Wall clock time and date at job start Tue Mar 31 2020 13:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.52992 * 109.47231 * 120.00276 * 2 1 3 5 5 C 1.50700 * 109.47551 * 175.00006 * 4 2 1 6 6 N 1.29429 * 124.80826 * 89.95790 * 5 4 2 7 7 C 1.30938 * 117.36741 * 180.02562 * 6 5 4 8 8 C 1.35668 * 114.19269 * 359.97438 * 7 6 5 9 9 C 1.46674 * 126.13437 * 180.02562 * 8 7 6 10 10 O 1.21693 * 119.99951 * 29.15725 * 9 8 7 11 11 N 1.34770 * 120.00510 * 209.15831 * 9 8 7 12 12 C 1.46927 * 120.62757 * 6.40986 * 11 9 8 13 13 C 1.53192 * 108.78022 * 126.36877 * 12 11 9 14 14 C 1.53038 * 109.31222 * 54.63276 * 13 12 11 15 15 C 1.53043 * 109.53611 * 298.63546 * 14 13 12 16 16 H 1.08990 * 109.50112 * 301.41337 * 15 14 13 17 17 C 1.50711 * 109.49581 * 181.34757 * 15 14 13 18 18 H 1.07999 * 119.99687 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99706 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99539 * 180.02562 * 19 17 15 21 21 Si 1.86796 * 120.00143 * 0.02562 * 19 17 15 22 22 H 1.48495 * 109.47437 * 89.99569 * 21 19 17 23 23 H 1.48500 * 109.46775 * 209.99661 * 21 19 17 24 24 H 1.48503 * 109.47030 * 329.99191 * 21 19 17 25 25 C 1.46921 * 120.63673 * 186.12530 * 11 9 8 26 26 S 1.70952 * 124.80144 * 269.99945 * 5 4 2 27 27 H 1.09004 * 109.47022 * 300.00360 * 1 2 3 28 28 H 1.09006 * 109.47231 * 60.00003 * 1 2 3 29 29 H 1.08991 * 109.47447 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47153 * 240.00178 * 2 1 3 31 31 H 1.09000 * 109.47246 * 299.99814 * 3 2 1 32 32 H 1.08994 * 109.47491 * 60.00396 * 3 2 1 33 33 H 1.09002 * 109.47091 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47222 * 54.99609 * 4 2 1 35 35 H 1.09000 * 109.47315 * 294.99897 * 4 2 1 36 36 H 1.07998 * 122.90427 * 179.97438 * 7 6 5 37 37 H 1.09009 * 109.58381 * 246.15264 * 12 11 9 38 38 H 1.09002 * 109.59097 * 6.43337 * 12 11 9 39 39 H 1.09000 * 109.49813 * 174.58293 * 13 12 11 40 40 H 1.09004 * 109.49271 * 294.68453 * 13 12 11 41 41 H 1.08997 * 109.46361 * 58.65520 * 14 13 12 42 42 H 1.09000 * 109.46122 * 178.62277 * 14 13 12 43 43 H 0.97003 * 119.99695 * 180.02562 * 20 19 17 44 44 H 1.09009 * 109.58602 * 353.42092 * 25 11 9 45 45 H 1.09004 * 109.58702 * 113.84302 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5418 -0.8294 1.1888 6 7 4.3655 0.0501 1.6612 7 6 5.6455 -0.1916 1.5288 8 6 5.9285 -1.3598 0.8996 9 6 7.2674 -1.8863 0.6143 10 8 8.1992 -1.6081 1.3459 11 7 7.4659 -2.6782 -0.4580 12 6 6.3864 -2.9098 -1.4275 13 6 6.9013 -2.5694 -2.8295 14 6 8.1776 -3.3669 -3.1075 15 6 9.2541 -2.9806 -2.0905 16 1 9.4493 -1.9104 -2.1561 17 6 10.5208 -3.7420 -2.3853 18 1 10.5552 -4.4322 -3.2153 19 6 11.6361 -3.5566 -1.5961 20 7 12.7416 -4.2207 -1.8537 21 14 11.5767 -2.3623 -0.1610 22 1 11.1362 -3.0798 1.0622 23 1 12.9281 -1.7883 0.0614 24 1 10.6187 -1.2694 -0.4660 25 6 8.7675 -3.3214 -0.6831 26 16 4.3989 -2.1309 0.4859 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6053 -1.7198 1.2951 35 1 1.7516 -0.1584 2.1369 36 1 6.4099 0.4807 1.8892 37 1 6.0833 -3.9564 -1.3937 38 1 5.5345 -2.2747 -1.1846 39 1 6.1428 -2.8278 -3.5684 40 1 7.1187 -1.5029 -2.8881 41 1 7.9652 -4.4327 -3.0243 42 1 8.5326 -3.1449 -4.1138 43 1 13.5262 -4.0906 -1.2982 44 1 9.4873 -2.9558 0.0494 45 1 8.6625 -4.4021 -0.5874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824747434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:18 Heat of formation + Delta-G solvation = -1.479867 kcal Electronic energy + Delta-G solvation = -25410.475969 eV Core-core repulsion = 21940.362986 eV Total energy + Delta-G solvation = -3470.112983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32028 -39.46754 -37.10713 -36.59411 -33.58789 -32.07305 -31.35022 -30.51158 -28.44594 -27.46584 -25.35568 -25.33325 -24.06953 -22.16487 -21.40599 -20.72072 -19.49251 -18.68406 -18.28528 -16.83691 -16.64554 -16.15712 -15.40080 -15.28809 -15.00422 -14.71139 -14.22697 -14.14138 -14.06027 -13.76645 -13.50709 -13.15070 -12.93892 -12.78335 -12.61209 -12.53279 -12.23619 -12.23537 -11.74616 -11.53525 -11.50366 -11.26694 -11.13035 -11.09223 -10.71595 -10.50512 -10.20215 -10.00300 -9.80634 -9.69134 -9.44244 -9.22072 -9.15305 -8.92555 -8.63937 -8.19406 -6.13406 -4.15515 0.18401 1.00771 1.43877 2.44444 3.11747 3.33838 3.36916 3.46188 3.56579 3.82004 4.39969 4.42939 4.49576 4.56206 4.65992 4.97904 5.00265 5.14760 5.18244 5.19039 5.22119 5.25873 5.32452 5.40170 5.42383 5.54093 5.58981 5.69369 5.75873 5.90483 5.91186 5.98008 6.01786 6.05662 6.09360 6.31724 6.44513 6.56871 6.66970 6.73239 7.08770 7.37528 7.47912 7.66667 7.68248 8.30649 8.45847 8.89460 9.47923 10.98383 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.003470 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.071217 B = 8067.107817 C = 8732.668845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.042 4.042 5 C 0.040 3.960 6 N -0.473 5.473 7 C 0.109 3.891 8 C -0.280 4.280 9 C 0.584 3.416 10 O -0.528 6.528 11 N -0.599 5.599 12 C 0.098 3.902 13 C -0.133 4.133 14 C -0.100 4.100 15 C 0.004 3.996 16 H 0.031 0.969 17 C -0.517 4.517 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.261 1.261 25 C 0.104 3.896 26 S 0.182 5.818 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.185 0.815 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.266 0.734 44 H 0.081 0.919 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.960 6.042 2.858 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.083 4.083 5 C -0.235 4.235 6 N -0.187 5.187 7 C -0.048 4.048 8 C -0.404 4.404 9 C 0.369 3.631 10 O -0.406 6.406 11 N -0.332 5.332 12 C -0.026 4.026 13 C -0.171 4.171 14 C -0.138 4.138 15 C -0.016 4.016 16 H 0.049 0.951 17 C -0.555 4.555 18 H 0.096 0.904 19 C -0.129 4.129 20 N -0.532 5.532 21 Si 0.707 3.293 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.186 1.186 25 C -0.016 4.016 26 S 0.440 5.560 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.201 0.799 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.808 5.656 3.062 26.597 hybrid contribution 0.862 1.169 1.198 1.883 sum -24.946 6.825 4.260 26.211 Atomic orbital electron populations 1.21830 0.94269 1.01989 1.02276 1.21129 0.96058 0.97075 0.96818 1.21849 1.01911 0.95062 1.01656 1.20453 0.84868 1.02374 1.00592 1.27621 1.01496 0.95022 0.99353 1.66239 1.02071 1.30123 1.20297 1.22114 0.92265 0.94802 0.95589 1.25878 0.97955 1.02964 1.13624 1.16887 0.85637 0.78936 0.81612 1.90844 1.42032 1.58563 1.49181 1.48314 1.14972 1.47214 1.22661 1.22085 0.89183 1.01440 0.89939 1.21961 0.99190 1.01368 0.94601 1.21452 0.93376 0.98869 1.00115 1.19422 0.94675 0.97884 0.89570 0.95059 1.20930 0.93238 1.25629 1.15688 0.90351 1.25043 0.95336 0.95239 0.97316 1.69888 1.02379 1.41404 1.39510 0.87015 0.76615 0.82670 0.83019 1.19972 1.22184 1.18624 1.22628 0.81157 0.96620 1.01206 1.84070 0.95987 1.24465 1.51500 0.92360 0.92200 0.92437 0.90847 0.92792 0.92389 0.92108 0.89475 0.88608 0.79861 0.90848 0.90655 0.91269 0.91878 0.92337 0.91936 0.92455 0.90119 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.19 37.15 0.34 -0.39 16 2 C -0.09 -0.60 2.91 -90.63 -0.26 -0.87 16 3 C -0.15 -1.17 8.99 37.16 0.33 -0.83 16 4 C -0.04 -0.31 5.27 -27.89 -0.15 -0.45 16 5 C 0.04 0.42 5.88 -13.29 -0.08 0.34 16 6 N -0.47 -6.06 9.74 -11.50 -0.11 -6.17 16 7 C 0.11 1.55 11.21 -18.85 -0.21 1.34 16 8 C -0.28 -4.26 5.79 -37.10 -0.21 -4.48 16 9 C 0.58 11.30 7.60 -12.86 -0.10 11.21 16 10 O -0.53 -12.29 16.41 5.20 0.09 -12.20 16 11 N -0.60 -11.27 2.98 -174.57 -0.52 -11.79 16 12 C 0.10 1.40 5.57 -3.71 -0.02 1.38 16 13 C -0.13 -1.93 6.08 -26.61 -0.16 -2.09 16 14 C -0.10 -1.84 5.11 -26.69 -0.14 -1.97 16 15 C 0.00 0.09 1.83 -91.87 -0.17 -0.07 16 16 H 0.03 0.77 7.19 -51.93 -0.37 0.40 16 17 C -0.52 -14.17 9.15 -34.43 -0.31 -14.48 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 20 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 21 Si 0.88 23.22 24.32 -169.99 -4.13 19.09 16 22 H -0.27 -7.28 6.92 56.52 0.39 -6.89 16 23 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 24 H -0.26 -6.95 6.53 56.52 0.37 -6.58 16 25 C 0.10 2.31 5.10 -3.93 -0.02 2.29 16 26 S 0.18 2.00 19.40 -107.50 -2.09 -0.09 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 37 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.08 0.94 3.91 -25.70 -0.10 0.83 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.08 2.03 2.31 -51.92 -0.12 1.91 16 45 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -32.97 361.04 -8.69 -41.66 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.89 Total: -2.39 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.26 Total: -7.05 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.14 Total: -44.45 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.13 Total: 19.09 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.09 Total: -0.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.97 -8.69 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824747434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.180 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds