Wall clock time and date at job start Tue Mar 31 2020 13:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50697 * 119.99939 * 2 1 4 4 C 1.30999 * 120.00032 * 180.02562 * 2 1 3 5 5 C 1.50702 * 120.00216 * 8.25875 * 4 2 1 6 6 C 1.53001 * 109.47150 * 126.98304 * 5 4 2 7 7 N 1.46506 * 109.46874 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99711 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99912 * 180.27344 * 8 7 6 11 11 C 1.40135 * 120.00083 * 174.66072 * 10 8 7 12 12 C 1.38690 * 120.07492 * 33.72656 * 11 10 8 13 13 C 1.38201 * 120.02222 * 179.72402 * 12 11 10 14 14 C 1.38545 * 120.17124 * 0.54795 * 13 12 11 15 15 F 1.35105 * 119.92276 * 179.74808 * 14 13 12 16 16 C 1.38343 * 120.15571 * 359.72995 * 14 13 12 17 17 C 1.38739 * 119.97141 * 359.97438 * 16 14 13 18 18 O 1.35783 * 120.08426 * 180.02562 * 17 16 14 19 19 C 1.34807 * 117.00301 * 5.65566 * 18 17 16 20 20 H 1.08008 * 119.99481 * 4.75090 * 19 18 17 21 21 C 1.38633 * 120.00406 * 184.74376 * 19 18 17 22 22 N 1.31569 * 119.99788 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47084 * 89.99997 * 23 21 19 25 25 H 1.48496 * 109.47008 * 209.99947 * 23 21 19 26 26 H 1.48499 * 109.47254 * 330.00118 * 23 21 19 27 27 H 1.09000 * 109.46758 * 177.28549 * 1 2 3 28 28 H 1.08996 * 109.47289 * 297.28776 * 1 2 3 29 29 H 1.08995 * 109.47237 * 57.29080 * 1 2 3 30 30 H 1.09007 * 109.46854 * 269.99786 * 3 2 1 31 31 H 1.09000 * 109.47415 * 29.99387 * 3 2 1 32 32 H 1.09000 * 109.47056 * 150.00240 * 3 2 1 33 33 H 1.07997 * 120.00300 * 188.26053 * 4 2 1 34 34 H 1.09006 * 109.46860 * 6.98613 * 5 4 2 35 35 H 1.08997 * 109.47285 * 246.98737 * 5 4 2 36 36 H 1.08992 * 109.47012 * 60.00501 * 6 5 4 37 37 H 1.08992 * 109.47146 * 299.99969 * 6 5 4 38 38 H 0.97000 * 120.00159 * 359.97438 * 7 6 5 39 39 H 0.96999 * 120.00362 * 354.66597 * 10 8 7 40 40 H 1.07996 * 119.98823 * 359.97200 * 12 11 10 41 41 H 1.07998 * 119.91567 * 180.25422 * 13 12 11 42 42 H 1.07998 * 120.01391 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00392 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4203 -2.4328 -0.1886 6 6 2.0603 -3.2250 -1.3304 7 7 1.3388 -4.4869 -1.5135 8 6 1.7283 -5.3531 -2.4698 9 8 2.6782 -5.0871 -3.1807 10 7 1.0612 -6.5114 -2.6419 11 6 1.3941 -7.3603 -3.7061 12 6 2.7093 -7.4523 -4.1365 13 6 3.0373 -8.2940 -5.1824 14 6 2.0532 -9.0394 -5.8112 15 9 2.3787 -9.8568 -6.8365 16 6 0.7381 -8.9488 -5.3916 17 6 0.4028 -8.1104 -4.3383 18 8 -0.8872 -8.0202 -3.9242 19 6 -1.7744 -8.8569 -4.4987 20 1 -1.4344 -9.6090 -5.1953 21 6 -3.1230 -8.7520 -4.1954 22 7 -3.5372 -7.8355 -3.3471 23 14 -4.3522 -9.9119 -4.9910 24 1 -4.5104 -11.1219 -4.1448 25 1 -5.6631 -9.2273 -5.1258 26 1 -3.8604 -10.3085 -6.3349 27 1 -0.3633 -1.0265 -0.0487 28 1 -0.3633 0.4711 0.9133 29 1 -0.3633 0.5553 -0.8647 30 1 2.4422 1.6197 -1.0277 31 1 1.6714 2.0648 0.5137 32 1 3.2129 1.1747 0.5138 33 1 3.2336 -1.1394 0.1339 34 1 0.3781 -2.2240 -0.4306 35 1 1.4699 -3.0161 0.7309 36 1 3.1023 -3.4338 -1.0883 37 1 2.0106 -2.6418 -2.2498 38 1 0.5812 -4.6992 -0.9461 39 1 0.3506 -6.7576 -2.0293 40 1 3.4780 -6.8690 -3.6516 41 1 4.0627 -8.3674 -5.5134 42 1 -0.0271 -9.5312 -5.8832 43 1 -4.4808 -7.7618 -3.1351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792331097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:27 Heat of formation + Delta-G solvation = -63.905501 kcal Electronic energy + Delta-G solvation = -26091.177901 eV Core-core repulsion = 22052.144763 eV Total energy + Delta-G solvation = -4039.033138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.21831 -40.20979 -38.80422 -37.49068 -36.38149 -34.73353 -34.00044 -32.39869 -31.12210 -29.36558 -28.29957 -28.01124 -26.07483 -25.46396 -22.87135 -22.13222 -21.54893 -20.50421 -18.43013 -18.31313 -17.86955 -17.57916 -16.75307 -15.94176 -15.51543 -15.23819 -15.19404 -14.95997 -14.73198 -14.37089 -14.27297 -14.16250 -14.00052 -13.60600 -13.46964 -13.43290 -13.14553 -12.62628 -12.37947 -12.32568 -12.12486 -12.02649 -11.78048 -11.65663 -11.51883 -11.32158 -10.93380 -10.79761 -10.69389 -10.53705 -9.86065 -9.75762 -9.42629 -8.95655 -8.94182 -8.90628 -7.84490 -7.06793 -6.59670 -4.17329 1.87339 1.90869 2.15538 2.96182 3.06519 3.08274 3.12635 3.50610 3.85595 4.38518 4.41991 4.58964 4.72507 4.87372 4.89530 4.97979 4.98214 5.14384 5.15314 5.27348 5.38167 5.43394 5.52378 5.57145 5.61894 5.67819 5.77465 5.79337 5.90622 5.94914 6.07087 6.23914 6.45882 6.55160 6.66010 6.69056 6.73617 6.94024 6.97073 7.09892 7.17620 7.33491 7.69714 7.84689 8.29931 8.85735 8.89356 9.48495 10.57518 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.002975 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.525599 B = 9410.541325 C =11705.508886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 C -0.117 4.117 4 C -0.160 4.160 5 C -0.111 4.111 6 C 0.147 3.853 7 N -0.747 5.747 8 C 0.704 3.296 9 O -0.586 6.586 10 N -0.665 5.665 11 C 0.079 3.921 12 C -0.052 4.052 13 C -0.228 4.228 14 C 0.127 3.873 15 F -0.152 7.152 16 C -0.258 4.258 17 C 0.156 3.844 18 O -0.169 6.169 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.411 0.589 40 H 0.145 0.855 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 10.717 7.902 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 C -0.174 4.174 4 C -0.179 4.179 5 C -0.148 4.148 6 C 0.023 3.977 7 N -0.404 5.404 8 C 0.405 3.595 9 O -0.465 6.465 10 N -0.311 5.311 11 C -0.016 4.016 12 C -0.073 4.073 13 C -0.248 4.248 14 C 0.107 3.893 15 F -0.131 7.131 16 C -0.279 4.279 17 C 0.100 3.900 18 O -0.072 6.072 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.162 4.162 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.246 0.754 40 H 0.162 0.838 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.648 11.212 7.513 15.513 hybrid contribution -1.325 -0.918 -0.125 1.617 sum 6.323 10.294 7.388 14.161 Atomic orbital electron populations 1.21072 0.92386 1.03307 1.02010 1.21621 0.95937 0.95078 1.00476 1.20807 0.99496 0.94928 1.02131 1.22430 0.99596 0.93104 1.02778 1.21053 1.00420 0.94749 0.98609 1.21045 0.95596 0.82971 0.98131 1.45075 1.36583 1.20303 1.38394 1.15874 0.82849 0.79858 0.80938 1.90865 1.29837 1.77366 1.48394 1.42176 1.39548 1.18913 1.30488 1.16657 0.91581 0.98919 0.94488 1.20726 0.94157 0.96221 0.96168 1.20497 0.98553 1.03613 1.02150 1.17464 0.93385 0.91712 0.86755 1.91409 1.93461 1.70926 1.57289 1.20839 0.95510 1.08182 1.03325 1.18805 0.85805 0.94139 0.91235 1.83939 1.11752 1.54549 1.56947 1.21346 0.86619 1.12083 1.26754 0.88868 1.25268 0.96650 0.97641 0.96640 1.70009 1.16450 1.31702 1.31296 0.85690 0.79131 0.79143 0.79424 1.19762 1.20199 1.19067 0.90725 0.91549 0.91760 0.91328 0.92129 0.91951 0.87040 0.89740 0.90558 0.91693 0.91602 0.76829 0.75373 0.83777 0.85972 0.83989 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.89 36.01 0.36 -0.66 16 2 C -0.13 -1.09 6.04 -101.07 -0.61 -1.70 16 3 C -0.12 -0.80 10.04 36.00 0.36 -0.44 16 4 C -0.16 -1.38 9.11 -36.02 -0.33 -1.70 16 5 C -0.11 -0.98 5.48 -27.88 -0.15 -1.13 16 6 C 0.15 1.70 5.66 -4.04 -0.02 1.68 16 7 N -0.75 -9.97 5.56 -65.23 -0.36 -10.33 16 8 C 0.70 12.48 8.42 -86.92 -0.73 11.74 16 9 O -0.59 -12.01 13.68 5.28 0.07 -11.94 16 10 N -0.66 -12.39 5.21 -14.07 -0.07 -12.46 16 11 C 0.08 1.65 6.35 -83.44 -0.53 1.13 16 12 C -0.05 -1.03 8.71 -39.43 -0.34 -1.37 16 13 C -0.23 -4.32 10.02 -39.48 -0.40 -4.71 16 14 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 15 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 16 C -0.26 -5.69 9.11 -39.36 -0.36 -6.05 16 17 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 18 O -0.17 -4.41 9.30 0.01 0.00 -4.41 16 19 C -0.39 -10.34 9.45 30.88 0.29 -10.05 16 20 H 0.09 2.32 5.28 -52.48 -0.28 2.04 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -23.42 13.67 55.48 0.76 -22.66 16 23 Si 0.94 19.70 29.55 -169.99 -5.02 14.67 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H 0.07 0.58 5.07 -51.93 -0.26 0.32 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.06 0.37 8.12 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 33 H 0.11 0.89 8.01 -52.49 -0.42 0.47 16 34 H 0.08 0.73 5.17 -51.93 -0.27 0.46 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.40 4.40 8.49 -40.82 -0.35 4.06 16 39 H 0.41 7.18 8.57 -40.82 -0.35 6.84 16 40 H 0.14 2.78 6.10 -52.49 -0.32 2.46 16 41 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.14 3.13 5.70 -52.49 -0.30 2.83 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -30.40 367.06 -7.64 -38.04 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.48 Total: 13.05 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.11 Total: -6.59 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.32 Total: -45.45 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.35 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.40 -7.64 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792331097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.861 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds