Wall clock time and date at job start Tue Mar 31 2020 13:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35979 * 117.00093 * 2 1 4 4 C 1.38533 * 120.08475 * 0.02562 * 3 2 1 5 5 C 1.38258 * 120.01754 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.17843 * 0.02562 * 5 4 3 7 7 C 1.38201 * 120.16362 * 359.97286 * 6 5 4 8 8 C 1.38724 * 119.98633 * 0.02562 * 7 6 5 9 9 N 1.40111 * 120.09390 * 179.97438 * 8 7 6 10 10 C 1.34767 * 119.99915 * 44.18787 * 9 8 7 11 11 S 1.71198 * 120.00092 * 5.46743 * 10 9 8 12 12 N 1.34777 * 120.00186 * 185.46486 * 10 9 8 13 13 C 1.46505 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47241 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.46889 * 299.99708 * 14 13 12 16 16 C 1.53005 * 109.47486 * 59.99423 * 14 13 12 17 17 C 1.52994 * 109.47208 * 180.02562 * 14 13 12 18 18 C 1.50694 * 109.47452 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99990 * 359.97438 * 18 17 14 20 20 C 1.37881 * 120.00235 * 179.97438 * 18 17 14 21 21 N 1.31506 * 120.00011 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47493 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47317 * 120.00339 * 22 20 18 25 25 H 1.48505 * 109.47094 * 240.00169 * 22 20 18 26 26 H 1.09005 * 109.47660 * 59.99041 * 1 2 3 27 27 H 1.09002 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46872 * 299.99537 * 1 2 3 29 29 H 1.08005 * 119.99103 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.90910 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.92079 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.01050 * 179.74230 * 7 6 5 33 33 H 0.96994 * 119.99698 * 224.19776 * 9 8 7 34 34 H 0.97001 * 119.99771 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.46643 * 299.99858 * 13 12 10 36 36 H 1.08996 * 109.46888 * 59.99636 * 13 12 10 37 37 H 1.08997 * 109.47125 * 60.00188 * 15 14 13 38 38 H 1.08995 * 109.46548 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46910 * 300.00167 * 15 14 13 40 40 H 1.09005 * 109.46435 * 60.00123 * 16 14 13 41 41 H 1.08995 * 109.47018 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.46662 * 300.00483 * 16 14 13 43 43 H 1.09005 * 109.47029 * 300.00071 * 17 14 13 44 44 H 1.09001 * 109.47309 * 59.99393 * 17 14 13 45 45 H 0.96995 * 120.00386 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2936 2.3745 0.0005 5 6 1.9227 3.6057 0.0000 6 6 3.3034 3.6807 -0.0016 7 6 4.0616 2.5253 -0.0021 8 6 3.4374 1.2864 -0.0016 9 7 4.2039 0.1135 -0.0026 10 6 5.2741 0.0072 0.8096 11 16 5.6158 1.2451 1.9417 12 7 6.0753 -1.0737 0.7307 13 6 7.2383 -1.1896 1.6141 14 6 7.9725 -2.4996 1.3214 15 6 7.0281 -3.6787 1.5643 16 6 8.4363 -2.5096 -0.1366 17 6 9.1867 -2.6209 2.2443 18 6 9.9095 -3.9115 1.9565 19 1 9.5396 -4.5787 1.1921 20 6 11.0431 -4.2405 2.6691 21 7 11.4933 -3.4283 3.6003 22 14 11.9395 -5.8399 2.3118 23 1 11.2361 -6.5699 1.2266 24 1 13.3312 -5.5433 1.8870 25 1 11.9641 -6.6780 3.5375 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2149 2.3195 0.0014 30 1 1.3341 4.5112 0.0008 31 1 3.7905 4.6446 -0.0024 32 1 5.1398 2.5867 -0.0076 33 1 3.9644 -0.6218 -0.5880 34 1 5.8819 -1.7749 0.0890 35 1 7.9112 -0.3498 1.4407 36 1 6.9078 -1.1820 2.6527 37 1 6.1628 -3.5925 0.9071 38 1 7.5514 -4.6119 1.3562 39 1 6.6977 -3.6715 2.6030 40 1 9.1091 -1.6696 -0.3096 41 1 8.9598 -3.4427 -0.3449 42 1 7.5709 -2.4234 -0.7937 43 1 9.8596 -1.7808 2.0718 44 1 8.8558 -2.6139 3.2829 45 1 12.2905 -3.6599 4.1019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806596958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:25 Heat of formation + Delta-G solvation = -1.670159 kcal Electronic energy + Delta-G solvation = -24562.256888 eV Core-core repulsion = 21092.135653 eV Total energy + Delta-G solvation = -3470.121235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75798 -39.14107 -37.86629 -36.73173 -34.30395 -32.29440 -30.41614 -29.90205 -27.58166 -27.21255 -26.65394 -26.33264 -24.27670 -22.87524 -22.35165 -22.12223 -18.99430 -18.95499 -17.88003 -17.32207 -16.40589 -16.35774 -16.06614 -15.71741 -15.04808 -15.00218 -14.65400 -14.50636 -14.16998 -14.08540 -13.38516 -13.25835 -12.94045 -12.88591 -12.43746 -12.13821 -12.12384 -11.77837 -11.45482 -11.38448 -11.23357 -11.09837 -11.00608 -10.88824 -10.73785 -10.53057 -10.32682 -10.06233 -9.69641 -9.32958 -9.00058 -8.85839 -8.39799 -8.21574 -7.62562 -7.02027 -6.03286 -4.05254 0.89774 1.27660 1.64529 2.07678 2.62492 2.92297 3.27779 3.36105 3.37693 3.56461 3.62309 4.41898 4.56279 4.66574 4.79746 4.84843 5.00362 5.13912 5.21997 5.25430 5.31812 5.33787 5.49382 5.56893 5.63771 5.86041 5.98707 6.00103 6.03298 6.14552 6.18245 6.25098 6.38916 6.48083 6.50455 6.56602 6.62774 6.81619 6.93911 6.95908 7.00953 7.17310 7.32833 7.59791 7.70198 7.94545 8.34967 8.99368 9.58173 11.08032 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.002521 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.230992 B =11105.252076 C =11722.895972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.148 4.148 7 C -0.032 4.032 8 C 0.108 3.892 9 N -0.633 5.633 10 C 0.555 3.445 11 S -0.634 6.634 12 N -0.662 5.662 13 C 0.130 3.870 14 C -0.074 4.074 15 C -0.129 4.129 16 C -0.129 4.129 17 C 0.038 3.962 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.891 5.891 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.406 0.594 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 8.977 -11.715 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.071 3.929 4 C -0.226 4.226 5 C -0.098 4.098 6 C -0.168 4.168 7 C -0.054 4.054 8 C 0.014 3.986 9 N -0.260 5.260 10 C 0.196 3.804 11 S -0.505 6.505 12 N -0.287 5.287 13 C 0.008 3.992 14 C -0.074 4.074 15 C -0.187 4.187 16 C -0.186 4.186 17 C 0.000 4.000 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.243 0.757 34 H 0.235 0.765 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.751 9.576 -10.710 26.067 hybrid contribution -0.120 -2.127 -1.106 2.400 sum -21.871 7.449 -11.816 25.950 Atomic orbital electron populations 1.23050 0.78116 1.03946 1.01428 1.86036 1.21627 1.26702 1.88970 1.18809 0.90327 0.84956 0.98767 1.20964 0.99707 0.91786 1.10179 1.20970 0.94761 0.96824 0.97217 1.20912 0.93472 0.98225 1.04146 1.21201 1.01696 0.89683 0.92857 1.16635 0.86059 0.85872 1.10010 1.41960 1.26314 1.17640 1.40094 1.22388 0.81847 0.89756 0.86445 1.93415 1.83408 1.35128 1.38562 1.45490 1.26383 1.18574 1.38299 1.22198 0.83762 0.99917 0.93358 1.21006 0.97533 0.91257 0.97630 1.21805 0.96862 0.99722 1.00283 1.21802 0.99069 1.03250 0.94518 1.19082 0.89813 0.97550 0.93545 1.21173 1.09776 1.04667 1.19530 0.92274 1.25007 0.97411 0.96779 0.95232 1.69967 1.23548 1.36446 1.23095 0.86598 0.79762 0.83883 0.78090 1.19866 1.21088 1.21090 0.92621 0.88283 0.92472 0.85268 0.85712 0.85333 0.83516 0.75678 0.76530 0.89492 0.89576 0.95718 0.91086 0.93015 0.92993 0.91094 0.95710 0.96018 0.96034 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.20 10.20 -19.68 -0.20 -3.40 16 3 C 0.12 1.30 6.70 -39.07 -0.26 1.04 16 4 C -0.21 -1.87 9.04 -39.47 -0.36 -2.23 16 5 C -0.08 -0.69 10.04 -39.56 -0.40 -1.09 16 6 C -0.15 -1.50 10.04 -39.58 -0.40 -1.89 16 7 C -0.03 -0.40 7.87 -39.42 -0.31 -0.71 16 8 C 0.11 1.33 5.86 -83.49 -0.49 0.84 16 9 N -0.63 -7.47 5.10 -11.28 -0.06 -7.53 16 10 C 0.56 8.05 7.74 -86.93 -0.67 7.37 16 11 S -0.63 -11.72 25.27 -107.50 -2.72 -14.44 16 12 N -0.66 -8.95 4.96 -62.03 -0.31 -9.25 16 13 C 0.13 2.16 4.02 -4.04 -0.02 2.15 16 14 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 15 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 16 C -0.13 -2.13 8.05 37.16 0.30 -1.84 16 17 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 18 C -0.51 -13.29 7.65 -34.44 -0.26 -13.56 16 19 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 22 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.32 7.66 -51.92 -0.40 -0.08 16 29 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.15 2.00 6.52 -52.49 -0.34 1.66 16 33 H 0.41 3.73 8.80 -40.82 -0.36 3.37 16 34 H 0.40 4.42 6.18 -40.82 -0.25 4.17 16 35 H 0.09 1.57 7.99 -51.93 -0.41 1.16 16 36 H 0.09 1.59 7.99 -51.93 -0.42 1.17 16 37 H 0.02 0.33 6.86 -51.93 -0.36 -0.03 16 38 H 0.07 1.29 6.61 -51.93 -0.34 0.95 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 42 H 0.02 0.32 6.86 -51.93 -0.36 -0.03 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -32.24 371.47 -10.54 -42.78 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.70 Total: 5.39 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.87 Total: -9.76 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.37 Total: -42.08 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.20 Total: -3.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -11.72 SS G_CDS: -2.72 Total: -14.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.24 -10.54 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806596958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.112 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds