Wall clock time and date at job start Tue Mar 31 2020 13:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46939 * 2 1 4 4 C 1.52995 * 113.28571 * 46.93076 * 3 2 1 5 5 C 1.53495 * 114.20663 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98968 * 87.71252 * 5 3 2 7 7 C 1.34767 * 136.05879 * 207.08951 * 6 5 3 8 8 O 1.21594 * 120.00293 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00454 * 180.02562 * 7 6 5 10 10 C 1.40130 * 120.00585 * 185.66159 * 9 7 6 11 11 C 1.38695 * 120.07546 * 33.99115 * 10 9 7 12 12 C 1.38201 * 120.01948 * 180.25661 * 11 10 9 13 13 C 1.38536 * 120.17566 * 359.49094 * 12 11 10 14 14 F 1.35105 * 119.92724 * 180.23421 * 13 12 11 15 15 C 1.38349 * 120.15337 * 0.25022 * 13 12 11 16 16 C 1.38735 * 119.97251 * 0.02562 * 15 13 12 17 17 O 1.35783 * 120.08513 * 179.97438 * 16 15 13 18 18 C 1.34806 * 117.00095 * 354.12013 * 17 16 15 19 19 H 1.08000 * 119.99855 * 354.47368 * 18 17 16 20 20 C 1.38637 * 120.00068 * 174.48289 * 18 17 16 21 21 N 1.31569 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99728 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47576 * 59.99636 * 22 20 18 24 24 H 1.48501 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47444 * 299.99379 * 22 20 18 26 26 C 1.47069 * 87.88103 * 27.34553 * 6 5 3 27 27 H 1.09002 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47380 * 300.00323 * 1 2 3 29 29 H 1.09002 * 109.46962 * 60.00181 * 1 2 3 30 30 H 1.08999 * 109.47380 * 239.99676 * 2 1 3 31 31 H 1.08995 * 109.46626 * 119.99637 * 2 1 3 32 32 H 1.08999 * 109.47463 * 193.06722 * 4 3 2 33 33 H 1.09003 * 109.47185 * 313.06404 * 4 3 2 34 34 H 1.08998 * 109.47697 * 73.06779 * 4 3 2 35 35 H 1.09003 * 113.46668 * 332.92813 * 5 3 2 36 36 H 1.09001 * 113.46711 * 202.49596 * 5 3 2 37 37 H 0.97007 * 119.99346 * 5.65268 * 9 7 6 38 38 H 1.08004 * 119.99029 * 359.97438 * 11 10 9 39 39 H 1.07998 * 119.90945 * 179.76204 * 12 11 10 40 40 H 1.07999 * 120.01095 * 179.97438 * 15 13 12 41 41 H 0.97000 * 119.99736 * 180.02562 * 21 20 18 42 42 H 1.08997 * 113.46923 * 87.44219 * 26 6 5 43 43 H 1.09002 * 113.46535 * 217.87735 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3368 2.3326 1.0266 5 6 3.5697 1.5692 -0.0006 6 7 3.5225 1.5067 -1.4692 7 6 4.3559 1.1090 -2.4508 8 8 5.4563 0.6720 -2.1743 9 7 3.9700 1.1965 -3.7392 10 6 4.7857 0.6746 -4.7521 11 6 5.5416 -0.4644 -4.5180 12 6 6.3498 -0.9751 -5.5160 13 6 6.3997 -0.3582 -6.7555 14 9 7.1879 -0.8644 -7.7291 15 6 5.6446 0.7753 -6.9986 16 6 4.8355 1.2965 -5.9994 17 8 4.0938 2.4092 -6.2353 18 6 4.2799 3.0294 -7.4176 19 1 5.0552 2.6908 -8.0889 20 6 3.4762 4.1021 -7.7718 21 7 2.5315 4.5144 -6.9541 22 14 3.7346 4.9619 -9.4098 23 1 3.5424 3.9892 -10.5153 24 1 2.7536 6.0681 -9.5484 25 1 5.1128 5.5117 -9.4683 26 6 2.1682 2.0754 -1.3954 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8935 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5710 3.3774 0.8227 33 1 0.2592 2.1822 0.9604 34 1 1.6791 2.0724 2.0282 35 1 4.0760 0.7177 0.4541 36 1 3.9262 2.5257 0.3819 37 1 3.1274 1.6207 -3.9653 38 1 5.5022 -0.9498 -3.5540 39 1 6.9406 -1.8599 -5.3306 40 1 5.6856 1.2545 -7.9655 41 1 1.9689 5.2646 -7.2021 42 1 2.1552 3.1652 -1.3807 43 1 1.4804 1.6551 -2.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812953957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:44 Heat of formation + Delta-G solvation = -37.817097 kcal Electronic energy + Delta-G solvation = -27253.324737 eV Core-core repulsion = 23215.422877 eV Total energy + Delta-G solvation = -4037.901860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.22506 -40.87109 -39.55207 -38.15386 -36.26090 -33.98878 -33.71349 -32.39862 -30.17486 -29.37741 -28.40855 -26.46949 -26.11567 -25.46785 -23.84918 -22.34737 -21.52155 -19.84996 -18.49051 -18.32262 -18.07513 -17.40319 -16.68416 -16.00265 -15.35914 -15.28918 -15.17586 -14.96058 -14.90187 -14.51262 -14.30872 -13.96165 -13.69642 -13.50414 -13.38896 -13.16218 -12.78529 -12.54153 -12.33259 -12.12228 -12.10273 -11.99051 -11.65940 -11.62398 -11.36410 -11.08050 -10.96914 -10.83843 -10.70490 -10.55343 -10.30129 -9.83893 -9.76429 -9.46533 -8.94952 -8.59863 -7.85852 -7.05666 -6.59534 -4.16919 1.86963 2.14131 2.65347 3.08103 3.08539 3.10934 3.48230 3.85518 3.97158 4.17551 4.37019 4.55304 4.71840 4.88701 4.94691 4.96440 5.11819 5.13499 5.33688 5.35646 5.38301 5.44692 5.48444 5.56727 5.62149 5.67272 5.72581 5.74594 5.78832 5.91264 5.95715 6.04207 6.06244 6.23639 6.27680 6.56544 6.76440 6.93422 6.94340 7.09353 7.22325 7.50724 7.67513 7.84689 8.28273 8.85891 8.90525 9.48521 10.57680 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.004000 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.213220 B = 6997.926140 C = 9031.356575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.099 4.099 4 C -0.138 4.138 5 C 0.135 3.865 6 N -0.663 5.663 7 C 0.735 3.265 8 O -0.583 6.583 9 N -0.662 5.662 10 C 0.083 3.917 11 C -0.051 4.051 12 C -0.226 4.226 13 C 0.127 3.873 14 F -0.152 7.152 15 C -0.257 4.257 16 C 0.157 3.843 17 O -0.169 6.169 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.043 3.957 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.269 1.269 26 C 0.106 3.894 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.272 0.728 42 H 0.085 0.915 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -5.033 12.793 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.132 4.132 3 C -0.100 4.100 4 C -0.195 4.195 5 C 0.011 3.989 6 N -0.402 5.402 7 C 0.439 3.561 8 O -0.461 6.461 9 N -0.308 5.308 10 C -0.012 4.012 11 C -0.072 4.072 12 C -0.246 4.246 13 C 0.107 3.893 14 F -0.130 7.130 15 C -0.277 4.277 16 C 0.100 3.900 17 O -0.072 6.072 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.162 4.162 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.018 4.018 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.246 0.754 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.161 0.839 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.443 -5.117 12.932 14.600 hybrid contribution -0.018 0.746 -1.307 1.505 sum -4.462 -4.371 11.625 13.197 Atomic orbital electron populations 1.21836 0.95438 1.01662 1.02102 1.21198 0.95911 0.93543 1.02592 1.22301 0.95221 0.96785 0.95727 1.21731 1.00957 0.98807 0.98046 1.22909 0.94678 1.02015 0.79284 1.48499 1.17855 1.67156 1.06729 1.15154 0.82395 0.78872 0.79707 1.90902 1.19714 1.53385 1.82074 1.42138 1.24105 1.61546 1.03043 1.16626 1.01896 0.96376 0.86312 1.20491 0.95243 0.92756 0.98723 1.20440 1.07165 1.04261 0.92726 1.17431 0.92187 0.94127 0.85556 1.91410 1.72547 1.86825 1.62254 1.20843 1.05048 0.99907 1.01951 1.18795 0.91928 0.87445 0.91784 1.83940 1.54135 1.31605 1.37516 1.21294 1.18388 1.12672 0.94377 0.88926 1.25272 0.94938 0.96420 0.99540 1.70002 1.18198 1.25555 1.35728 0.85753 0.78665 0.78864 0.80086 1.19344 1.20196 1.19375 1.23223 0.83397 0.98874 0.96273 0.92771 0.92227 0.92467 0.91412 0.91464 0.92050 0.91359 0.92005 0.90570 0.90149 0.75400 0.84670 0.85931 0.83945 0.91827 0.89647 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.27 37.16 0.34 -0.79 16 2 C -0.09 -0.83 5.53 -26.73 -0.15 -0.98 16 3 C -0.10 -0.88 1.19 -153.86 -0.18 -1.07 16 4 C -0.14 -0.92 8.96 37.15 0.33 -0.59 16 5 C 0.13 1.51 7.77 -8.51 -0.07 1.44 16 6 N -0.66 -9.75 3.50 -190.80 -0.67 -10.42 16 7 C 0.73 14.02 8.52 -86.93 -0.74 13.28 16 8 O -0.58 -12.79 14.87 5.28 0.08 -12.71 16 9 N -0.66 -13.13 5.21 -14.08 -0.07 -13.21 16 10 C 0.08 1.80 6.29 -83.44 -0.52 1.27 16 11 C -0.05 -1.03 8.65 -39.43 -0.34 -1.37 16 12 C -0.23 -4.33 10.02 -39.48 -0.40 -4.72 16 13 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 14 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 15 C -0.26 -5.73 9.11 -39.36 -0.36 -6.09 16 16 C 0.16 3.72 6.66 -38.94 -0.26 3.46 16 17 O -0.17 -4.51 9.30 0.01 0.00 -4.51 16 18 C -0.39 -10.47 9.44 30.88 0.29 -10.18 16 19 H 0.09 2.33 5.30 -52.49 -0.28 2.05 16 20 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 21 N -0.86 -23.63 13.67 55.48 0.76 -22.87 16 22 Si 0.94 19.86 29.55 -169.99 -5.02 14.83 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C 0.11 1.20 7.42 -8.37 -0.06 1.13 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 6.35 -51.93 -0.33 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.40 7.89 -51.93 -0.41 -0.01 16 33 H 0.07 0.41 5.96 -51.93 -0.31 0.11 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 36 H 0.08 0.82 8.10 -51.93 -0.42 0.39 16 37 H 0.41 7.89 8.27 -40.82 -0.34 7.55 16 38 H 0.14 2.64 6.48 -52.48 -0.34 2.30 16 39 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.14 3.16 5.72 -52.49 -0.30 2.86 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 43 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -30.98 361.41 -7.58 -38.55 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.64 Total: 9.66 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.49 Total: -1.86 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.02 Total: -46.49 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.08 Total: -17.22 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.98 -7.58 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812953957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.738 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds