Wall clock time and date at job start Tue Mar 31 2020 13:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99870 * 2 1 4 4 C 1.53002 * 109.46771 * 125.00371 * 3 2 1 5 5 C 1.53000 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47006 * 180.02562 * 5 4 3 7 7 N 1.46512 * 109.46872 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99788 * 180.02562 * 7 6 5 9 9 O 1.21600 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00035 * 180.27641 * 8 7 6 11 11 C 1.40138 * 120.00166 * 174.05264 * 10 8 7 12 12 C 1.38694 * 120.07209 * 335.23100 * 11 10 8 13 13 C 1.38203 * 120.01409 * 179.71932 * 12 11 10 14 14 C 1.38538 * 120.17789 * 0.55532 * 13 12 11 15 15 F 1.35105 * 119.92759 * 179.74374 * 14 13 12 16 16 C 1.38343 * 120.15214 * 359.72250 * 14 13 12 17 17 C 1.38741 * 119.97488 * 359.97438 * 16 14 13 18 18 O 1.35783 * 120.08715 * 180.02562 * 17 16 14 19 19 C 1.34808 * 116.99771 * 5.20572 * 18 17 16 20 20 H 1.08003 * 120.00234 * 354.97460 * 19 18 17 21 21 C 1.38635 * 120.00004 * 174.97560 * 19 18 17 22 22 N 1.31568 * 120.00275 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47493 * 89.99974 * 23 21 19 25 25 H 1.48500 * 109.46898 * 209.99949 * 23 21 19 26 26 H 1.48505 * 109.47169 * 329.99710 * 23 21 19 27 27 H 1.07997 * 119.99936 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00012 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00012 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47413 * 5.00391 * 3 2 1 31 31 H 1.08995 * 109.47592 * 245.00441 * 3 2 1 32 32 H 1.09000 * 109.47568 * 60.00165 * 4 3 2 33 33 H 1.09003 * 109.47389 * 299.99763 * 4 3 2 34 34 H 1.09001 * 109.47520 * 59.99810 * 5 4 3 35 35 H 1.09003 * 109.47105 * 299.99722 * 5 4 3 36 36 H 1.08995 * 109.47307 * 60.00253 * 6 5 4 37 37 H 1.08997 * 109.47129 * 299.99125 * 6 5 4 38 38 H 0.96998 * 120.00122 * 0.02562 * 7 6 5 39 39 H 0.97002 * 119.99705 * 354.05574 * 10 8 7 40 40 H 1.07999 * 119.99259 * 359.97438 * 12 11 10 41 41 H 1.08002 * 119.90963 * 180.25088 * 13 12 11 42 42 H 1.08002 * 120.01361 * 180.02562 * 16 14 13 43 43 H 0.96998 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7717 2.6859 2.3633 7 7 5.5042 3.9547 2.3633 8 6 6.4217 4.2031 3.3188 9 8 6.6412 3.3743 4.1811 10 7 7.0916 5.3725 3.3221 11 6 7.9531 5.6836 4.3827 12 6 7.7606 5.1031 5.6276 13 6 8.6144 5.4063 6.6712 14 6 9.6571 6.2985 6.4812 15 9 10.4856 6.5952 7.5063 16 6 9.8522 6.8861 5.2440 17 6 9.0027 6.5815 4.1903 18 8 9.1924 7.1564 2.9749 19 6 10.2865 7.9302 2.8280 20 1 10.9210 8.1352 3.6777 21 6 10.5973 8.4627 1.5863 22 7 11.6648 9.2183 1.4431 23 14 9.4995 8.1087 0.1170 24 1 8.4457 9.1508 0.0238 25 1 10.3153 8.1175 -1.1238 26 1 8.8648 6.7764 0.2828 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.7401 0.5065 1.0920 33 1 2.4774 1.2355 2.1131 34 1 3.0945 3.4846 1.2719 35 1 4.3574 2.7563 0.2507 36 1 5.4769 1.8597 2.2729 37 1 4.2143 2.5878 3.2948 38 1 5.3289 4.6160 1.6757 39 1 6.9774 5.9989 2.5903 40 1 6.9458 4.4109 5.7803 41 1 8.4654 4.9502 7.6388 42 1 10.6660 7.5810 5.0983 43 1 11.8824 9.5906 0.5742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771179516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:34 Heat of formation + Delta-G solvation = -65.749576 kcal Electronic energy + Delta-G solvation = -25895.480083 eV Core-core repulsion = 21856.366980 eV Total energy + Delta-G solvation = -4039.113103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.25241 -40.42604 -38.98562 -37.17754 -36.48533 -35.04721 -34.20535 -32.54658 -32.47928 -29.59464 -29.00999 -27.70135 -25.43092 -24.05598 -22.44723 -21.67060 -21.60477 -20.54000 -20.13709 -18.42327 -18.20834 -17.77164 -16.91836 -16.36184 -15.76069 -15.42743 -15.34972 -15.15368 -15.02517 -14.81425 -14.21156 -14.10935 -14.04201 -13.84861 -13.49151 -13.45381 -13.23915 -12.79497 -12.45797 -12.35579 -12.28115 -11.88795 -11.80260 -11.55128 -11.44338 -11.20212 -10.98802 -10.97287 -10.80461 -10.47741 -9.99452 -9.78249 -9.71802 -9.54958 -9.10387 -9.00511 -7.94860 -7.16748 -6.53912 -4.21086 1.77915 1.88932 2.03214 2.74787 3.09640 3.12423 3.21789 3.31424 4.08280 4.22293 4.28848 4.39880 4.54047 4.55487 4.59443 4.78269 4.95365 5.01316 5.02321 5.06881 5.18567 5.38910 5.42059 5.47781 5.50411 5.57812 5.70343 5.73139 5.88930 5.91565 5.93626 6.07551 6.24061 6.36800 6.38194 6.49531 6.62711 6.82847 6.89757 6.99691 7.13316 7.47184 7.66027 7.87989 8.09810 8.68761 8.79133 9.34169 10.53392 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.002807 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.110313 B = 9973.771246 C =12299.071539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.139 3.861 7 N -0.748 5.748 8 C 0.703 3.297 9 O -0.580 6.580 10 N -0.667 5.667 11 C 0.085 3.915 12 C -0.064 4.064 13 C -0.216 4.216 14 C 0.123 3.877 15 F -0.149 7.149 16 C -0.242 4.242 17 C 0.160 3.840 18 O -0.212 6.212 19 C -0.390 4.390 20 H 0.109 0.891 21 C 0.065 3.935 22 N -0.873 5.873 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.261 1.261 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.409 0.591 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.196 -12.384 -2.567 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.171 4.171 6 C 0.015 3.985 7 N -0.404 5.404 8 C 0.404 3.596 9 O -0.458 6.458 10 N -0.313 5.313 11 C -0.010 4.010 12 C -0.084 4.084 13 C -0.236 4.236 14 C 0.103 3.897 15 F -0.128 7.128 16 C -0.263 4.263 17 C 0.106 3.894 18 O -0.117 6.117 19 C -0.465 4.465 20 H 0.126 0.874 21 C -0.139 4.139 22 N -0.510 5.510 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.185 1.185 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.244 0.756 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.991 -13.014 -2.151 22.308 hybrid contribution -0.100 0.705 -1.226 1.417 sum -18.091 -12.309 -3.376 22.140 Atomic orbital electron populations 1.23867 0.96026 1.01824 1.01733 1.22997 0.96054 0.98642 0.99399 1.20782 0.98213 0.95364 0.98907 1.21433 0.97847 0.97077 0.98599 1.21832 0.98192 0.98633 0.98437 1.21189 0.93704 0.85065 0.98539 1.45112 1.42493 1.21101 1.31689 1.15864 0.79481 0.81950 0.82354 1.90864 1.69169 1.46653 1.39143 1.42256 1.45141 1.19153 1.24787 1.16708 0.93822 1.02435 0.88053 1.20812 0.99581 0.98922 0.89119 1.20564 0.98505 1.04139 1.00433 1.17462 0.90279 0.97695 0.84248 1.91425 1.70992 1.92316 1.58090 1.20952 1.05658 1.08135 0.91567 1.18392 0.92044 0.92779 0.86235 1.83486 1.43950 1.57414 1.26858 1.20750 1.01151 1.26063 0.98530 0.87383 1.24470 0.96221 0.95346 0.97896 1.69642 1.24245 1.31257 1.25837 0.86186 0.80249 0.79753 0.80676 1.19760 1.20668 1.18504 0.88614 0.88630 0.87389 0.91439 0.90869 0.91346 0.91411 0.91162 0.91106 0.91556 0.91541 0.76956 0.75615 0.83202 0.85750 0.83338 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 14.32 29.01 0.42 -0.77 16 2 C -0.15 -0.95 9.52 -36.03 -0.34 -1.29 16 3 C -0.10 -0.56 5.66 -27.88 -0.16 -0.72 16 4 C -0.11 -0.69 5.20 -26.73 -0.14 -0.83 16 5 C -0.13 -0.89 5.33 -26.73 -0.14 -1.03 16 6 C 0.14 1.35 5.68 -4.03 -0.02 1.33 16 7 N -0.75 -8.68 5.56 -65.22 -0.36 -9.04 16 8 C 0.70 11.31 8.37 -86.92 -0.73 10.58 16 9 O -0.58 -11.01 13.51 5.28 0.07 -10.93 16 10 N -0.67 -11.39 5.30 -14.07 -0.07 -11.47 16 11 C 0.08 1.68 6.45 -83.44 -0.54 1.14 16 12 C -0.06 -1.19 8.71 -39.43 -0.34 -1.53 16 13 C -0.22 -3.93 10.02 -39.48 -0.40 -4.32 16 14 C 0.12 2.44 7.29 -39.43 -0.29 2.16 16 15 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 16 C -0.24 -5.27 9.14 -39.36 -0.36 -5.63 16 17 C 0.16 3.53 6.66 -38.94 -0.26 3.27 16 18 O -0.21 -5.11 8.00 0.01 0.00 -5.11 16 19 C -0.39 -10.38 9.94 30.88 0.31 -10.07 16 20 H 0.11 3.00 5.44 -52.48 -0.29 2.71 16 21 C 0.06 1.72 5.49 -17.52 -0.10 1.63 16 22 N -0.87 -24.23 13.96 55.48 0.77 -23.45 16 23 Si 0.91 19.97 28.62 -169.99 -4.86 15.11 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 27 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 28 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 29 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 3.63 8.49 -40.82 -0.35 3.28 16 39 H 0.41 6.37 8.36 -40.82 -0.34 6.03 16 40 H 0.15 2.74 5.78 -52.49 -0.30 2.43 16 41 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.15 3.38 5.63 -52.49 -0.30 3.08 16 43 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -30.02 370.13 -7.68 -37.70 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.75 Total: 10.57 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.09 Total: -6.09 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.34 Total: -43.96 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.86 Total: 15.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.02 -7.68 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771179516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.050 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds