Wall clock time and date at job start Tue Mar 31 2020 13:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46939 * 2 1 4 4 C 1.52995 * 113.28571 * 46.93076 * 3 2 1 5 5 C 1.53495 * 114.20663 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98968 * 87.71252 * 5 3 2 7 7 C 1.34767 * 136.05879 * 207.08951 * 6 5 3 8 8 O 1.21594 * 120.00293 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00454 * 180.02562 * 7 6 5 10 10 C 1.40130 * 120.00585 * 185.66159 * 9 7 6 11 11 C 1.38695 * 120.07546 * 33.99115 * 10 9 7 12 12 C 1.38201 * 120.01948 * 180.25661 * 11 10 9 13 13 C 1.38536 * 120.17566 * 359.49094 * 12 11 10 14 14 F 1.35105 * 119.92724 * 180.23421 * 13 12 11 15 15 C 1.38349 * 120.15337 * 0.25022 * 13 12 11 16 16 C 1.38735 * 119.97251 * 0.02562 * 15 13 12 17 17 O 1.35783 * 120.08513 * 179.97438 * 16 15 13 18 18 C 1.34806 * 117.00095 * 354.12013 * 17 16 15 19 19 H 1.08000 * 119.99855 * 354.47368 * 18 17 16 20 20 C 1.38637 * 120.00068 * 174.48289 * 18 17 16 21 21 N 1.31569 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99728 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47576 * 59.99636 * 22 20 18 24 24 H 1.48501 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47444 * 299.99379 * 22 20 18 26 26 C 1.47069 * 87.88103 * 27.34553 * 6 5 3 27 27 H 1.09002 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47380 * 300.00323 * 1 2 3 29 29 H 1.09002 * 109.46962 * 60.00181 * 1 2 3 30 30 H 1.08999 * 109.47380 * 239.99676 * 2 1 3 31 31 H 1.08995 * 109.46626 * 119.99637 * 2 1 3 32 32 H 1.08999 * 109.47463 * 193.06722 * 4 3 2 33 33 H 1.09003 * 109.47185 * 313.06404 * 4 3 2 34 34 H 1.08998 * 109.47697 * 73.06779 * 4 3 2 35 35 H 1.09003 * 113.46668 * 332.92813 * 5 3 2 36 36 H 1.09001 * 113.46711 * 202.49596 * 5 3 2 37 37 H 0.97007 * 119.99346 * 5.65268 * 9 7 6 38 38 H 1.08004 * 119.99029 * 359.97438 * 11 10 9 39 39 H 1.07998 * 119.90945 * 179.76204 * 12 11 10 40 40 H 1.07999 * 120.01095 * 179.97438 * 15 13 12 41 41 H 0.97000 * 119.99736 * 180.02562 * 21 20 18 42 42 H 1.08997 * 113.46923 * 87.44219 * 26 6 5 43 43 H 1.09002 * 113.46535 * 217.87735 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3368 2.3326 1.0266 5 6 3.5697 1.5692 -0.0006 6 7 3.5225 1.5067 -1.4692 7 6 4.3559 1.1090 -2.4508 8 8 5.4563 0.6720 -2.1743 9 7 3.9700 1.1965 -3.7392 10 6 4.7857 0.6746 -4.7521 11 6 5.5416 -0.4644 -4.5180 12 6 6.3498 -0.9751 -5.5160 13 6 6.3997 -0.3582 -6.7555 14 9 7.1879 -0.8644 -7.7291 15 6 5.6446 0.7753 -6.9986 16 6 4.8355 1.2965 -5.9994 17 8 4.0938 2.4092 -6.2353 18 6 4.2799 3.0294 -7.4176 19 1 5.0552 2.6908 -8.0889 20 6 3.4762 4.1021 -7.7718 21 7 2.5315 4.5144 -6.9541 22 14 3.7346 4.9619 -9.4098 23 1 3.5424 3.9892 -10.5153 24 1 2.7536 6.0681 -9.5484 25 1 5.1128 5.5117 -9.4683 26 6 2.1682 2.0754 -1.3954 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8935 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5710 3.3774 0.8227 33 1 0.2592 2.1822 0.9604 34 1 1.6791 2.0724 2.0282 35 1 4.0760 0.7177 0.4541 36 1 3.9262 2.5257 0.3819 37 1 3.1274 1.6207 -3.9653 38 1 5.5022 -0.9498 -3.5540 39 1 6.9406 -1.8599 -5.3306 40 1 5.6856 1.2545 -7.9655 41 1 1.9689 5.2646 -7.2021 42 1 2.1552 3.1652 -1.3807 43 1 1.4804 1.6551 -2.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812953957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:43 Heat of formation + Delta-G solvation = -55.828491 kcal Electronic energy + Delta-G solvation = -27254.105770 eV Core-core repulsion = 23215.422877 eV Total energy + Delta-G solvation = -4038.682893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.84527 -42.08285 -41.07789 -39.69772 -37.98681 -35.57570 -34.62767 -34.32899 -31.32148 -30.92641 -29.76889 -27.63879 -27.27780 -27.06958 -24.70115 -23.98968 -23.15307 -21.26854 -20.16965 -19.65047 -19.31884 -18.89754 -18.27608 -17.32796 -17.02137 -16.73111 -16.62082 -16.43717 -16.00495 -15.87603 -15.54045 -15.39749 -15.29801 -15.16727 -14.82705 -14.39495 -14.03197 -13.78764 -13.58074 -13.42625 -13.30935 -13.04947 -12.87537 -12.67018 -12.60970 -12.43422 -12.34868 -12.17475 -11.79528 -11.71801 -11.62160 -11.27730 -11.12428 -11.04602 -10.83503 -9.81951 -9.57614 -8.75307 -8.52783 -6.18966 0.17171 0.42955 1.34824 1.36720 1.44607 1.49949 1.98255 2.13027 2.65166 2.78163 3.03516 3.14374 3.18378 3.42379 3.74122 3.88047 3.94212 4.13136 4.21284 4.30466 4.34992 4.46544 4.49308 4.56305 4.61472 4.69983 4.74513 4.77917 4.89145 4.96374 5.01835 5.06572 5.16358 5.19115 5.25227 5.26729 5.27752 5.32067 5.41729 5.53979 5.61340 5.91094 6.00646 6.12968 6.85853 6.91429 7.39781 7.60896 8.67893 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.004000 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.213220 B = 6997.926140 C = 9031.356575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.075 4.075 4 C -0.133 4.133 5 C 0.127 3.873 6 N -0.667 5.667 7 C 0.729 3.271 8 O -0.617 6.617 9 N -0.665 5.665 10 C 0.080 3.920 11 C -0.052 4.052 12 C -0.200 4.200 13 C 0.123 3.877 14 F -0.143 7.143 15 C -0.261 4.261 16 C 0.130 3.870 17 O -0.204 6.204 18 C -0.418 4.418 19 H 0.099 0.901 20 C -0.008 4.008 21 N -0.905 5.905 22 Si 1.012 2.988 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.262 1.262 26 C 0.097 3.903 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.138 0.862 41 H 0.275 0.725 42 H 0.094 0.906 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -5.573 13.824 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.076 4.076 4 C -0.191 4.191 5 C 0.005 3.995 6 N -0.405 5.405 7 C 0.432 3.568 8 O -0.498 6.498 9 N -0.311 5.311 10 C -0.016 4.016 11 C -0.073 4.073 12 C -0.220 4.220 13 C 0.103 3.897 14 F -0.122 7.122 15 C -0.282 4.282 16 C 0.076 3.924 17 O -0.109 6.109 18 C -0.494 4.494 19 H 0.116 0.884 20 C -0.208 4.208 21 N -0.542 5.542 22 Si 0.832 3.168 23 H -0.183 1.183 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.025 4.025 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.245 0.755 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.544 -5.679 14.013 15.788 hybrid contribution 0.077 0.724 -1.470 1.641 sum -4.467 -4.955 12.543 14.207 Atomic orbital electron populations 1.21821 0.94172 1.02084 1.02629 1.21206 0.96983 0.93161 1.01903 1.22206 0.93657 0.97203 0.94545 1.21736 1.01294 0.98292 0.97754 1.23264 0.96572 1.02793 0.76920 1.48693 1.18449 1.65836 1.07508 1.15319 0.82552 0.79013 0.79872 1.90850 1.21277 1.55116 1.82582 1.42167 1.23894 1.61680 1.03357 1.16922 1.01854 0.96583 0.86210 1.20671 0.95024 0.92216 0.99361 1.20834 1.05530 1.04280 0.91353 1.17404 0.92227 0.93764 0.86297 1.91432 1.72168 1.86547 1.62008 1.20927 1.05075 1.00582 1.01594 1.19132 0.92573 0.87659 0.93027 1.83914 1.55805 1.33204 1.37968 1.21714 1.19246 1.13607 0.94783 0.88411 1.26400 0.94402 0.96751 1.03236 1.70116 1.19564 1.26587 1.37901 0.84731 0.78861 0.77834 0.75405 1.18292 1.19295 1.18701 1.23524 0.81492 0.99472 0.98003 0.92504 0.90421 0.93165 0.94037 0.90240 0.91695 0.90243 0.90423 0.90662 0.88696 0.75464 0.83781 0.82273 0.84419 0.91557 0.88817 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.27 71.98 0.67 -1.28 16 2 C -0.10 -1.53 5.53 30.60 0.17 -1.36 16 3 C -0.08 -1.21 1.19 -51.76 -0.06 -1.28 16 4 C -0.13 -1.38 8.96 71.98 0.65 -0.74 16 5 C 0.13 2.69 7.77 83.17 0.65 3.34 16 6 N -0.67 -19.67 3.50 -875.84 -3.06 -22.73 16 7 C 0.73 28.34 8.52 179.06 1.53 29.86 16 8 O -0.62 -27.36 14.87 -4.01 -0.06 -27.42 16 9 N -0.66 -27.29 5.21 -316.70 -1.65 -28.94 16 10 C 0.08 3.53 6.29 38.22 0.24 3.77 16 11 C -0.05 -2.05 8.65 22.37 0.19 -1.86 16 12 C -0.20 -7.25 10.02 22.33 0.22 -7.03 16 13 C 0.12 4.89 7.29 22.37 0.16 5.06 16 14 F -0.14 -5.31 17.26 44.97 0.78 -4.53 16 15 C -0.26 -11.81 9.11 22.42 0.20 -11.60 16 16 C 0.13 6.36 6.66 22.68 0.15 6.51 16 17 O -0.20 -11.38 9.30 -22.87 -0.21 -11.60 16 18 C -0.42 -23.17 9.44 67.92 0.64 -22.53 16 19 H 0.10 5.09 5.30 -2.91 -0.02 5.07 16 20 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 21 N -0.91 -51.35 13.67 21.61 0.30 -51.05 16 22 Si 1.01 41.10 29.55 68.60 2.03 43.12 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C 0.10 2.17 7.42 83.26 0.62 2.79 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.74 6.35 -2.39 -0.02 0.73 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.89 7.94 -2.39 -0.02 0.87 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 0.67 7.89 -2.39 -0.02 0.65 16 33 H 0.08 0.70 5.96 -2.39 -0.01 0.68 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 36 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.41 16.61 8.27 -92.70 -0.77 15.84 16 38 H 0.14 5.50 6.48 -2.91 -0.02 5.48 16 39 H 0.16 4.63 8.06 -2.91 -0.02 4.60 16 40 H 0.14 6.26 5.72 -2.91 -0.02 6.25 16 41 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.09 1.96 7.93 -2.39 -0.02 1.94 16 43 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 Total: -1.00 -69.03 361.41 4.90 -64.14 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.29 Total: 35.32 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.49 Total: 3.69 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -4.42 Total: -102.72 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.27 Total: -39.02 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -69.03 4.90 -64.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812953957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.310 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds