Wall clock time and date at job start Tue Mar 31 2020 13:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.52992 * 109.47231 * 120.00276 * 2 1 3 5 5 C 1.50700 * 109.47551 * 175.00006 * 4 2 1 6 6 N 1.29429 * 124.80826 * 89.95790 * 5 4 2 7 7 C 1.30938 * 117.36741 * 180.02562 * 6 5 4 8 8 C 1.35668 * 114.19269 * 359.97438 * 7 6 5 9 9 C 1.46674 * 126.13437 * 180.02562 * 8 7 6 10 10 O 1.21693 * 119.99951 * 29.15725 * 9 8 7 11 11 N 1.34770 * 120.00510 * 209.15831 * 9 8 7 12 12 C 1.46927 * 120.62757 * 6.40986 * 11 9 8 13 13 C 1.53192 * 108.78022 * 126.36877 * 12 11 9 14 14 C 1.53038 * 109.31222 * 54.63276 * 13 12 11 15 15 C 1.53043 * 109.53611 * 298.63546 * 14 13 12 16 16 H 1.08990 * 109.50112 * 301.41337 * 15 14 13 17 17 C 1.50711 * 109.49581 * 181.34757 * 15 14 13 18 18 H 1.07999 * 119.99687 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99706 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99539 * 180.02562 * 19 17 15 21 21 Si 1.86796 * 120.00143 * 0.02562 * 19 17 15 22 22 H 1.48495 * 109.47437 * 89.99569 * 21 19 17 23 23 H 1.48500 * 109.46775 * 209.99661 * 21 19 17 24 24 H 1.48503 * 109.47030 * 329.99191 * 21 19 17 25 25 C 1.46921 * 120.63673 * 186.12530 * 11 9 8 26 26 S 1.70952 * 124.80144 * 269.99945 * 5 4 2 27 27 H 1.09004 * 109.47022 * 300.00360 * 1 2 3 28 28 H 1.09006 * 109.47231 * 60.00003 * 1 2 3 29 29 H 1.08991 * 109.47447 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47153 * 240.00178 * 2 1 3 31 31 H 1.09000 * 109.47246 * 299.99814 * 3 2 1 32 32 H 1.08994 * 109.47491 * 60.00396 * 3 2 1 33 33 H 1.09002 * 109.47091 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47222 * 54.99609 * 4 2 1 35 35 H 1.09000 * 109.47315 * 294.99897 * 4 2 1 36 36 H 1.07998 * 122.90427 * 179.97438 * 7 6 5 37 37 H 1.09009 * 109.58381 * 246.15264 * 12 11 9 38 38 H 1.09002 * 109.59097 * 6.43337 * 12 11 9 39 39 H 1.09000 * 109.49813 * 174.58293 * 13 12 11 40 40 H 1.09004 * 109.49271 * 294.68453 * 13 12 11 41 41 H 1.08997 * 109.46361 * 58.65520 * 14 13 12 42 42 H 1.09000 * 109.46122 * 178.62277 * 14 13 12 43 43 H 0.97003 * 119.99695 * 180.02562 * 20 19 17 44 44 H 1.09009 * 109.58602 * 353.42092 * 25 11 9 45 45 H 1.09004 * 109.58702 * 113.84302 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5418 -0.8294 1.1888 6 7 4.3655 0.0501 1.6612 7 6 5.6455 -0.1916 1.5288 8 6 5.9285 -1.3598 0.8996 9 6 7.2674 -1.8863 0.6143 10 8 8.1992 -1.6081 1.3459 11 7 7.4659 -2.6782 -0.4580 12 6 6.3864 -2.9098 -1.4275 13 6 6.9013 -2.5694 -2.8295 14 6 8.1776 -3.3669 -3.1075 15 6 9.2541 -2.9806 -2.0905 16 1 9.4493 -1.9104 -2.1561 17 6 10.5208 -3.7420 -2.3853 18 1 10.5552 -4.4322 -3.2153 19 6 11.6361 -3.5566 -1.5961 20 7 12.7416 -4.2207 -1.8537 21 14 11.5767 -2.3623 -0.1610 22 1 11.1362 -3.0798 1.0622 23 1 12.9281 -1.7883 0.0614 24 1 10.6187 -1.2694 -0.4660 25 6 8.7675 -3.3214 -0.6831 26 16 4.3989 -2.1309 0.4859 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6053 -1.7198 1.2951 35 1 1.7516 -0.1584 2.1369 36 1 6.4099 0.4807 1.8892 37 1 6.0833 -3.9564 -1.3937 38 1 5.5345 -2.2747 -1.1846 39 1 6.1428 -2.8278 -3.5684 40 1 7.1187 -1.5029 -2.8881 41 1 7.9652 -4.4327 -3.0243 42 1 8.5326 -3.1449 -4.1138 43 1 13.5262 -4.0906 -1.2982 44 1 9.4873 -2.9558 0.0494 45 1 8.6625 -4.4021 -0.5874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824747434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:17 Heat of formation + Delta-G solvation = -22.814958 kcal Electronic energy + Delta-G solvation = -25411.401128 eV Core-core repulsion = 21940.362986 eV Total energy + Delta-G solvation = -3471.038142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58234 -40.66018 -38.59295 -37.25035 -35.45599 -33.80719 -32.61914 -31.85899 -29.39125 -27.96332 -27.15540 -26.65079 -25.11940 -23.70612 -22.71405 -21.29443 -21.01263 -19.74880 -19.53989 -18.92688 -17.91517 -17.48656 -16.71812 -16.36813 -15.99457 -15.92575 -15.68035 -15.43810 -15.20101 -14.93961 -14.87379 -14.67579 -14.24897 -14.12819 -13.81960 -13.47666 -13.25429 -13.06946 -13.02709 -12.76132 -12.67429 -12.38200 -12.20802 -12.11394 -11.99319 -11.78868 -11.65519 -11.58463 -11.45351 -11.12509 -11.10002 -10.84773 -10.71996 -10.36683 -9.90132 -9.70695 -8.41779 -6.43286 -0.83617 0.02873 0.46702 1.19658 1.26459 1.32893 1.39703 1.75779 2.00255 2.18205 2.95006 2.97895 3.38741 3.80275 3.81319 3.94631 4.02284 4.02943 4.04278 4.17293 4.34007 4.35182 4.43103 4.53282 4.60633 4.67805 4.71817 4.76883 4.83423 4.89080 4.91780 4.96648 5.03339 5.06655 5.15402 5.16343 5.27531 5.30712 5.46954 5.49139 5.50413 5.58213 5.63998 6.20773 6.24040 6.54202 6.65763 6.87166 7.22514 8.74064 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.003470 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.071217 B = 8067.107817 C = 8732.668845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.045 4.045 5 C 0.054 3.946 6 N -0.492 5.492 7 C 0.116 3.884 8 C -0.323 4.323 9 C 0.580 3.420 10 O -0.582 6.582 11 N -0.602 5.602 12 C 0.091 3.909 13 C -0.125 4.125 14 C -0.097 4.097 15 C 0.003 3.997 16 H 0.011 0.989 17 C -0.508 4.508 18 H 0.056 0.944 19 C 0.032 3.968 20 N -0.935 5.935 21 Si 0.931 3.069 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.270 1.270 25 C 0.110 3.890 26 S 0.248 5.752 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.036 0.964 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.176 0.824 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.267 0.733 44 H 0.049 0.951 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.635 5.911 2.369 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.086 4.086 5 C -0.219 4.219 6 N -0.207 5.207 7 C -0.042 4.042 8 C -0.447 4.447 9 C 0.368 3.632 10 O -0.465 6.465 11 N -0.333 5.333 12 C -0.031 4.031 13 C -0.163 4.163 14 C -0.135 4.135 15 C -0.017 4.017 16 H 0.029 0.971 17 C -0.547 4.547 18 H 0.074 0.926 19 C -0.167 4.167 20 N -0.575 5.575 21 Si 0.761 3.239 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.195 1.195 25 C -0.012 4.012 26 S 0.507 5.493 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.193 0.807 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -30.536 5.513 2.540 31.133 hybrid contribution 2.156 1.227 1.308 2.804 sum -28.380 6.739 3.849 29.422 Atomic orbital electron populations 1.21803 0.92644 1.02978 1.02592 1.21133 0.97298 0.95861 0.96449 1.21856 1.00285 0.96414 1.02022 1.20740 0.82301 1.04344 1.01215 1.28338 1.02873 0.93919 0.96810 1.66333 1.01468 1.31063 1.21801 1.22135 0.93016 0.94472 0.94626 1.25485 0.98070 1.04511 1.16602 1.17386 0.86769 0.78135 0.80885 1.90797 1.44316 1.60472 1.50872 1.48307 1.14610 1.46847 1.23581 1.22467 0.88405 1.03645 0.88587 1.21933 0.98268 1.00151 0.95908 1.21387 0.93727 1.00070 0.98301 1.19365 0.94609 0.95845 0.91858 0.97058 1.21284 0.94949 1.24421 1.14042 0.92581 1.25571 0.95469 0.96500 0.99181 1.69972 1.03159 1.43366 1.40970 0.86165 0.75938 0.80936 0.80820 1.20807 1.22066 1.19517 1.22154 0.82752 0.96902 0.99410 1.83647 0.92324 1.22836 1.50480 0.92094 0.91948 0.91111 0.90478 0.92160 0.92425 0.94512 0.86574 0.88058 0.80704 0.88205 0.88392 0.86587 0.92705 0.91467 0.92056 0.92321 0.93285 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.19 71.98 0.66 -0.19 16 2 C -0.09 -0.83 2.91 -10.80 -0.03 -0.86 16 3 C -0.15 -1.99 8.99 71.98 0.65 -1.34 16 4 C -0.05 -0.47 5.27 29.85 0.16 -0.31 16 5 C 0.05 0.97 5.88 88.46 0.52 1.49 16 6 N -0.49 -11.77 9.74 -190.30 -1.85 -13.63 16 7 C 0.12 3.25 11.21 84.23 0.94 4.20 16 8 C -0.32 -9.46 5.79 23.88 0.14 -9.32 16 9 C 0.58 22.54 7.60 86.45 0.66 23.20 16 10 O -0.58 -28.14 16.41 -4.33 -0.07 -28.21 16 11 N -0.60 -22.12 2.98 -824.43 -2.46 -24.57 16 12 C 0.09 2.30 5.57 86.36 0.48 2.78 16 13 C -0.12 -3.19 6.08 30.67 0.19 -3.00 16 14 C -0.10 -3.38 5.11 30.62 0.16 -3.22 16 15 C 0.00 0.13 1.83 -11.60 -0.02 0.11 16 16 H 0.01 0.57 7.19 -2.39 -0.02 0.55 16 17 C -0.51 -28.50 9.15 25.60 0.23 -28.27 16 18 H 0.06 3.34 7.99 -2.91 -0.02 3.32 16 19 C 0.03 1.89 5.45 84.65 0.46 2.35 16 20 N -0.93 -58.63 13.96 21.45 0.30 -58.33 16 21 Si 0.93 50.43 24.32 68.60 1.67 52.10 16 22 H -0.28 -15.40 6.92 99.48 0.69 -14.72 16 23 H -0.29 -15.56 7.11 99.48 0.71 -14.86 16 24 H -0.27 -14.78 6.53 99.48 0.65 -14.13 16 25 C 0.11 4.92 5.10 86.22 0.44 5.35 16 26 S 0.25 4.55 19.40 -56.49 -1.10 3.45 16 27 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.67 6.80 -2.39 -0.02 0.66 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 37 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.10 2.03 3.91 -19.06 -0.07 1.96 16 39 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.05 2.53 2.31 -2.38 -0.01 2.53 16 45 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -76.07 361.04 2.97 -73.10 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 0.84 Total: 3.12 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.63 Total: -7.03 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -4.01 Total: -96.53 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.07 Total: -28.21 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.67 Total: 52.10 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.10 Total: 3.45 kcal Total: -76.07 2.97 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824747434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.285 kcal (2) G-P(sol) polarization free energy of solvation -76.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds