Wall clock time and date at job start Tue Mar 31 2020 13:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47374 * 2 1 4 4 N 1.46505 * 109.47247 * 240.00072 * 2 1 3 5 5 C 1.34776 * 120.00028 * 59.99550 * 4 2 1 6 6 O 1.21594 * 119.99709 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00153 * 180.02562 * 5 4 2 8 8 C 1.40139 * 120.00068 * 175.63101 * 7 5 4 9 9 C 1.38697 * 120.07174 * 34.59518 * 8 7 5 10 10 C 1.38209 * 120.01666 * 179.77075 * 9 8 7 11 11 C 1.38543 * 120.17332 * 0.50482 * 10 9 8 12 12 F 1.35099 * 119.92034 * 179.76776 * 11 10 9 13 13 C 1.38346 * 120.15281 * 359.74855 * 11 10 9 14 14 C 1.38735 * 119.97532 * 0.02562 * 13 11 10 15 15 O 1.35783 * 120.08696 * 179.97438 * 14 13 11 16 16 C 1.34809 * 116.99886 * 5.42825 * 15 14 13 17 17 H 1.08005 * 120.00113 * 354.95419 * 16 15 14 18 18 C 1.38627 * 120.00222 * 174.95615 * 16 15 14 19 19 N 1.31573 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47589 * 59.99626 * 20 18 16 22 22 H 1.48498 * 109.47175 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46704 * 299.99250 * 20 18 16 24 24 C 1.53006 * 109.47524 * 120.00294 * 2 1 3 25 25 C 1.52998 * 117.51462 * 236.28533 * 24 2 1 26 26 C 1.53001 * 117.49360 * 304.91333 * 24 2 1 27 27 H 1.09003 * 109.46871 * 299.99623 * 1 2 3 28 28 H 1.08992 * 109.47218 * 59.99926 * 1 2 3 29 29 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47281 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46685 * 300.00147 * 3 2 1 32 32 H 1.08995 * 109.47103 * 60.00193 * 3 2 1 33 33 H 0.96998 * 120.00300 * 239.99927 * 4 2 1 34 34 H 0.96996 * 120.00172 * 355.63432 * 7 5 4 35 35 H 1.07993 * 119.99263 * 0.02562 * 9 8 7 36 36 H 1.08000 * 119.90970 * 180.23120 * 10 9 8 37 37 H 1.08000 * 120.00825 * 180.02562 * 13 11 10 38 38 H 0.96992 * 120.00305 * 180.02562 * 19 18 16 39 39 H 1.09000 * 115.54799 * 90.57925 * 24 2 1 40 40 H 1.08999 * 117.49409 * 214.96531 * 25 24 2 41 41 H 1.08994 * 117.50071 * 359.97438 * 25 24 2 42 42 H 1.09001 * 117.50106 * 359.97089 * 26 24 2 43 43 H 1.09000 * 117.49542 * 145.00005 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6927 -0.2302 -2.4203 6 8 0.9939 0.7586 -2.5318 7 7 2.1415 -0.8658 -3.5207 8 6 1.7291 -0.4427 -4.7915 9 6 1.5071 0.9041 -5.0375 10 6 1.1050 1.3205 -6.2925 11 6 0.9122 0.3946 -7.3049 12 9 0.5145 0.8069 -8.5284 13 6 1.1264 -0.9511 -7.0659 14 6 1.5347 -1.3756 -5.8097 15 8 1.7452 -2.6959 -5.5725 16 6 1.6492 -3.5301 -6.6271 17 1 1.3348 -3.1513 -7.5885 18 6 1.9542 -4.8741 -6.4778 19 7 2.3377 -5.3356 -5.3069 20 14 1.8219 -6.0299 -7.9394 21 1 2.7358 -5.5723 -9.0168 22 1 2.1991 -7.4036 -7.5200 23 1 0.4249 -6.0329 -8.4432 24 6 2.0401 -0.7213 1.2492 25 6 2.9858 0.0485 2.1732 26 6 1.5432 -0.2200 2.6067 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.5760 -1.4793 -1.1073 34 1 2.7500 -1.6161 -3.4332 35 1 1.6526 1.6280 -4.2494 36 1 0.9362 2.3701 -6.4832 37 1 0.9759 -1.6708 -7.8569 38 1 2.5514 -6.2759 -5.2025 39 1 2.2062 -1.7929 1.1384 40 1 3.7741 -0.5167 2.6704 41 1 3.2451 1.0689 1.8911 42 1 0.8534 0.6239 2.6098 43 1 1.3826 -0.9618 3.3890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761670410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:04 Heat of formation + Delta-G solvation = -60.981523 kcal Electronic energy + Delta-G solvation = -27306.722019 eV Core-core repulsion = 23267.815674 eV Total energy + Delta-G solvation = -4038.906345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.81510 -41.88086 -40.72561 -39.33273 -37.97752 -35.60350 -35.31119 -34.30274 -31.99431 -31.01880 -29.49950 -28.34109 -27.38137 -25.24749 -24.05197 -23.21421 -23.01360 -21.70156 -20.31032 -20.08765 -19.58404 -19.12121 -18.20941 -17.37099 -16.99705 -16.91382 -16.59026 -16.23869 -15.99941 -15.87866 -15.44301 -15.36032 -15.15909 -15.02862 -14.90200 -14.36156 -14.02747 -13.78477 -13.61556 -13.39895 -13.18172 -13.00761 -12.91351 -12.54034 -12.44525 -12.32440 -12.16935 -11.94645 -11.82626 -11.62596 -11.31045 -11.09428 -11.04720 -10.82288 -10.73948 -10.04709 -9.52418 -8.72113 -8.50254 -6.16555 0.23756 0.48580 1.37110 1.45490 1.50729 1.62699 2.10750 2.15017 2.70179 2.89895 3.06736 3.17684 3.22774 3.47424 3.62796 3.96187 4.01257 4.09161 4.12630 4.17692 4.29326 4.38374 4.47022 4.62010 4.70424 4.77834 4.86189 4.96287 4.97484 4.98683 5.03452 5.06453 5.18578 5.24129 5.30745 5.32682 5.35334 5.38577 5.45004 5.63243 5.70360 5.93439 5.98458 6.11137 6.94142 7.01469 7.53807 7.65299 8.69873 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.003745 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.614339 B = 7474.427232 C = 9516.346791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.222 3.778 3 C -0.160 4.160 4 N -0.726 5.726 5 C 0.705 3.295 6 O -0.600 6.600 7 N -0.669 5.669 8 C 0.081 3.919 9 C -0.050 4.050 10 C -0.203 4.203 11 C 0.120 3.880 12 F -0.145 7.145 13 C -0.265 4.265 14 C 0.129 3.871 15 O -0.202 6.202 16 C -0.418 4.418 17 H 0.098 0.902 18 C -0.008 4.008 19 N -0.905 5.905 20 Si 1.010 2.990 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.263 1.263 24 C -0.172 4.172 25 C -0.174 4.174 26 C -0.160 4.160 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.405 0.595 34 H 0.411 0.589 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.274 0.726 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 9.138 12.359 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 C -0.217 4.217 4 N -0.381 5.381 5 C 0.406 3.594 6 O -0.480 6.480 7 N -0.316 5.316 8 C -0.014 4.014 9 C -0.071 4.071 10 C -0.223 4.223 11 C 0.100 3.900 12 F -0.124 7.124 13 C -0.286 4.286 14 C 0.076 3.924 15 O -0.108 6.108 16 C -0.493 4.493 17 H 0.116 0.884 18 C -0.207 4.207 19 N -0.542 5.542 20 Si 0.830 3.170 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.187 1.187 24 C -0.191 4.191 25 C -0.210 4.210 26 C -0.197 4.197 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.241 0.759 34 H 0.247 0.753 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.979 9.688 12.612 15.934 hybrid contribution 0.300 -1.594 -1.090 1.955 sum 1.279 8.094 11.522 14.139 Atomic orbital electron populations 1.22190 0.94895 1.01712 1.02875 1.19668 0.93325 0.91804 0.81532 1.22294 1.01202 0.95227 1.03015 1.45270 1.56313 1.33255 1.03258 1.15970 0.79820 0.82866 0.80706 1.90783 1.43477 1.27915 1.85864 1.42286 1.49834 1.36699 1.02816 1.16911 1.08985 0.91547 0.84003 1.20873 0.96862 0.92824 0.96501 1.20884 1.09295 1.00173 0.91966 1.17455 0.99858 0.92101 0.80558 1.91424 1.88470 1.90895 1.41611 1.20915 1.13427 0.95543 0.98677 1.19189 0.95237 0.85002 0.93021 1.83914 1.78941 1.11717 1.36183 1.21709 1.48205 0.89465 0.89954 0.88442 1.26357 0.95319 0.97747 1.01320 1.70110 1.43213 1.16052 1.24804 0.84757 0.79568 0.76461 0.76208 1.18381 1.19424 1.18708 1.22360 1.06886 0.99516 0.90334 1.23256 0.93628 1.02048 1.02093 1.23051 0.97495 1.03614 0.95554 0.89941 0.92924 0.93473 0.91937 0.92558 0.90151 0.75915 0.75321 0.82774 0.82522 0.84711 0.91645 0.87190 0.87857 0.87685 0.88028 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 8.18 71.98 0.59 -3.33 16 2 C 0.22 4.97 0.92 3.60 0.00 4.97 16 3 C -0.16 -3.44 6.97 71.98 0.50 -2.93 16 4 N -0.73 -19.31 5.11 -438.00 -2.24 -21.55 16 5 C 0.71 24.20 7.83 179.06 1.40 25.60 16 6 O -0.60 -22.70 9.96 -4.01 -0.04 -22.74 16 7 N -0.67 -25.13 5.20 -316.70 -1.65 -26.78 16 8 C 0.08 3.41 6.33 38.22 0.24 3.65 16 9 C -0.05 -1.87 8.69 22.37 0.19 -1.67 16 10 C -0.20 -7.13 10.02 22.34 0.22 -6.91 16 11 C 0.12 4.70 7.29 22.37 0.16 4.86 16 12 F -0.15 -5.36 17.26 44.97 0.78 -4.58 16 13 C -0.26 -11.77 9.14 22.41 0.20 -11.57 16 14 C 0.13 6.14 6.66 22.68 0.15 6.29 16 15 O -0.20 -11.04 9.32 -22.90 -0.21 -11.25 16 16 C -0.42 -22.83 9.49 67.91 0.64 -22.18 16 17 H 0.10 5.01 5.20 -2.91 -0.02 5.00 16 18 C -0.01 -0.41 5.49 84.82 0.47 0.05 16 19 N -0.91 -50.90 13.67 21.61 0.30 -50.60 16 20 Si 1.01 40.83 29.55 68.60 2.03 42.85 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 C -0.17 -2.92 5.34 -10.79 -0.06 -2.97 16 25 C -0.17 -2.33 9.50 30.60 0.29 -2.03 16 26 C -0.16 -2.09 9.40 30.60 0.29 -1.81 16 27 H 0.08 1.60 7.00 -2.39 -0.02 1.59 16 28 H 0.05 1.64 6.16 -2.39 -0.01 1.63 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.26 7.23 -2.38 -0.02 1.24 16 31 H 0.06 1.55 6.16 -2.38 -0.01 1.54 16 32 H 0.08 1.37 7.18 -2.39 -0.02 1.35 16 33 H 0.41 9.41 8.42 -92.71 -0.78 8.63 16 34 H 0.41 15.09 8.59 -92.71 -0.80 14.30 16 35 H 0.15 5.49 6.19 -2.91 -0.02 5.47 16 36 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.14 6.08 5.64 -2.91 -0.02 6.06 16 38 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.38 5.82 -2.39 -0.01 1.37 16 42 H 0.10 1.25 7.08 -2.39 -0.02 1.23 16 43 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -64.28 352.16 3.78 -60.50 By element: Atomic # 1 Polarization: 44.64 SS G_CDS: -0.49 Total: 44.15 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 5.31 Total: -9.99 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.59 Total: -98.93 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.25 Total: -34.00 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.78 Total: -4.58 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -64.28 3.78 -60.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761670410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.486 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds