Wall clock time and date at job start Tue Mar 31 2020 13:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47374 * 2 1 4 4 N 1.46505 * 109.47247 * 240.00072 * 2 1 3 5 5 C 1.34776 * 120.00028 * 59.99550 * 4 2 1 6 6 O 1.21594 * 119.99709 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00153 * 180.02562 * 5 4 2 8 8 C 1.40139 * 120.00068 * 175.63101 * 7 5 4 9 9 C 1.38697 * 120.07174 * 34.59518 * 8 7 5 10 10 C 1.38209 * 120.01666 * 179.77075 * 9 8 7 11 11 C 1.38543 * 120.17332 * 0.50482 * 10 9 8 12 12 F 1.35099 * 119.92034 * 179.76776 * 11 10 9 13 13 C 1.38346 * 120.15281 * 359.74855 * 11 10 9 14 14 C 1.38735 * 119.97532 * 0.02562 * 13 11 10 15 15 O 1.35783 * 120.08696 * 179.97438 * 14 13 11 16 16 C 1.34809 * 116.99886 * 5.42825 * 15 14 13 17 17 H 1.08005 * 120.00113 * 354.95419 * 16 15 14 18 18 C 1.38627 * 120.00222 * 174.95615 * 16 15 14 19 19 N 1.31573 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47589 * 59.99626 * 20 18 16 22 22 H 1.48498 * 109.47175 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46704 * 299.99250 * 20 18 16 24 24 C 1.53006 * 109.47524 * 120.00294 * 2 1 3 25 25 C 1.52998 * 117.51462 * 236.28533 * 24 2 1 26 26 C 1.53001 * 117.49360 * 304.91333 * 24 2 1 27 27 H 1.09003 * 109.46871 * 299.99623 * 1 2 3 28 28 H 1.08992 * 109.47218 * 59.99926 * 1 2 3 29 29 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47281 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46685 * 300.00147 * 3 2 1 32 32 H 1.08995 * 109.47103 * 60.00193 * 3 2 1 33 33 H 0.96998 * 120.00300 * 239.99927 * 4 2 1 34 34 H 0.96996 * 120.00172 * 355.63432 * 7 5 4 35 35 H 1.07993 * 119.99263 * 0.02562 * 9 8 7 36 36 H 1.08000 * 119.90970 * 180.23120 * 10 9 8 37 37 H 1.08000 * 120.00825 * 180.02562 * 13 11 10 38 38 H 0.96992 * 120.00305 * 180.02562 * 19 18 16 39 39 H 1.09000 * 115.54799 * 90.57925 * 24 2 1 40 40 H 1.08999 * 117.49409 * 214.96531 * 25 24 2 41 41 H 1.08994 * 117.50071 * 359.97438 * 25 24 2 42 42 H 1.09001 * 117.50106 * 359.97089 * 26 24 2 43 43 H 1.09000 * 117.49542 * 145.00005 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6927 -0.2302 -2.4203 6 8 0.9939 0.7586 -2.5318 7 7 2.1415 -0.8658 -3.5207 8 6 1.7291 -0.4427 -4.7915 9 6 1.5071 0.9041 -5.0375 10 6 1.1050 1.3205 -6.2925 11 6 0.9122 0.3946 -7.3049 12 9 0.5145 0.8069 -8.5284 13 6 1.1264 -0.9511 -7.0659 14 6 1.5347 -1.3756 -5.8097 15 8 1.7452 -2.6959 -5.5725 16 6 1.6492 -3.5301 -6.6271 17 1 1.3348 -3.1513 -7.5885 18 6 1.9542 -4.8741 -6.4778 19 7 2.3377 -5.3356 -5.3069 20 14 1.8219 -6.0299 -7.9394 21 1 2.7358 -5.5723 -9.0168 22 1 2.1991 -7.4036 -7.5200 23 1 0.4249 -6.0329 -8.4432 24 6 2.0401 -0.7213 1.2492 25 6 2.9858 0.0485 2.1732 26 6 1.5432 -0.2200 2.6067 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.5760 -1.4793 -1.1073 34 1 2.7500 -1.6161 -3.4332 35 1 1.6526 1.6280 -4.2494 36 1 0.9362 2.3701 -6.4832 37 1 0.9759 -1.6708 -7.8569 38 1 2.5514 -6.2759 -5.2025 39 1 2.2062 -1.7929 1.1384 40 1 3.7741 -0.5167 2.6704 41 1 3.2451 1.0689 1.8911 42 1 0.8534 0.6239 2.6098 43 1 1.3826 -0.9618 3.3890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761670410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:05 Heat of formation + Delta-G solvation = -43.917467 kcal Electronic energy + Delta-G solvation = -27305.982066 eV Core-core repulsion = 23267.815674 eV Total energy + Delta-G solvation = -4038.166392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.22347 -40.53080 -39.26318 -38.13772 -36.34620 -34.38289 -33.97434 -32.39949 -30.84002 -29.34923 -27.93234 -27.37614 -25.49548 -24.24377 -22.47848 -22.38767 -21.63389 -20.32546 -19.22625 -18.33208 -18.14023 -17.63130 -16.84951 -16.19133 -15.44495 -15.21674 -15.04680 -14.85415 -14.72896 -14.46246 -14.28224 -13.88075 -13.61768 -13.49004 -13.39009 -13.16660 -12.78945 -12.39890 -12.13106 -12.10560 -12.00485 -11.64953 -11.58608 -11.35965 -11.12647 -10.96263 -10.84011 -10.71020 -10.62048 -10.55474 -10.28727 -9.76486 -9.63123 -9.31524 -8.94731 -8.88614 -7.84274 -7.06943 -6.59364 -4.17261 1.88816 2.15573 2.89635 3.07974 3.08469 3.10910 3.47539 3.65036 3.86000 4.38379 4.42830 4.45239 4.73013 4.81104 4.88811 4.97144 4.98278 5.12901 5.14868 5.34613 5.42868 5.60438 5.65596 5.69130 5.70882 5.76810 5.90618 5.92641 5.94199 6.03692 6.06369 6.23846 6.36334 6.45862 6.61591 6.73795 6.78707 6.94182 6.96595 7.10661 7.20968 7.36125 7.69882 7.84962 8.34080 8.86321 8.93230 9.48686 10.57649 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.003745 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.614339 B = 7474.427232 C = 9516.346791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.226 3.774 3 C -0.166 4.166 4 N -0.738 5.738 5 C 0.708 3.292 6 O -0.582 6.582 7 N -0.666 5.666 8 C 0.079 3.921 9 C -0.050 4.050 10 C -0.228 4.228 11 C 0.127 3.873 12 F -0.152 7.152 13 C -0.259 4.259 14 C 0.156 3.844 15 O -0.168 6.168 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.159 4.159 25 C -0.181 4.181 26 C -0.169 4.169 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.397 0.603 34 H 0.410 0.590 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.272 0.728 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 7.992 11.538 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.140 3.860 3 C -0.224 4.224 4 N -0.393 5.393 5 C 0.409 3.591 6 O -0.461 6.461 7 N -0.312 5.312 8 C -0.016 4.016 9 C -0.071 4.071 10 C -0.249 4.249 11 C 0.107 3.893 12 F -0.131 7.131 13 C -0.280 4.280 14 C 0.100 3.900 15 O -0.071 6.071 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.161 4.161 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.178 4.178 25 C -0.218 4.218 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.246 0.754 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.868 8.504 11.760 14.539 hybrid contribution 0.373 -1.501 -0.919 1.799 sum 1.242 7.003 10.841 12.966 Atomic orbital electron populations 1.22238 0.94099 1.02393 1.03296 1.19484 0.93881 0.91274 0.81388 1.22363 1.00909 0.95715 1.03380 1.45225 1.57025 1.33196 1.03894 1.15843 0.79971 0.83124 0.80169 1.90799 1.42723 1.27110 1.85478 1.42231 1.49601 1.36444 1.02973 1.16651 1.10161 0.91254 0.83492 1.20675 0.97128 0.93402 0.95863 1.20489 1.12554 0.98728 0.93101 1.17459 0.99387 0.92623 0.79836 1.91407 1.88559 1.91121 1.42018 1.20836 1.13496 0.94539 0.99085 1.18833 0.94077 0.85321 0.91736 1.83936 1.76769 1.10582 1.35843 1.21301 1.47449 0.88692 0.89428 0.88917 1.25262 0.95940 0.96514 0.98420 1.69998 1.41280 1.15569 1.22657 0.85762 0.79288 0.78666 0.79699 1.19355 1.20215 1.19388 1.22471 1.04939 0.99539 0.90831 1.23189 0.93259 1.02140 1.03220 1.22944 0.97488 1.03457 0.96719 0.92265 0.89835 0.92706 0.92530 0.89810 0.92243 0.76919 0.75433 0.83912 0.86022 0.84038 0.91837 0.87286 0.88926 0.87878 0.88488 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.18 37.16 0.30 -1.75 16 2 C 0.23 2.65 0.92 -131.82 -0.12 2.53 16 3 C -0.17 -1.90 6.97 37.16 0.26 -1.65 16 4 N -0.74 -9.91 5.11 -52.41 -0.27 -10.18 16 5 C 0.71 12.09 7.83 -86.92 -0.68 11.41 16 6 O -0.58 -11.02 9.96 5.28 0.05 -10.97 16 7 N -0.67 -12.26 5.20 -14.07 -0.07 -12.34 16 8 C 0.08 1.65 6.33 -83.44 -0.53 1.12 16 9 C -0.05 -0.96 8.69 -39.42 -0.34 -1.31 16 10 C -0.23 -4.27 10.02 -39.48 -0.40 -4.66 16 11 C 0.13 2.55 7.29 -39.43 -0.29 2.27 16 12 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 13 C -0.26 -5.68 9.14 -39.36 -0.36 -6.04 16 14 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 15 O -0.17 -4.40 9.32 0.01 0.00 -4.40 16 16 C -0.39 -10.37 9.49 30.88 0.29 -10.08 16 17 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 18 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 19 N -0.86 -23.43 13.67 55.48 0.76 -22.68 16 20 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.16 -1.50 5.34 -90.62 -0.48 -1.98 16 25 C -0.18 -1.46 9.50 -26.73 -0.25 -1.72 16 26 C -0.17 -1.34 9.40 -26.73 -0.25 -1.59 16 27 H 0.06 0.62 7.00 -51.93 -0.36 0.26 16 28 H 0.08 1.30 6.16 -51.93 -0.32 0.98 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.62 7.23 -51.93 -0.38 0.24 16 31 H 0.08 1.18 6.16 -51.93 -0.32 0.86 16 32 H 0.06 0.58 7.18 -51.93 -0.37 0.20 16 33 H 0.40 4.65 8.42 -40.82 -0.34 4.30 16 34 H 0.41 7.25 8.59 -40.82 -0.35 6.90 16 35 H 0.14 2.65 6.19 -52.49 -0.32 2.33 16 36 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.14 3.10 5.64 -52.49 -0.30 2.81 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.11 1.01 8.04 -51.93 -0.42 0.59 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.83 5.82 -51.93 -0.30 0.52 16 42 H 0.10 0.75 7.08 -51.93 -0.37 0.38 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -29.09 352.16 -7.66 -36.75 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -5.25 Total: 15.80 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.20 Total: -9.07 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.42 Total: -45.19 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.05 Total: -15.37 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.09 -7.66 -36.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761670410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.163 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds