Wall clock time and date at job start Tue Mar 31 2020 13:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99870 * 2 1 4 4 C 1.53002 * 109.46771 * 125.00371 * 3 2 1 5 5 C 1.53000 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47006 * 180.02562 * 5 4 3 7 7 N 1.46512 * 109.46872 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99788 * 180.02562 * 7 6 5 9 9 O 1.21600 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00035 * 180.27641 * 8 7 6 11 11 C 1.40138 * 120.00166 * 174.05264 * 10 8 7 12 12 C 1.38694 * 120.07209 * 335.23100 * 11 10 8 13 13 C 1.38203 * 120.01409 * 179.71932 * 12 11 10 14 14 C 1.38538 * 120.17789 * 0.55532 * 13 12 11 15 15 F 1.35105 * 119.92759 * 179.74374 * 14 13 12 16 16 C 1.38343 * 120.15214 * 359.72250 * 14 13 12 17 17 C 1.38741 * 119.97488 * 359.97438 * 16 14 13 18 18 O 1.35783 * 120.08715 * 180.02562 * 17 16 14 19 19 C 1.34808 * 116.99771 * 5.20572 * 18 17 16 20 20 H 1.08003 * 120.00234 * 354.97460 * 19 18 17 21 21 C 1.38635 * 120.00004 * 174.97560 * 19 18 17 22 22 N 1.31568 * 120.00275 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47493 * 89.99974 * 23 21 19 25 25 H 1.48500 * 109.46898 * 209.99949 * 23 21 19 26 26 H 1.48505 * 109.47169 * 329.99710 * 23 21 19 27 27 H 1.07997 * 119.99936 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00012 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00012 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47413 * 5.00391 * 3 2 1 31 31 H 1.08995 * 109.47592 * 245.00441 * 3 2 1 32 32 H 1.09000 * 109.47568 * 60.00165 * 4 3 2 33 33 H 1.09003 * 109.47389 * 299.99763 * 4 3 2 34 34 H 1.09001 * 109.47520 * 59.99810 * 5 4 3 35 35 H 1.09003 * 109.47105 * 299.99722 * 5 4 3 36 36 H 1.08995 * 109.47307 * 60.00253 * 6 5 4 37 37 H 1.08997 * 109.47129 * 299.99125 * 6 5 4 38 38 H 0.96998 * 120.00122 * 0.02562 * 7 6 5 39 39 H 0.97002 * 119.99705 * 354.05574 * 10 8 7 40 40 H 1.07999 * 119.99259 * 359.97438 * 12 11 10 41 41 H 1.08002 * 119.90963 * 180.25088 * 13 12 11 42 42 H 1.08002 * 120.01361 * 180.02562 * 16 14 13 43 43 H 0.96998 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7717 2.6859 2.3633 7 7 5.5042 3.9547 2.3633 8 6 6.4217 4.2031 3.3188 9 8 6.6412 3.3743 4.1811 10 7 7.0916 5.3725 3.3221 11 6 7.9531 5.6836 4.3827 12 6 7.7606 5.1031 5.6276 13 6 8.6144 5.4063 6.6712 14 6 9.6571 6.2985 6.4812 15 9 10.4856 6.5952 7.5063 16 6 9.8522 6.8861 5.2440 17 6 9.0027 6.5815 4.1903 18 8 9.1924 7.1564 2.9749 19 6 10.2865 7.9302 2.8280 20 1 10.9210 8.1352 3.6777 21 6 10.5973 8.4627 1.5863 22 7 11.6648 9.2183 1.4431 23 14 9.4995 8.1087 0.1170 24 1 8.4457 9.1508 0.0238 25 1 10.3153 8.1175 -1.1238 26 1 8.8648 6.7764 0.2828 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.7401 0.5065 1.0920 33 1 2.4774 1.2355 2.1131 34 1 3.0945 3.4846 1.2719 35 1 4.3574 2.7563 0.2507 36 1 5.4769 1.8597 2.2729 37 1 4.2143 2.5878 3.2948 38 1 5.3289 4.6160 1.6757 39 1 6.9774 5.9989 2.5903 40 1 6.9458 4.4109 5.7803 41 1 8.4654 4.9502 7.6388 42 1 10.6660 7.5810 5.0983 43 1 11.8824 9.5906 0.5742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771179516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:33 Heat of formation + Delta-G solvation = -83.412849 kcal Electronic energy + Delta-G solvation = -25896.246020 eV Core-core repulsion = 21856.366980 eV Total energy + Delta-G solvation = -4039.879040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83628 -41.84208 -40.53289 -38.34522 -37.56992 -35.90099 -35.63577 -34.46567 -33.24172 -31.22097 -30.26488 -28.67971 -27.31068 -24.92791 -23.88647 -23.15708 -22.34671 -21.75560 -20.59472 -20.15234 -19.77958 -19.23171 -18.37665 -17.31985 -17.08991 -16.83194 -16.60942 -16.41841 -16.24434 -15.87458 -15.80296 -15.54421 -15.35987 -15.15002 -14.92791 -14.57014 -14.26052 -14.14177 -13.82738 -13.59743 -13.39384 -13.14439 -12.89013 -12.64548 -12.40954 -12.35472 -12.16324 -12.05890 -11.69470 -11.64955 -11.48099 -11.39745 -11.06819 -10.91983 -10.17102 -10.14123 -9.60706 -8.74737 -8.50784 -6.25029 0.17557 0.40230 1.33758 1.39356 1.42804 1.52041 1.58230 1.99611 2.27119 2.65787 2.76005 3.03328 3.15485 3.38931 3.82642 3.89725 4.02924 4.06013 4.14414 4.27658 4.28859 4.48912 4.50973 4.54318 4.67167 4.79295 4.88548 4.90324 4.95599 5.05890 5.10357 5.14388 5.17963 5.28580 5.35914 5.42964 5.46174 5.49829 5.60608 5.80710 5.82077 5.92995 5.93617 6.09560 6.80643 6.92523 7.38557 7.47856 8.60115 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.002807 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.110313 B = 9973.771246 C =12299.071539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.093 4.093 4 C -0.108 4.108 5 C -0.122 4.122 6 C 0.137 3.863 7 N -0.729 5.729 8 C 0.701 3.299 9 O -0.609 6.609 10 N -0.667 5.667 11 C 0.097 3.903 12 C -0.064 4.064 13 C -0.188 4.188 14 C 0.113 3.887 15 F -0.147 7.147 16 C -0.253 4.253 17 C 0.134 3.866 18 O -0.222 6.222 19 C -0.401 4.401 20 H 0.079 0.921 21 C 0.010 3.990 22 N -0.920 5.920 23 Si 0.974 3.026 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.250 1.250 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.412 0.588 39 H 0.416 0.584 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.127 0.873 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.913 -13.991 -3.113 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.181 4.181 3 C -0.130 4.130 4 C -0.146 4.146 5 C -0.159 4.159 6 C 0.014 3.986 7 N -0.385 5.385 8 C 0.402 3.598 9 O -0.490 6.490 10 N -0.314 5.314 11 C 0.001 3.999 12 C -0.084 4.084 13 C -0.208 4.208 14 C 0.092 3.908 15 F -0.126 7.126 16 C -0.274 4.274 17 C 0.082 3.918 18 O -0.128 6.128 19 C -0.477 4.477 20 H 0.096 0.904 21 C -0.189 4.189 22 N -0.560 5.560 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.201 1.201 26 H -0.173 1.173 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.248 0.752 39 H 0.253 0.747 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.145 0.855 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.758 -14.638 -2.701 25.543 hybrid contribution 0.662 1.052 -0.832 1.496 sum -20.095 -13.586 -3.533 24.513 Atomic orbital electron populations 1.24013 0.96142 1.02357 1.01413 1.23119 0.96290 0.99006 0.99707 1.20760 0.98147 0.95305 0.98814 1.21393 0.97796 0.96716 0.98720 1.21757 0.97662 0.99312 0.97210 1.21345 0.93748 0.83672 0.99852 1.45068 1.40841 1.21990 1.30618 1.16008 0.79809 0.81181 0.82852 1.90836 1.70185 1.47369 1.40583 1.42263 1.44828 1.19882 1.24454 1.16848 0.92954 1.00877 0.89255 1.21043 0.99965 0.98751 0.88679 1.20954 0.96358 1.01797 1.01705 1.17496 0.91186 0.98402 0.83671 1.91430 1.71053 1.92385 1.57687 1.20958 1.05315 1.08231 0.92863 1.18688 0.93207 0.94082 0.85805 1.83434 1.43236 1.58358 1.27805 1.20635 1.01880 1.27025 0.98147 0.90373 1.25368 0.97699 0.95001 1.00835 1.69744 1.26347 1.33052 1.26853 0.85173 0.78488 0.80281 0.76573 1.18376 1.20116 1.17316 0.88046 0.88279 0.87146 0.91122 0.90528 0.91473 0.91619 0.90069 0.90388 0.92537 0.91887 0.75207 0.74747 0.81938 0.82238 0.85518 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.16 -1.75 9.52 25.64 0.24 -1.51 16 3 C -0.09 -0.89 5.66 29.85 0.17 -0.72 16 4 C -0.11 -1.09 5.20 30.59 0.16 -0.93 16 5 C -0.12 -1.27 5.33 30.59 0.16 -1.11 16 6 C 0.14 2.34 5.68 86.38 0.49 2.83 16 7 N -0.73 -14.94 5.56 -478.51 -2.66 -17.60 16 8 C 0.70 20.97 8.37 179.06 1.50 22.47 16 9 O -0.61 -21.81 13.51 -4.03 -0.05 -21.87 16 10 N -0.67 -21.54 5.30 -316.70 -1.68 -23.21 16 11 C 0.10 3.70 6.45 38.22 0.25 3.94 16 12 C -0.06 -2.23 8.71 22.37 0.19 -2.04 16 13 C -0.19 -6.35 10.02 22.33 0.22 -6.13 16 14 C 0.11 4.38 7.29 22.37 0.16 4.55 16 15 F -0.15 -5.56 17.26 44.97 0.78 -4.79 16 16 C -0.25 -11.29 9.14 22.42 0.20 -11.08 16 17 C 0.13 5.99 6.66 22.68 0.15 6.14 16 18 O -0.22 -10.84 8.00 -22.88 -0.18 -11.03 16 19 C -0.40 -22.24 9.94 67.91 0.68 -21.56 16 20 H 0.08 4.66 5.44 -2.91 -0.02 4.65 16 21 C 0.01 0.55 5.49 84.83 0.47 1.01 16 22 N -0.92 -52.94 13.96 21.61 0.30 -52.64 16 23 Si 0.97 41.04 28.62 68.60 1.96 43.00 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 27 H 0.10 0.90 8.06 -2.91 -0.02 0.87 16 28 H 0.10 0.93 7.84 -2.91 -0.02 0.91 16 29 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.07 0.63 7.79 -2.39 -0.02 0.61 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.41 6.18 8.49 -92.71 -0.79 5.39 16 39 H 0.42 12.14 8.36 -92.71 -0.78 11.36 16 40 H 0.16 5.44 5.78 -2.91 -0.02 5.43 16 41 H 0.16 4.30 8.06 -2.91 -0.02 4.27 16 42 H 0.13 6.18 5.63 -2.91 -0.02 6.17 16 43 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -66.01 370.13 3.98 -62.04 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.51 Total: 31.37 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 6.02 Total: -5.27 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.04 Total: -93.46 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.24 Total: -32.89 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.78 Total: -4.79 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.96 Total: 43.00 kcal Total: -66.01 3.98 -62.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771179516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.374 kcal (2) G-P(sol) polarization free energy of solvation -66.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds