Wall clock time and date at job start Tue Mar 31 2020 13:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35979 * 117.00093 * 2 1 4 4 C 1.38533 * 120.08475 * 0.02562 * 3 2 1 5 5 C 1.38258 * 120.01754 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.17843 * 0.02562 * 5 4 3 7 7 C 1.38201 * 120.16362 * 359.97286 * 6 5 4 8 8 C 1.38724 * 119.98633 * 0.02562 * 7 6 5 9 9 N 1.40111 * 120.09390 * 179.97438 * 8 7 6 10 10 C 1.34767 * 119.99915 * 44.18787 * 9 8 7 11 11 S 1.71198 * 120.00092 * 5.46743 * 10 9 8 12 12 N 1.34777 * 120.00186 * 185.46486 * 10 9 8 13 13 C 1.46505 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47241 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.46889 * 299.99708 * 14 13 12 16 16 C 1.53005 * 109.47486 * 59.99423 * 14 13 12 17 17 C 1.52994 * 109.47208 * 180.02562 * 14 13 12 18 18 C 1.50694 * 109.47452 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99990 * 359.97438 * 18 17 14 20 20 C 1.37881 * 120.00235 * 179.97438 * 18 17 14 21 21 N 1.31506 * 120.00011 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47493 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47317 * 120.00339 * 22 20 18 25 25 H 1.48505 * 109.47094 * 240.00169 * 22 20 18 26 26 H 1.09005 * 109.47660 * 59.99041 * 1 2 3 27 27 H 1.09002 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46872 * 299.99537 * 1 2 3 29 29 H 1.08005 * 119.99103 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.90910 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.92079 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.01050 * 179.74230 * 7 6 5 33 33 H 0.96994 * 119.99698 * 224.19776 * 9 8 7 34 34 H 0.97001 * 119.99771 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.46643 * 299.99858 * 13 12 10 36 36 H 1.08996 * 109.46888 * 59.99636 * 13 12 10 37 37 H 1.08997 * 109.47125 * 60.00188 * 15 14 13 38 38 H 1.08995 * 109.46548 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46910 * 300.00167 * 15 14 13 40 40 H 1.09005 * 109.46435 * 60.00123 * 16 14 13 41 41 H 1.08995 * 109.47018 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.46662 * 300.00483 * 16 14 13 43 43 H 1.09005 * 109.47029 * 300.00071 * 17 14 13 44 44 H 1.09001 * 109.47309 * 59.99393 * 17 14 13 45 45 H 0.96995 * 120.00386 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2936 2.3745 0.0005 5 6 1.9227 3.6057 0.0000 6 6 3.3034 3.6807 -0.0016 7 6 4.0616 2.5253 -0.0021 8 6 3.4374 1.2864 -0.0016 9 7 4.2039 0.1135 -0.0026 10 6 5.2741 0.0072 0.8096 11 16 5.6158 1.2451 1.9417 12 7 6.0753 -1.0737 0.7307 13 6 7.2383 -1.1896 1.6141 14 6 7.9725 -2.4996 1.3214 15 6 7.0281 -3.6787 1.5643 16 6 8.4363 -2.5096 -0.1366 17 6 9.1867 -2.6209 2.2443 18 6 9.9095 -3.9115 1.9565 19 1 9.5396 -4.5787 1.1921 20 6 11.0431 -4.2405 2.6691 21 7 11.4933 -3.4283 3.6003 22 14 11.9395 -5.8399 2.3118 23 1 11.2361 -6.5699 1.2266 24 1 13.3312 -5.5433 1.8870 25 1 11.9641 -6.6780 3.5375 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2149 2.3195 0.0014 30 1 1.3341 4.5112 0.0008 31 1 3.7905 4.6446 -0.0024 32 1 5.1398 2.5867 -0.0076 33 1 3.9644 -0.6218 -0.5880 34 1 5.8819 -1.7749 0.0890 35 1 7.9112 -0.3498 1.4407 36 1 6.9078 -1.1820 2.6527 37 1 6.1628 -3.5925 0.9071 38 1 7.5514 -4.6119 1.3562 39 1 6.6977 -3.6715 2.6030 40 1 9.1091 -1.6696 -0.3096 41 1 8.9598 -3.4427 -0.3449 42 1 7.5709 -2.4234 -0.7937 43 1 9.8596 -1.7808 2.0718 44 1 8.8558 -2.6139 3.2829 45 1 12.2905 -3.6599 4.1019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806596958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:24 Heat of formation + Delta-G solvation = -20.534390 kcal Electronic energy + Delta-G solvation = -24563.074902 eV Core-core repulsion = 21092.135653 eV Total energy + Delta-G solvation = -3470.939250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60094 -40.31469 -38.85927 -37.81516 -35.65106 -34.19206 -31.19040 -30.80022 -29.12366 -28.13278 -28.03250 -27.64616 -25.62362 -24.52564 -23.29410 -22.98218 -20.32425 -19.89600 -18.99417 -18.43551 -18.24210 -17.31642 -16.91165 -16.59613 -16.46586 -16.24300 -16.08770 -15.57064 -15.11518 -15.02698 -14.85786 -14.48745 -14.42323 -13.97452 -13.85225 -13.35409 -13.01634 -12.88803 -12.71522 -12.68203 -12.46774 -12.39340 -12.38665 -12.21855 -12.07531 -12.00529 -11.99214 -11.60618 -11.07908 -10.90202 -10.82042 -10.52047 -9.77588 -9.16903 -8.89886 -8.38568 -8.13726 -6.21584 -0.08484 0.49894 0.58169 0.87352 1.41666 1.41863 1.44609 1.54156 2.25894 2.43061 2.51140 2.84012 3.21129 3.82123 3.90979 4.00830 4.01617 4.12707 4.26040 4.36504 4.42291 4.48849 4.52864 4.58577 4.64482 4.65835 4.75239 4.79282 4.87318 4.96230 5.07114 5.14534 5.16908 5.35628 5.38908 5.47038 5.48233 5.48946 5.55796 5.61976 5.76875 5.78930 5.89778 5.90818 6.28176 6.30043 6.42179 6.93842 7.46233 8.98928 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.002521 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.230992 B =11105.252076 C =11722.895972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.117 3.883 4 C -0.206 4.206 5 C -0.070 4.070 6 C -0.158 4.158 7 C -0.049 4.049 8 C 0.076 3.924 9 N -0.608 5.608 10 C 0.578 3.422 11 S -0.717 6.717 12 N -0.647 5.647 13 C 0.150 3.850 14 C -0.063 4.063 15 C -0.125 4.125 16 C -0.124 4.124 17 C 0.041 3.959 18 C -0.512 4.512 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.957 3.043 23 H -0.256 1.256 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.422 0.578 34 H 0.415 0.585 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.067 0.933 43 H -0.011 1.011 44 H -0.012 1.012 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.490 7.984 -14.210 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.225 4.225 5 C -0.089 4.089 6 C -0.177 4.177 7 C -0.070 4.070 8 C -0.018 4.018 9 N -0.234 5.234 10 C 0.215 3.785 11 S -0.590 6.590 12 N -0.274 5.274 13 C 0.026 3.974 14 C -0.064 4.064 15 C -0.182 4.182 16 C -0.182 4.182 17 C 0.003 3.997 18 C -0.550 4.550 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.578 5.578 22 Si 0.783 3.217 23 H -0.180 1.180 24 H -0.211 1.211 25 H -0.212 1.212 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.263 0.737 34 H 0.256 0.744 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.008 0.992 44 H 0.006 0.994 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.937 8.562 -13.272 29.518 hybrid contribution 0.676 -1.752 -0.391 1.918 sum -24.261 6.810 -13.663 28.665 Atomic orbital electron populations 1.23355 0.76014 1.05516 1.02544 1.86011 1.23810 1.26337 1.88770 1.18913 0.89864 0.86062 0.98221 1.21361 1.01174 0.91139 1.08834 1.21367 0.94254 0.98159 0.95096 1.21159 0.94430 0.98102 1.04035 1.21128 1.00914 0.90859 0.94145 1.16855 0.86982 0.85626 1.12295 1.41829 1.24785 1.18146 1.38671 1.21797 0.82428 0.88533 0.85744 1.93596 1.85151 1.38217 1.42051 1.45021 1.25383 1.18853 1.38172 1.21678 0.84278 0.98573 0.92846 1.20763 0.95656 0.92579 0.97416 1.21739 0.97738 0.98078 1.00642 1.21735 1.00525 1.02169 0.93722 1.18943 0.91703 0.95838 0.93174 1.21590 1.09365 1.05111 1.18926 0.90870 1.25932 0.98731 1.00284 0.95237 1.70123 1.24292 1.38725 1.24691 0.85514 0.78334 0.79710 0.78176 1.18005 1.21133 1.21165 0.90842 0.86670 0.91917 0.82342 0.82480 0.84080 0.85776 0.73748 0.74418 0.91262 0.91620 0.91505 0.92208 0.94213 0.94034 0.92248 0.91462 0.99227 0.99355 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.81 10.20 -93.32 -0.95 -6.76 16 3 C 0.12 2.31 6.70 22.60 0.15 2.46 16 4 C -0.21 -3.09 9.04 22.34 0.20 -2.89 16 5 C -0.07 -1.04 10.04 22.28 0.22 -0.81 16 6 C -0.16 -3.04 10.04 22.27 0.22 -2.82 16 7 C -0.05 -1.20 7.87 22.38 0.18 -1.03 16 8 C 0.08 1.79 5.86 38.19 0.22 2.02 16 9 N -0.61 -13.52 5.10 -189.61 -0.97 -14.49 16 10 C 0.58 16.50 7.74 179.06 1.39 17.89 16 11 S -0.72 -27.68 25.27 -56.49 -1.43 -29.11 16 12 N -0.65 -16.64 4.96 -350.17 -1.74 -18.38 16 13 C 0.15 5.09 4.02 86.38 0.35 5.44 16 14 C -0.06 -2.27 0.54 -52.18 -0.03 -2.30 16 15 C -0.12 -3.97 8.05 71.99 0.58 -3.39 16 16 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 17 C 0.04 2.04 4.04 29.84 0.12 2.16 16 18 C -0.51 -26.85 7.65 25.60 0.20 -26.65 16 19 H 0.07 3.57 5.68 -2.91 -0.02 3.56 16 20 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 21 N -0.94 -56.78 13.29 21.45 0.28 -56.49 16 22 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 26 H 0.07 0.39 7.66 -2.38 -0.02 0.37 16 27 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.49 7.66 -2.38 -0.02 0.47 16 29 H 0.16 1.39 6.30 -2.91 -0.02 1.37 16 30 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.12 3.59 6.52 -2.91 -0.02 3.57 16 33 H 0.42 6.68 8.80 -92.71 -0.82 5.86 16 34 H 0.41 7.84 6.18 -92.71 -0.57 7.27 16 35 H 0.07 2.63 7.99 -2.39 -0.02 2.61 16 36 H 0.07 2.54 7.99 -2.39 -0.02 2.52 16 37 H 0.07 1.55 6.86 -2.39 -0.02 1.54 16 38 H 0.06 2.05 6.61 -2.39 -0.02 2.04 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 41 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 42 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 43 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.54 371.47 2.81 -71.73 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.38 Total: 20.02 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.96 Total: -11.77 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.42 Total: -89.36 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.95 Total: -6.76 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -27.68 SS G_CDS: -1.43 Total: -29.11 kcal Total: -74.54 2.81 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806596958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.201 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds