Wall clock time and date at job start Tue Mar 31 2020 13:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50697 * 119.99939 * 2 1 4 4 C 1.30999 * 120.00032 * 180.02562 * 2 1 3 5 5 C 1.50702 * 120.00216 * 8.25875 * 4 2 1 6 6 C 1.53001 * 109.47150 * 126.98304 * 5 4 2 7 7 N 1.46506 * 109.46874 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99711 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99912 * 180.27344 * 8 7 6 11 11 C 1.40135 * 120.00083 * 174.66072 * 10 8 7 12 12 C 1.38690 * 120.07492 * 33.72656 * 11 10 8 13 13 C 1.38201 * 120.02222 * 179.72402 * 12 11 10 14 14 C 1.38545 * 120.17124 * 0.54795 * 13 12 11 15 15 F 1.35105 * 119.92276 * 179.74808 * 14 13 12 16 16 C 1.38343 * 120.15571 * 359.72995 * 14 13 12 17 17 C 1.38739 * 119.97141 * 359.97438 * 16 14 13 18 18 O 1.35783 * 120.08426 * 180.02562 * 17 16 14 19 19 C 1.34807 * 117.00301 * 5.65566 * 18 17 16 20 20 H 1.08008 * 119.99481 * 4.75090 * 19 18 17 21 21 C 1.38633 * 120.00406 * 184.74376 * 19 18 17 22 22 N 1.31569 * 119.99788 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47084 * 89.99997 * 23 21 19 25 25 H 1.48496 * 109.47008 * 209.99947 * 23 21 19 26 26 H 1.48499 * 109.47254 * 330.00118 * 23 21 19 27 27 H 1.09000 * 109.46758 * 177.28549 * 1 2 3 28 28 H 1.08996 * 109.47289 * 297.28776 * 1 2 3 29 29 H 1.08995 * 109.47237 * 57.29080 * 1 2 3 30 30 H 1.09007 * 109.46854 * 269.99786 * 3 2 1 31 31 H 1.09000 * 109.47415 * 29.99387 * 3 2 1 32 32 H 1.09000 * 109.47056 * 150.00240 * 3 2 1 33 33 H 1.07997 * 120.00300 * 188.26053 * 4 2 1 34 34 H 1.09006 * 109.46860 * 6.98613 * 5 4 2 35 35 H 1.08997 * 109.47285 * 246.98737 * 5 4 2 36 36 H 1.08992 * 109.47012 * 60.00501 * 6 5 4 37 37 H 1.08992 * 109.47146 * 299.99969 * 6 5 4 38 38 H 0.97000 * 120.00159 * 359.97438 * 7 6 5 39 39 H 0.96999 * 120.00362 * 354.66597 * 10 8 7 40 40 H 1.07996 * 119.98823 * 359.97200 * 12 11 10 41 41 H 1.07998 * 119.91567 * 180.25422 * 13 12 11 42 42 H 1.07998 * 120.01391 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00392 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4203 -2.4328 -0.1886 6 6 2.0603 -3.2250 -1.3304 7 7 1.3388 -4.4869 -1.5135 8 6 1.7283 -5.3531 -2.4698 9 8 2.6782 -5.0871 -3.1807 10 7 1.0612 -6.5114 -2.6419 11 6 1.3941 -7.3603 -3.7061 12 6 2.7093 -7.4523 -4.1365 13 6 3.0373 -8.2940 -5.1824 14 6 2.0532 -9.0394 -5.8112 15 9 2.3787 -9.8568 -6.8365 16 6 0.7381 -8.9488 -5.3916 17 6 0.4028 -8.1104 -4.3383 18 8 -0.8872 -8.0202 -3.9242 19 6 -1.7744 -8.8569 -4.4987 20 1 -1.4344 -9.6090 -5.1953 21 6 -3.1230 -8.7520 -4.1954 22 7 -3.5372 -7.8355 -3.3471 23 14 -4.3522 -9.9119 -4.9910 24 1 -4.5104 -11.1219 -4.1448 25 1 -5.6631 -9.2273 -5.1258 26 1 -3.8604 -10.3085 -6.3349 27 1 -0.3633 -1.0265 -0.0487 28 1 -0.3633 0.4711 0.9133 29 1 -0.3633 0.5553 -0.8647 30 1 2.4422 1.6197 -1.0277 31 1 1.6714 2.0648 0.5137 32 1 3.2129 1.1747 0.5138 33 1 3.2336 -1.1394 0.1339 34 1 0.3781 -2.2240 -0.4306 35 1 1.4699 -3.0161 0.7309 36 1 3.1023 -3.4338 -1.0883 37 1 2.0106 -2.6418 -2.2498 38 1 0.5812 -4.6992 -0.9461 39 1 0.3506 -6.7576 -2.0293 40 1 3.4780 -6.8690 -3.6516 41 1 4.0627 -8.3674 -5.5134 42 1 -0.0271 -9.5312 -5.8832 43 1 -4.4808 -7.7618 -3.1351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792331097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:27 Heat of formation + Delta-G solvation = -81.762931 kcal Electronic energy + Delta-G solvation = -26091.952257 eV Core-core repulsion = 22052.144763 eV Total energy + Delta-G solvation = -4039.807494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.81506 -41.72985 -40.41772 -38.40605 -37.91741 -35.85239 -35.54563 -34.30016 -32.07370 -31.03434 -29.75167 -28.67009 -27.41386 -26.89330 -24.24003 -23.49239 -22.92230 -21.94424 -20.14421 -19.75876 -19.24259 -18.63215 -18.28276 -17.16255 -16.98762 -16.76593 -16.56637 -16.42342 -15.99734 -15.88140 -15.59130 -15.30648 -15.23660 -14.98190 -14.85436 -14.68225 -14.41862 -14.00319 -13.74160 -13.43235 -13.17634 -13.03886 -12.98404 -12.86585 -12.57836 -12.38613 -12.32548 -12.21630 -12.14811 -11.67981 -11.49722 -11.31442 -11.00947 -10.81588 -10.14432 -9.56212 -9.53414 -8.72765 -8.50405 -6.16149 0.22586 0.47722 1.20984 1.37765 1.44473 1.52712 1.66349 2.05794 2.14881 2.69961 3.04784 3.17296 3.22125 3.46610 3.85550 3.96476 4.05251 4.14401 4.18241 4.20415 4.38440 4.47691 4.58039 4.64781 4.72595 4.84403 4.86960 4.94258 4.96419 5.01871 5.03210 5.08467 5.18382 5.23402 5.24695 5.31778 5.34542 5.48347 5.58528 5.82431 5.92385 5.95454 6.05436 6.09507 6.94303 6.95743 7.46389 7.64131 8.70191 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.002975 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.525599 B = 9410.541325 C =11705.508886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C -0.118 4.118 4 C -0.173 4.173 5 C -0.100 4.100 6 C 0.148 3.852 7 N -0.731 5.731 8 C 0.701 3.299 9 O -0.614 6.614 10 N -0.666 5.666 11 C 0.079 3.921 12 C -0.053 4.053 13 C -0.203 4.203 14 C 0.121 3.879 15 F -0.145 7.145 16 C -0.263 4.263 17 C 0.130 3.870 18 O -0.201 6.201 19 C -0.416 4.416 20 H 0.099 0.901 21 C -0.008 4.008 22 N -0.905 5.905 23 Si 1.011 2.989 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.259 1.259 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.410 0.590 39 H 0.414 0.586 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.136 0.864 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 10.920 8.034 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C -0.175 4.175 4 C -0.191 4.191 5 C -0.137 4.137 6 C 0.024 3.976 7 N -0.387 5.387 8 C 0.402 3.598 9 O -0.495 6.495 10 N -0.313 5.313 11 C -0.017 4.017 12 C -0.074 4.074 13 C -0.223 4.223 14 C 0.101 3.899 15 F -0.124 7.124 16 C -0.284 4.284 17 C 0.076 3.924 18 O -0.107 6.107 19 C -0.492 4.492 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.541 5.541 23 Si 0.831 3.169 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.183 1.183 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.250 0.750 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.527 11.435 7.673 16.197 hybrid contribution -1.349 -0.895 -0.164 1.628 sum 7.177 10.540 7.509 14.798 Atomic orbital electron populations 1.21122 0.92160 1.03304 1.02544 1.21868 0.96363 0.95627 0.99585 1.20845 0.99797 0.94443 1.02410 1.22474 0.99953 0.92968 1.03729 1.20962 1.00235 0.94690 0.97854 1.21156 0.95787 0.82016 0.98613 1.45040 1.36624 1.19925 1.37064 1.16022 0.82456 0.79894 0.81444 1.90831 1.31069 1.77870 1.49706 1.42191 1.39806 1.19198 1.30059 1.16910 0.91720 0.98476 0.94562 1.20912 0.93672 0.96359 0.96440 1.20885 0.99844 1.01209 1.00375 1.17455 0.92934 0.92273 0.87226 1.91427 1.93284 1.70728 1.56915 1.20916 0.96437 1.07929 1.03111 1.19144 0.85507 0.95470 0.92251 1.83915 1.12753 1.55632 1.58360 1.21739 0.87339 1.12809 1.27276 0.88401 1.26357 0.98144 0.99252 0.97050 1.70116 1.16992 1.33820 1.33204 0.84686 0.76452 0.77117 0.78682 1.18745 1.19595 1.18322 0.90955 0.90546 0.91748 0.91234 0.91266 0.91351 0.86526 0.89520 0.89323 0.91679 0.93090 0.75355 0.74971 0.82840 0.82487 0.84633 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.24 0.70 -1.21 16 2 C -0.13 -2.05 6.04 -16.49 -0.10 -2.14 16 3 C -0.12 -1.45 10.04 71.23 0.71 -0.74 16 4 C -0.17 -2.74 9.11 25.65 0.23 -2.50 16 5 C -0.10 -1.63 5.48 29.85 0.16 -1.47 16 6 C 0.15 3.29 5.66 86.38 0.49 3.78 16 7 N -0.73 -18.96 5.56 -478.53 -2.66 -21.62 16 8 C 0.70 24.55 8.42 179.06 1.51 26.05 16 9 O -0.61 -24.74 13.68 -4.03 -0.06 -24.80 16 10 N -0.67 -24.89 5.21 -316.70 -1.65 -26.54 16 11 C 0.08 3.32 6.35 38.22 0.24 3.57 16 12 C -0.05 -2.02 8.71 22.37 0.19 -1.82 16 13 C -0.20 -7.18 10.02 22.33 0.22 -6.96 16 14 C 0.12 4.73 7.29 22.37 0.16 4.89 16 15 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 16 C -0.26 -11.65 9.11 22.41 0.20 -11.45 16 17 C 0.13 6.15 6.66 22.68 0.15 6.30 16 18 O -0.20 -10.89 9.30 -22.87 -0.21 -11.10 16 19 C -0.42 -22.53 9.45 67.91 0.64 -21.89 16 20 H 0.10 4.99 5.28 -2.91 -0.02 4.98 16 21 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 22 N -0.90 -50.55 13.67 21.61 0.30 -50.25 16 23 Si 1.01 40.59 29.55 68.60 2.03 42.62 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 27 H 0.07 1.04 5.07 -2.39 -0.01 1.03 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 32 H 0.07 0.75 8.03 -2.39 -0.02 0.73 16 33 H 0.12 1.70 8.01 -2.91 -0.02 1.68 16 34 H 0.09 1.39 5.17 -2.38 -0.01 1.38 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.41 8.72 8.49 -92.71 -0.79 7.93 16 39 H 0.41 14.77 8.57 -92.71 -0.79 13.97 16 40 H 0.15 5.63 6.10 -2.91 -0.02 5.61 16 41 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.14 6.09 5.70 -2.91 -0.02 6.07 16 43 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -65.75 367.06 4.01 -61.73 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.51 Total: 40.07 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 6.00 Total: -5.55 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -4.01 Total: -98.41 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.27 Total: -35.90 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -65.75 4.01 -61.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792331097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.029 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds