36 -195.85 -2.03 -12.33 16 27 C 0.09 1.61 11.18 84.68 0.95 2.56 16 28 C -0.16 -2.80 9.78 22.36 0.22 -2.58 16 29 H 0.08 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 31 H 0.09 3.01 7.53 -2.91 -0.02 2.99 16 32 H 0.08 1.59 7.79 -2.39 -0.02 1.57 16 33 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.40 9.89 4.97 -92.70 -0.46 9.43 16 35 H 0.09 4.54 7.63 -2.91 -0.02 4.52 16 36 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 37 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 38 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.13 3.94 6.37 -2.91 -0.02 3.93 16 40 H 0.15 2.09 7.03 -2.91 -0.02 2.07 16 41 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -63.88 363.75 4.03 -59.84 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: 0.57 Total: 41.49 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 5.50 Total: -37.66 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -4.01 Total: -75.15 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -63.88 4.03 -59.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759112742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.304 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds